LOC113533073 (LOC108256177,LOC108433879,LOC105891878)


Basic Information

Item Value
gene id LOC113533073
gene name LOC108256177,LOC108433879,LOC105891878
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2237788 ~ 2240410 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924906.2
CTCAGCCGATGCTTTAACATCATCACACGACTAAATCTGACAAACTTGAGGGACATTTGGTGAATTTGGAACGTTTCTCCAGAGGCTCCTCCTGAAGGATTTGTGAATCTTCATCATTTTCAGCCATGCCTAGTCCACTGGAGAAAGTGGTGGCACAGAAGAAGGAGGCCATTGAGGCTGTAATGGAGCTGTTTGAGAGAGGAGCCGAGGTCTTGGCTAGCACGGTCGGGGAGCTTTTTCCCTTGTGTGAAGCCGCTGCTCCAGTCCTGAAGCTAGCTTTAGACAACGTTGAGAGTAAGGAGGTGTTCTATGTCAAGGAGCAGTTCCTAGTCGTGAGGAATAGGCTTGACGTGATCTCGTCCCAGCTTGAAGACATCAATTGTGAGATACAGAAGGGACGTGTTGATTCACAATACTTTTCTGTGGAGGAGAACCTACGCAACCAGTTCCGCAAATATCTCGACATCTTGGAAGCCAAGCCCCAGTTTCGAGAGGTCAAAACGCGTTTGTTCTTAGACCATTTCAGCAAGACGGGAGGTGAGAGGAACCTCTATGTGCTGTACGATGCCCTAATGGGCACAAACACTTTCGGGGAATCCATCCTGGAGGTGGTTGAGCGATATGAGGCTAGGAACAGAAGGGTCCTAGAAGACTTCTGTGTCCGGATGAAGGAACTCTTCTGCCTGGGGTTGATCGTCTTGCTAGGTCATTGTGCCCTCACTCAAGGGGAGGATGTGGAGCAGGAGAAGATCTCTGAATGGAGCGAGAGAATCCAAGAGGTCGAGACCAAGATGAAGGCAGTCATTGAAGAATGTGTGAAGTCATTTGCAGAGCAGGCACGTCTGGACGTCCAGAGGCTGGTCCAGGAGAAAGAGGAAGGGAGTCTCCAAGACACAGCCCAGGAGCTGCTTAGTTTCCTGGTGAAGAAGTACGATTGGGTTAGGTGGTCTGTCCGTGTTATTAACCACTCAGGAAGCAGCTACCGCAACTGGCGTGCCGGAGACAACTTCCAGTGTGTTATAGGACAGAACTGTTTTGATGTGCTGCAGGTAAACAACACCAACGTAGTCGTGTCCTACTGCAGCAACCCACAGCCTCTTCCCAAGGACAACATCCAGCAGCTGATGGATGGTCCTGCTAAGAAGGGAGATGCCAAAGCTGTGGTGGAGAATCTGGAGAAGCAGCTGTCTGGTTTTATGGTCCATGCTGTCAGCCGTCATAAACAGAGCTTCGCGGCTTGGAACTTTCCAGAAGACTGCCATTATTGGGAGAGGCATAAGAATGTGGCCCTCTGTGTGCATTCAGATTAGCAACAAGGCCAAAAGATCAAATGAGATGCCTTATTGATTTGTGTTCATTATAAATTGGACACTTTTAatcatgtgtgtgaaaaacaaaccatTTAGCCAGACGTGATTGTATATGCCATTCCAACAGATACTTAGCCTACCTTCTTTACTTAACCTATATTCATTATGCTAATCACTGTCTTGTCTTAATGTCCATGACAGGTCTTAATACCAAAGGCATAAACTACACGTTTGTAATTAACCACAGCATGCACTTTGGCATTACTATAGTCGACCCTTATAAATGCAAGATTTCTTGAAGATCTCTTAGTCTAAATCTGTACTGAAAATCATGCTTGCTATGTTAAAATGGCATCCTAGTGCTACATCTGAGAATTGCGATCACTATGTAGCACAATAACTTACGGAACAGAATTCATGATCCTAGTAAATCATGATATAATCACAATTAGTCGCATGTCTTGCCAGTTGCCCATTATCCACTATACAGGCCACCTAGTAGCAGCATCAGTCTCTTTTACGTGCTTTTCTGGCCGTCAAATGTTCAGCATCTTGAAATCAGCTCTCTGTACTCACAAGTATAGTAAAGCTCTGGTTTCTGAcaagaaaacaaacttttgaacgctgtaacacactaagCCTTTTAGACACTGTGTTAAAAAAGTTTATGGTGACCCATCTTATTCTAGTGACTGGTTTGAAAAAAGTGGTGAGTAAATGTGTTTGGCAGTTTGCAATGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924906.2 True 2053 mRNA 0.45 2 2237788 2240410

Neighbor

gene id symbol gene type direction distance location
rpz LOC108256188,LOC108256189,LOC108433880,LOC103039167,LOC105891956,LOC103372036,LOC106605297 coding upstream 5089 2220806 ~ 2232699 (+)
nr2f5 nr2f5,LOC108256176,LOC103038004,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC105891836,LOC107671473,LOC100380645 coding upstream 54352 2168718 ~ 2183436 (+)
sv2a sv2a,LOC107688240,LOC107592458 coding upstream 97790 2104788 ~ 2139998 (+)
mtmr11 mtmr11,LOC107726680,LOC107592143,LOC107671475 coding upstream 146307 2059540 ~ 2091481 (+)
otud7b otud7b,LOC107726676 coding upstream 182049 2021415 ~ 2055739 (+)
LOC113532732 LOC108256179,LOC108433877,LOC108433850,LOC108256180,LOC108433878,LOC103039774 coding downstream 11713 2252123 ~ 2261887 (+)
LOC113532737 LOC108256188,LOC108256189,LOC108433880,LOC103039167,LOC105891956,LOC106605297,LOC103372036 coding downstream 33225 2273635 ~ 2276398 (+)
LOC113532739 LOC108256190,LOC108256173 coding downstream 39539 2279949 ~ 2290955 (+)
LOC113532734 NA coding downstream 54908 2295318 ~ 2296990 (+)
LOC113532735 LOC108256190,LOC108256173 coding downstream 69635 2310045 ~ 2312370 (+)
G325089 NA non-coding upstream 217400 2020184 ~ 2020388 (+)
G325076 apoa2 non-coding upstream 225807 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding upstream 236784 2000137 ~ 2001004 (+)
G324947 NA non-coding upstream 305462 1927080 ~ 1932326 (+)
G324889 NA non-coding upstream 498533 1735619 ~ 1739255 (+)
G325247 NA non-coding downstream 94469 2334879 ~ 2335106 (+)
G325268 NA non-coding downstream 156263 2396673 ~ 2396887 (+)
G325271 NA non-coding downstream 160060 2400470 ~ 2400684 (+)
G325462 NA non-coding downstream 403631 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 831439 3071849 ~ 3072073 (+)
LOC113533074 LOC108256184 other upstream 22378 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 93263 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 318078 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1074174 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1227565 956584 ~ 1010223 (+)
G325435 NA other downstream 325290 2565700 ~ 2569739 (+)
hamp NA other downstream 1770970 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 2151110 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 2158249 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2680570 4920980 ~ 4923681 (+)

Expression


Co-expression Network