LOC113533047 (fsbp,LOC107593680,LOC107723453,LOC107687811,LOC105897825)


Basic Information

Item Value
gene id LOC113533047
gene name fsbp,LOC107593680,LOC107723453,LOC107687811,LOC105897825
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8115550 ~ 8120900 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924869.2
ctacacgcGAGTCAGAAGGCTGGATTTGCACACTGCTTTACTTGTACTGATGGACCTACAGTAAATCAGATGGAGCAGTGCAGTCTTTGCGAGGGTTATTCAGTAATATAGTGGTGTTTTGttaatgattatgattatgaagCGTGTTATTGATGGATCTCTCTACACTGCTCTAAGTCCAGCTCTTCCTACCACACTAAACTGGCATGTAGAAAAGCGTTAATAAGAGGAAACGCTGTAGCCACAAATAATAATCGATCGGATCTAATCTAAGGCATTTACCTACGAAAACACGTTCGAGCCTGAAATCTAAAGCTACATCCAGAACAAACCTAACGTTTGCACTGAACTGGCTCCGGTTTGGACATGAACTACTCTGCCTCCTATTGTGCCCGCCCCTTGAGGGAAATGAACCAATCAGCACGCGGGATACATTTGATTGACACCCCGCTGACTGAACGGATTCCAAAGCAGAGCTCAAGCACTAGAAAGCGGCTCTCCTGAGACTTCCTCTTGAAATTAGAAGCAACTGGTGTTTCTTTTTGCACATGGCGTTGTTATAGTTGTCACACAATCATGTAACGAGGGAAATATTGGATTATGAATGGAAATCCAGCGGTTAATTCAATCATGGAGCttcaaaacatttaataacGCGACTCTctggctgcgtcccaaaccgcatCCTACCGCACTAAATAGTATGTAGTGTTAATACTGGGTTTATCCGTCTGTCCTCTTCggcttgtggggaaaaaaatggccgCTAAAAGTGCAACGCATTTTGTCGTGATTTTTAAGCCTTTATTTAGTTCTTTCTAATCAAAAGCAGTTTTATATCGATGTCTCCTTTGCCATAAGAGAgactcatttttttctgttgtaatGCACTTGGGTTTGTTATGTAGGTCAGGCCAGGCTTAAGCAGCTTTACTGAACCTGCGTCAGCTTAAGCTGAAAGGAATTTGAGCAGAGCCCTCCCCTATAGGCGTGGGCCTAATCGAGGCTGGCCTAGTtaagcctgatttttttttttcccccctcacgTTTCTTTgcgtggagtgtgtgtggctgtgtaaCAGAACCAGCACAGAAACTCACACACGTGCAAGTGTTTgcaagagaaagacaaacagacagatagtgCAAGGGCAAAAAAGCCAGGGAGAAGAGACTAGTGGAAAGAGGTGAAGAAAACAAGCAGAGCTTAGAGCAACCAGGATCAGCTTAGAACCAAGATGTCTGCATTGTTTATGACAAGCAGCATGGTGGGCAAGGCACGCTCTTCAAACTTTACTCTGTCTGAGAAACTGGACCTGCTGCGCCTGGTTCAGCCGCACATCCGCATTTTGGAGGAGCACACAAACAAGCATGCCGTGATTGTGGACAAGAACCGGTGCTGGGAGAGCATAGCCGAGCGCTACAACAGCCTGGGAGGAGAGAGGCCGCCCCGGACGGCACAGGGGCTCCGGACCCTGTACAAACGACTCAAAGAGAGTGCCAAACAAGAAGTGGTCCAGCGGAGCCACGCCCAGCCTGAGTATCGGGGCAGCATCTCAGAACCAACCAAACGGATCATGGAGATGATCCCACATCTGTTTCACGCAGGGGACAAAGAGCACAACACGCTCCACAGGTTGCAATACAAGATGAACTCTCCAGTCGAGCAACCCGGCAGCAGTTCGTCTCTTCCTGCCATGCCGGACTACACACCCGCGGCCAGAGCGGTGAGGGTGGAGTCAGAGGATGTCAAACCTCCACCTGATCTCCAAATTGTAGTCCCGCACGATTCACCTGTTACATTAACAGCTCCACACAGTCAGGAACCCATTGCACAGACCGAGAAtgaagtggaggaggaggaagaggaggaagaactAGTCTCGAACGTTTATGCGGCCTCCCTCTCCCCTTGCCCCTCCTCTGTGCATCTCCCTCCATCACCTTCAGCACCCGCATCCAGACGCAGCCTGTACGAGAGGGGCGGTGTTTTGTTTAGAAACCCTGCACTGGAGGCGGAGTCTTTGCAGATGATGCGAGAGGAGCATGAGCTTTTACTGGCCAATCACAGGAAGCTTGGACAATATCTAGATGAGAAAAGAGAGGGGCTAAAAAGAAAGCAACAGTTGGAGGAGGAGCTcttgaggtcaaaggtcaaagtgGAGAAACTAAGGGCTGCGCGGCTACGCCATGGACTTCccctaatgtaaaaaaaacacacaaaaaagtagtGTAAAGACGGTAACACTGCTGGCATGTACAGTTTTACAAATGactattttatttgatttactttttctgtctgtagaagaagtaaatattttaactatCTGTGAATATGAGACAGACATGATTGTATTTTGTTGCAATAATA

