invs (invs,LOC107596027,LOC107706121)


Basic Information

Item Value
gene id invs
gene name invs,LOC107596027,LOC107706121
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7185077 ~ 7223848 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924886.2
TGTTTGCAGTAAGGAAAAAAGTTTTAGCGGTCTACTTTTTTGGGCAAATCGTACAGAAAAGCGCTAAAGCAATGAAGGGCCTGTGAATGTTTTTAACAGTGTGTTTTTACGCTATGATGCATGCAGTCACATAAAGCTACTCGCAGGCTATTTCATCTTGAATGAGGAAGGTGCAGCAGAGCTGCCAGGGGGACCTGCAGCGATTCTTGGCCCGGCGAGGGAAGACAGAGCTGGGCAACATCTGCTGAGGCCTCCTGTTTCCTCCTGTACTCCATCATGgcTACGGAGCAGCCTTTGAAGTCGTCTGGCCCCGCCCCCTTACACTCACAGGTGCATGCAGCAGCCGTGAATGGAGACAGGAGCTCCTTACAGAGACTGatcacagCAGAACCATGTTTGAGAGACAGTGAGGATCAGTTCGGCAGGACTCCTCTGATGTACTGCGTGCTGGCTGACCGCCTGGATTGTGCAGAGACGTTACTGAAGGCCGGAGCTTCCGTTAACAAAGCTGATCGCAGCAAGAGGACCGCACTGCATCTCGCTGCACAGAAGGGCAATGTTCGTTTCATGAAGTTGCTCCTGTCGCGGCATGCTAATTGGCTGTTGAAAGATCTTGAGGAAATGACACCGTTGCACTTAGCAACACGTCACTCCAGCCccaaacctctctctctcctgctcaagCACATGGCACCTGGAGAGGTGGATACTCAGGACAGGAACAAGcagACAGCTCTGCACTGGAGTGCGTTCTACAACCACCCTGAACACGTGAAGTTGCTGATCAAACACGACTCAAACATCGGAATACCTGACAGCGAGGGCAAGATTCCCCTGCACTGGGCAGCTCACAACAAACACCCTAACGCCACACACACTGTTCGCTGCATtctggacGCTGCTCCCACTGAGTCTCTTTTGAACTGGCAGGATTATGAAGGCCGGACGCCGCTTCATtttgcagtggctgatgggaatgAAGCGGTGGTTGAAGTTTTGACTTCATACGAAGGCTGCAGCGTTACAGCCTATGACAATCTGTTTCGAACACCGCTTCACTGGGCCGCATTGCTCGGCCATGCACGGATCGTTCATCTGCTGCTGGAGAGAAACAAGTCGGGTATGATTCCATCAGACAGCCAGGGAGCCACGCCGCTGCACTACGGAGCTCAGAGCAACTATGCTGACACTGTGGCGGTGTTTCTGAAGCACCCGTCGGTACGTGATGAGCCTGATCTGGAGGGCAGGACCGCCTTCATGTGGGCTGCTGGGAAGGgcagtgatgatgtcatcaaagtCATGCTGGAGCTTAAGCGAGATCTGGACATCAACATGGCCGACAAGTATGGAGGAACAGCACTGCATGCAGCTGCGCTCTCAGGCCATGTATCCACTGTGCGCTTGTTGCTGGAGAAAGGAGCCATGGTGGACCCTCTGGATGTGATGAAACACACTCCTCTGTTCCGCGCGTGTGAGATGGGCCACCGCGATGTCATTCTCACCCTTATCAAAGgtggGGCACGTGTGGACTTGGTAGACACAGACGGTCattcggcgctgcactgggcaGCGCTGGGCGGAAACGCAGAGGTGTGCGAGGTGCTGATGGAGAACGGGCTCGGACCAAACCTGCAAGATCATGCAGGCAGGACGCCGCTGCAGTGCGCTGCGTATGCAGGTTATATAAACTGCATGGCCCTGCTTATCCAACATGATGCTGATCCCAACATCCAGGATAAAGAGGGGAGGACGGCGCTCCACTGGTCGTGTAATAATGGATATTTGGATGCTGTGAAACTTCTTTTGGGATGTGGAGCTTTTCCGAACCATATGGAGCATACAGAGGAGAGgtacaCTCCTCTGGACTATGCCTTGCTGGGAGAACATCAGGAGGTGACACAGTTCCTTTTGGAGCACGGCGCTCTGTCCATCGCCGCCATCCAGGACATCGCCGCCTCGTCCATTCAGGCTTTGTACAAAGGCTATAAAGTGCGGCGAGCTTTCAAGGAGCGCAAGAACCTCTTAATGAGGCACGAGCAGCTCCGTAAAGATGCAGCCaaGAAGAGGGAAGAGGAGCGCAGACGTGAGGCTGAACAGCAGCTCTCATTGGCTGGAACACAGCATCATCAGATCTCATTGGTCCAAGTTGGTAGTGAGAGGCTGCCGTTGGTTGCTATAGAACTCAGCGGCGAGATTAAAGACATGAAGCCTAAAGGTCACAAACATCGAAGATCATCAAAGGCGCATCGTAGCCAATCGCACGACAGGACTGAGAAAAAGCCAAAAGAGCCAGagcaCAGGGCTGAAACTCCAGATGCCCCTCAGCTGTCTGCTTTAAACCTGCCCATGACCTCTCAGAGCCCCAACAGATCAGACACAaggacagatgtgtgtgtgagtggtgtgtatGCACCTGAGGAGTGTGTAGCCAGACCAGAGCGTCATTCTCCAGCAGGTTCCAGCAGGCCGGGCAgtgccagacacacacaccctgctcatTCGAGACCCAGGACTTCAGGTCGAACTTCAGAGTCTAAGACAAGCCATCCAGCTGTGGCATCCCTTCCTGCAGCTGTCAGTCAGTCCAGCAGCTTCGTCTCAGTTCCGATCCAAGCAGGACAGGAGAAGAGCAGAACGAGGGAGCCACGGGCTgagggagaaaaggagaagCCATCTAGGCCAAAGAGAGAGAAGGCGCGTAGGActgagaaagaggaggagaagtgCTCGAGGActgagagagaagcagaaagattttcagaaagagaaagagagagaggttggtGCAAAGAGGTCGAAAAAGGAAAACGaatggaaaaagagaaggagCACAGAAGAAAGAGTCTCCACAGAAGGAATCAAGCAGCGAGAGTGATACAGACAGCGTGGAGGAGGTTCTGTGTTCGGAGACGCCTGAAAGAACTGTTGTGTGGAAACATTAAAAAGCCTGAGCCTGCAGAAGTCACTGCTCTTCTGATTCAGTTTTTATGGGAGCGACCACTCCACATGGATAACACTTGCCAGAAAGCCATTTCTAGAGCACAGTCACCTCCTGCTAAAGCTGCAGCAAAGAAAAGCTCTGTGCTACAAAGTATTTATGGAGGAGCCCAAGCCAAAAGGGGGCGCGCTCTGAGAGCTGTGTCTGCCCTCAACACACTCAGCCAGAGTCAACTACTGCACGACCTGTCACTTAAGCCCACCAAACAAAtGAGTGGCGTGGAGTGTGTGCACTTACTAGACTCTCTGAGTCAAGCCAAGCAGTATTCCTATCACCTGCGTCCTCAGAGTGCCAGCAGCCAGAGCAGAACCAAAGACTGAGAGCACCTCAGCACACGTTCTAGTTCATACCCAATGACTGAACCATACACACTAAACAGCTTCATCGAGAGAAACCAACAGACAGAAACctgacacacactgtaatctgcttatttatatatttgtgtccGGAAACTGACGGGGTCCGGGAACCTAAAAGACACCAGTGAGGTACAGAAGGATGTCATGACAACCACACAGGTCAAAGTTTAAGCCCACAAACAAACATATGCATGAGATGACCTTTTATCCTGTCATCAACTGGTTATGCACCTGTCATATGGGTGACATACACCTGACATAACAAGGCTACCTGCATAGGAGTGCTTAATGCATGCTAAGAAAATATGATGCAATCTGGATACACGTACAAATGCAAGATTTTCACCAGAACAAACATTGTGCTGATTTCTTTGTCCACAAGATAGTTTGTCATAATTGTTTCTACGTTAAAATTGTAAGGCTCCTGTAGAATGTCATTCGACTGATCAGTCTGATTTTGGTTTCATGCTTACTGAGAGCCAAAAAACCCATTTACTATTGtgttctttacttttaaatacagacgggtgacaaattaaaggataAAGCAGTGGTTCGGTCATGCTGTGGGAGCCATTTAGCATCAGAGTATAAATGCACACTTCTCTGTCCAATCATGTTTACatattctgtttttgtcattGACTTTTTTTAAGCGAGCCATGTTGTCAGCTCAGTAATTAGTCCAGAGAGGGTGAACAAATGCACATAATTGGCTTGCAACAGAGAATAAGCTACAGAACCTGCAATGATTctcagccattttttttgtacGTTTTTCACGTCGAGGTCTTGGTTCAAATcggctgaaatactttgctagCCACAATCTGCCAGTTGATACCCTCTGAATTAGAAGGACATTAACTGCAAATTAAAGCAtgtacaaagttcttctgactgatcacctttgtcCTATGGTGAAACATTTTGATCTTGGTGGGCGTGGTCTCATCCAGGGTGACTCCACCCCATCCATGGGACATGagagctcactgaatggttgGACGAGGCTACTGATCGGAAATTTACCAAGCTGCCtctgttgggtccttgagcaagacccttaatcCTCaaatgctcagttgtatcctgtctcaattgtgagtcgctttggataaaagcgtcagccaaatgaggtaaatgtaaaCGTATGTGTTATGGCCTTCAcggtcaccagatctcaacccagttgaaaacttatgggagattttggagcgatGTGTTAGTCAGTactctccatcaccatcattaaaacactaattgagggaatatcttttggaaggtTGTTGTTCAGCCCTGCAGTATatttccagagacttgtagaatctataccagaaagctgttctggcagcttgtGGTGGCTCAACACCTTATTAACATACTTTGTtggttttttctttaatttgtcccCCTTCTGTATGCATGtattatatattctatataattatataacctGTAGATAGATTACAATGTATACGCCATCTacacattcatatttgtatcaattgacattatttattctACAGCTTTTATCATCGTTTTTTGATACATACGGCTTTGTAAAATCTTTTTATACTGTTGGCATTTCACTGTTGTGTCATAATGCTGAAAGATGCCTCACGATGCATGTTGTGAAGTTTTGCTGCACAGCAGCTGCCAGTGTTTTAACTTTAGGCTTCCACCACAAAGACCTCCGGGGCTTTAGGGTTAAGCTGAGAAATGCGTTAATTACAGAAGTAAATGAAAGGCCTGCAATGTCAGACTGTAGCCACAGGCTGAATTCCCCACTAACAGATGTGCCCGATTCCCCGAGTTATCAATTTCCAAATAGTTTTGATGTTTCCATTTGGTCGTAAAAAATTTCAGTAGCCTTCTTGTAGCAATTACTGAATTTTTTTACCAAATCATTGCAGCGTTTGAACACTTCTGATCATCATTAATGAAGAACTCATGGTACGTCGGTTGTCGAGTGGTTGCTAAGCAGGCATCATTAGCACTTTCCTTGTGTATTTCTATTGTATCCTGTACATGTAAACATGGCTTTACTGTTGTgctaataaacagaaagaaatcaa

