cthrc1b (cthrc1b,LOC108256451,LOC107726655,LOC107592186,LOC107688280,LOC105891862)


Basic Information

Item Value
gene id cthrc1b
gene name cthrc1b,LOC108256451,LOC107726655,LOC107592186,LOC107688280,LOC105891862
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2656902 ~ 2668209 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924873.2
CGTGTATACGCGCGCTCTCGTCACTCCGCGCTCTGCACAGGGAACATGGCGCATCTCGCACGCCGCGCGCTGCTCTTCCTCTGCTTGGCTTTTCCGTGTCACGGAGCTGAGAAAGTGAAAACCAGAGGGATCCGACAGAAGGACACCGAATACTTTGACAAATACGGCAGCTGCATGCAGGGTCCGCCAGGCATCCCGGGCCGAGAAGGAAACCCGGGAGTGAACGGAATTCCGGGAACGCCTGGAGTCCCAGGCCGAGACGGTGCCAAGGGAGAGAAGGGCGAGTGTGTAAGCGAGAGGTTCGAGGAGCCGTGGACGCCCAATTACAAGCAGTGTGCCTGGAACTCGCTCAATTACGGCATCGACCTGGGCAAAATCGCAGAGTGTACCTTCACTAAGCTGCGCTCGGACAGCTCCCTGCGTGTCCTCTTCAGCGGCTCGCTCCGGCTGAAGTGTAAGACGGCCTGCTGCCAGCGCTGGTACTTCACCTTTAACGGAGCCGAATGTTCCGGCCCACTGCCCATAGAGTCCATCGTTTACCTGGACCAGGGCAGCCCCGAGTTCAACTCCACCATCAACATCCACCGCACCACGTCAGTGGAAGGTCTGTGCGAGGGCGTCCGAGCCGGCCTCGTGGACGTGGCCATCTGGGTGGGCACGTGCGGTGACTACCCACACGGCGACGCCTCCACCGGCTGGAACTCCGTCTCCAGGGTGATCATCGAGGAGCTGCCTAAATGACCTTCGACCTCAAAAACACACTTTAGCATCTCCTTGGGTGGATACCGTTAGTGAAGAGGAGGCCAAAGTTTCTCTCGTTAGTGTTACtgtattatagaaaaaaaaattcagccttTGAAACTGAACAAGTACTGTAGCAACATCATGAAATTTTTATGCATCTTTTacgtatttttatattttatacagtttttatatgtgtattttaatatttttttcaacttcTTATAAAAGAACTTCCCAGCTCAAAGTATATACGTACCtctct

Function

symbol description
cthrc1b Human ortholog(s) of this gene implicated in Barrett's esophagus. Orthologous to human CTHRC1 (collagen triple helix repeat containing 1).

NR:

description
PREDICTED: collagen triple helix repeat-containing protein 1-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924873.2 True 1009 mRNA 0.53 4 2656902 2668209

Neighbor

gene id symbol gene type direction distance location
sept7b LOC108256449,LOC108413590,LOC108441798 coding downstream 9428 2627651 ~ 2647474 (-)
si:dkey-256h2.1 LOC108256448 coding downstream 30487 2616424 ~ 2626415 (-)
LOC113532793 NA coding downstream 45590 2607702 ~ 2611312 (-)
mios mios,LOC107671474,LOC107592481,LOC107592123 coding downstream 75879 2568991 ~ 2581023 (-)
zmp:0000000881 NA coding downstream 240496 2411801 ~ 2416406 (-)
csmd3a LOC108256161,LOC107688260,LOC107671459,LOC105891721 coding upstream 12128 2680337 ~ 2918894 (-)
LOC117595760 NA coding upstream 368185 3036394 ~ 3045887 (-)
eif3ha eif3h coding upstream 443233 3111442 ~ 3140099 (-)
rad21a LOC108256659,LOC108412369,LOC107711537,LOC107671466,LOC107726662,LOC107592120 coding upstream 472858 3141067 ~ 3150751 (-)
ext1a LOC108256617,LOC103040053,LOC108412368,LOC101464589,LOC102196503,LOC105891959 coding upstream 491263 3159472 ~ 3213627 (-)
G325616 NA non-coding downstream 58323 2597279 ~ 2598579 (-)
G325373 NA non-coding downstream 256312 2400317 ~ 2400590 (-)
G325366 NA non-coding downstream 269344 2387309 ~ 2387558 (-)
G325343 NA non-coding downstream 284100 2348305 ~ 2372802 (-)
G325356 NA non-coding downstream 322251 2334452 ~ 2334651 (-)
G325774 LOC108256343,LOC108245987,LOC103040777,LOC108439298 non-coding upstream 507551 3175760 ~ 3240764 (-)
G325778 NA non-coding upstream 526634 3194843 ~ 3214451 (-)
G325779 NA non-coding upstream 531018 3199227 ~ 3201250 (-)
G325780 NA non-coding upstream 540997 3209206 ~ 3237328 (-)
G326133 NA non-coding upstream 1153696 3821905 ~ 3878517 (-)
G325145 mtmr11 other downstream 559467 2088259 ~ 2097435 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 1088396 1557016 ~ 1568506 (-)
kif13a kif13a other downstream 1205902 1403264 ~ 1451000 (-)
G324748 NA other downstream 1285873 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 1314831 1294865 ~ 1342071 (-)
LOC113532533 LOC108256344 other upstream 561812 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 651335 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 1052480 3720689 ~ 3796368 (-)
vsig10l vsig10l other upstream 1289288 3957497 ~ 3966115 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 1640397 4308606 ~ 4347253 (-)

Expression


Co-expression Network