Function

symbol description
fsbp Enables identical protein binding activity. Located in nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924869.2 True 2374 mRNA 0.47 2 8115550 8120900

Neighbor

gene id symbol gene type direction distance location
virma kiaa1429,LOC107687804,LOC107595823 coding upstream 20041 8072467 ~ 8095509 (+)
epb41l4b epb41l4b,LOC108256379,LOC101068824 coding upstream 70325 8009901 ~ 8045225 (+)
ptpn3 ptpn3,LOC108256378,LOC108443284,LOC107723490 coding upstream 105780 7971618 ~ 8009770 (+)
epb41b NA coding upstream 191297 7905872 ~ 7924253 (+)
trim35-28 LOC108256499 coding upstream 218241 7890628 ~ 7897309 (+)
cdh17 LOC108256708 coding downstream 19182 8140082 ~ 8156293 (+)
LOC113532572 LOC108256701 coding downstream 63192 8184092 ~ 8190259 (+)
LOC113533036 anks6,LOC103376383 coding downstream 75341 8196241 ~ 8214829 (+)
LOC113532619 ahrr coding downstream 97640 8218540 ~ 8250823 (+)
mrpl17 mrpl17,LOC107657704,LOC107699486,LOC107595760 coding downstream 144119 8265019 ~ 8268963 (+)
G328750 NA non-coding upstream 10088 8105262 ~ 8105462 (+)
G328620 NA non-coding upstream 456471 7657141 ~ 7659079 (+)
G328441 NA non-coding upstream 723102 7392241 ~ 7392448 (+)
G328427 NA non-coding upstream 742050 7373280 ~ 7373500 (+)
G328313 NA non-coding upstream 846788 7267734 ~ 7268762 (+)
G328754 NA non-coding downstream 14180 8135080 ~ 8135455 (+)
G328755 NA non-coding downstream 14617 8135517 ~ 8136163 (+)
G328944 NA non-coding downstream 95546 8216446 ~ 8216654 (+)
G328995 pigm non-coding downstream 136625 8257525 ~ 8264036 (+)
G329042 NA non-coding downstream 215452 8336352 ~ 8336582 (+)
LOC113532663 NA other upstream 212942 7901515 ~ 7902608 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other upstream 868271 7224022 ~ 7247279 (+)
G326997 NA other upstream 2777299 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 2800936 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 3126234 4984415 ~ 4989316 (+)
osr2 osr2,LOC106591507 other downstream 251785 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 267287 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 494173 8615073 ~ 8665836 (+)
LOC113532648 ptprh,LOC108256157 other downstream 647845 8768745 ~ 8821311 (+)
bmp6 bmp6 other downstream 730504 8851404 ~ 8922793 (+)

Expression


Co-expression Network