Function

symbol description
invs Predicted to enable calmodulin binding activity. Acts upstream of or within several processes, including morphogenesis of an epithelium; opsin transport; and urogenital system development. Located in cilium. Used to study ciliopathy. Human ortholog(s) of this gene implicated in nephronophthisis 2. Orthologous to human INVS (inversin).

NR:

description
PREDICTED: inversin-like

GO:

id name namespace
GO:0001736 establishment of planar polarity biological_process
GO:0072116 pronephros formation biological_process
GO:0036372 opsin transport biological_process
GO:0035844 cloaca development biological_process
GO:0010171 body morphogenesis biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0001947 heart looping biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005516 calmodulin binding molecular_function

KEGG:

id description
K19626 INVS; inversin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924886.2 True 5438 mRNA 0.48 20 7185077 7223848

Neighbor

gene id symbol gene type direction distance location
LOC113532705 LOC108256546,LOC100304805 coding downstream 30503 7141490 ~ 7154574 (-)
LOC113532854 LOC108256544,LOC100304805 coding downstream 47958 7124011 ~ 7137119 (-)
tmem67 tmem67 coding downstream 64108 7091541 ~ 7120969 (-)
LOC113532636 NA coding downstream 98212 7075199 ~ 7086865 (-)
glipr2l glipr2,glipr2l,LOC107706057,LOC107689891 coding downstream 113715 7066998 ~ 7071362 (-)
stx17 stx17 coding upstream 24540 7248388 ~ 7268807 (-)
nr4a3 nr4a3 coding upstream 55713 7279561 ~ 7310012 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding upstream 230026 7453874 ~ 7568606 (-)
tmem145 tmem145,LOC107706472,LOC107593664,LOC107723540,LOC107657707 coding upstream 363345 7587193 ~ 7614945 (-)
lipeb lipe coding upstream 396853 7620701 ~ 7646843 (-)
G328215 tbrg4 non-coding downstream 152353 7031364 ~ 7032724 (-)
G328083 NA non-coding downstream 444031 6648296 ~ 6741046 (-)
G327560 NA non-coding downstream 1100428 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 1346800 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 1347295 5837489 ~ 5837782 (-)
G328439 NA non-coding upstream 153039 7376887 ~ 7378436 (-)
G328565 NA non-coding upstream 224325 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 226549 7450397 ~ 7452117 (-)
G328580 NA non-coding upstream 285021 7508869 ~ 7509107 (-)
G328588 NA non-coding upstream 334547 7558395 ~ 7558649 (-)
G328342 LOC108256401 other downstream 122649 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 801489 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1206698 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2207550 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 2837824 4308606 ~ 4347253 (-)
sec61b sec61b,LOC102796100 other upstream 154883 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 2927649 10151497 ~ 10156800 (-)
G330185 NA other upstream 3298884 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3699278 10923126 ~ 10930775 (-)
G330379 NA other upstream 3858420 11082268 ~ 11083151 (-)

Expression


Co-expression Network