si:dkey-65b12.6 (LOC108256587)


Basic Information

Item Value
gene id si:dkey-65b12.6
gene name LOC108256587
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5205561 ~ 5216300 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924952.2
GAATATATCATTATAGATCTGAATGAATTATGgattaatatttgaaaatgatatgatttaatatatttttttttccagacatggGGATTAAATTTTTCCTACTCTGCATTGCCATTCTAAATGCAACTGcAGTCAGTGGTTGCCCAATAGGCCAGGAGTTCATCACTGCCGTCATGCCTAATTATGTGGGTAATGATGGTGTCGCCAAACTTTCTATCACAGCCCAGACGTCCTTAGCTACTGTTACAGTCGAAATCAAGGGGCTCCAATATAAACAATCACTAAATATAGAGAAGGGCTCTACCACATACGTCACCCTCCCAAACAAGGCTGAGGTTTCTGAAAATGGAGTCTCAGACAAAACAGTGCTGATTACCTCTAATACAGACATCTCAGTGGTGTCCTCTCACATCAAACCATTTAGTGGAGACAGCAGTGTGATCTTCCCCAGTCATCAACTTGGCAGGAGACATGTAGTCTACACTCCAGAAGGAGGTCCCCTTAATAAGGTTGTGGCTATCGTCAATGGCAAGGGAGACAACACAATTACTCTTCTACCATATGCAGACCTCCAGCTTAAAAACAACATACACTTGCAGCGAGGAGTAAAGATGTCTATTAGATTAGCTCCTTATCAGGTTTATCTGCTCCGGAGTGAGAAGACCTTAACAGGAACTATGATTGAGTCTCAGCTCCCTGTAGCCGTCCTGGCAGGACATGAGTGCCTCAGCATCGTCTATACCTGTGAACATGTCTATGAACAGCTGGTGCCAGTAGAGTTGCTCTCTGATGAGTACCTAGTCCCTGCCATGCACCCCTTGCTTATTAACCAGGACACAGCCCATGTTATTGCAAGTGAGGATAATACTGATGTGACGGTTTTTCATGGTCCAATCCCCCAGCACAAATCACTTCGTTCTGGAGAGcttctgaatgtttttattaatttgccaACAGTCATCCGAAGCAATAAAAAGATCATGGTTATGTATTCCAGTTCCAACCTTCCCTTTGATGAGTTCTTGACTAACATAATTCCTGTATCACGGATGTCCAACTCATGGACTGTTTATGCACAAGATAGTTACCTcaattttgctgttgttgtatCAGAAATGCAGCCAAGTATTTCTCTTTTGAATCTCTTAGTACCTGTTTTTGCTGCAAACAGGAAGTATACATGGTCTATTAGAGCACTTGGTAGCCAGAAAGGCCCTATAACCATATCCAATAAACTACCACAGGCTGTCTATGTTTTTGGTGGGAAAGAAAGACATGGCTATGCCACAACAGGAGTGTGCAGTGCTCCTTCTCCACCACTACCTCCGGTAGATCCCTGCGCATCTGTTAAATGTCGTTGGAGAGAGGAGTGCAAGAAGGGTGTCTGTGTCCGTGTTGACACAGCAACATGTTGGGCTCTCGGGGATCCCCACTACAAAACATTCGATGGGAACGCATATGATTTCCAGGGCACCTGCACCTACACCATGACCACTACTGTAAAAACTGAGAAAGGCCTTGTCCCCTTCACAATTTTGGCAAAGAATAATAATAGAGGGAGTAATGTGGTGGCCTATGTGAGGACAGTATCACTCAGTGTGTACAATCATACAATAGTTGCCAGCAAGCAAACAGGTGTAGTTGAGGTGAATGGTGAAATCACTTACTTGCCTGTACGTTTAGCTGGAGGAAAGATAGAAGTGGTGCGAAGTGGTTGGAATGCACTCATAACAACAGACTTTGGCTTAGAGGTGAAATATGATTGGAACATGATGCTATACATAACAGTGCCCAGCACCTACTTTGGGTCACTTGGTGGACTTTGTGGAAACTACAATGGAGACAGGACAGATGAGCTGTCAGACCCCAAGGGAGTGAAACTCTCCACTGTCCTGGAGTTTGCCAAGAGCTGGAAAGTTTCAGACAATGACTTTTTCTGCCATGATGACTGTGCGGGCAAGTGTCTCCTCTGCCCGTCTGatcttaaagtaaaatatagtGAAAACAATTACTGTGGTCTTATGGCAAAAACAGATGGGCCATTTGCCCAATGCCACAAGATTGTCGACCCACGTATATACATAGACAattgtgtgtatgatgtgtgcaTCTATAGAGGCATTAGAAGTTTCCTCTGTGATAACATGCGGACCTATGCTGAGGCTTGCATGGCAGCTGAAGTGAAGATTGATCCCAACTGGAGGACGCTGTCAGAGTGCCCATTGCCATGCCCAGTAAACAGTCACTACGAGGCTTGTGGAACCGCATGTGCTGCCTCCTGCGTGGATCGTGATGCACCAAGCAAATGTGAAATGCCTTGTGTGGAGGGCTGCCAGTGCAATAACGGTTTTGTCCTCAGTGGAGACAAATGTGTGCCACTGGCGCAATGCGGCTGTTCCTATGAGAATCGTTATTACCCTCCTGCTGAGGTATTCTGGGGTGACCAGACGTGCACTAAGAAATGCTCCTGCAATTCAGGACAGGTCAAATGTACACCCACAAAGTGCAAGACATCCGAAGTGTGTAAAATCCAGAATGGTGTGAGAGATTGCTACCCACTATCCTACGGGCATTGCGCGGGCAGTGGAGATCCCCACTATTTAACCTTTGATGGGAGGCGCTTTGATTTCCAGGGCACTTGCACATATTACCTTTCTAAACTGGTCAGCACATCTGACCCTTCACTGGTGCCCTTCGAAGTTCTTGTCAAGAATGAAAACAGAGGAATGAATAAGGTTGTTTCCTTCACCAAGACTGTGGAGATCAACATTTTTGACTACACCATTATCATGAGTAAAGACAGTTATGGTAAAGTGATGgtcAACAACCTGTTTGTAAATTTGCCATTTGAGAAAGGGGGTGGTCAGCTATCCATATTCCGCAGTGGTTACTTTGGAGTGGTTAAAACAGACTTTGGAATGAATGTGAGATTTAACTGGGATAGCTATGTTGAAATCACTCTCCCCAGCACATACAATAGCCTAGTAGGAGGTCTCTGTGGTAACTGGAATGGGAACTTAAATGACGACCTGGCGTTCCCAAACAAAAGCATTACAACAAACGCTAATGCATTTGGAAACAGCTGGAAAGCCAGAAATGACCCTGATTGCTCAGCAGACTGCAAAGGCCAGAAGTGTCCCAAATGTGATGCTGTTGACAGGAATAAGGATGTTTTCACAAAACCTTGCAGCCTGATTACAGATGCAAATGGCCCATTTAAAGCATGTCATAGCCAAATCAGTCCCACCAAGTTCTATGAAGACtgtgtgtatgatatgtgtatgtatggtgGTCATTCTACAGCCCTCTGCAGTGCTCTTACAGCCTACACAGCTGCATGCCAGACAGCACACCGCATTGTGGAGAAATGGAGAACAAATAATTTCTGTCCTGCATCCTGCAAACCTAACAGCCACTATGATGTGTGTGCTGCTGGATGTCCCCAGACCTGCAACGGCTTGACTGAGCCCGCAGCTTGCCAGCGTGCACCCTGCATCGAAGGCTGTGTTTGTGATGTCGGATTTGTCCTGAGCAACGGCGAATGTGTGCCAATGGAGCGATGCGGATGTGCATATGAAGGCCAGTACTATAAGCTGGGCCAAGTCTTTTACCCCAAAGGCAAGTGCAGCCAGAGGTGTGTCTGTGAGGAGCAAGGAAAAGTCACATGCAAAGACAATTTCTCCTGCGGTCCTAATGAGCAGTGTGTAATCCGTGATGGGGTTCAAGCCTGCCATCCTAGTGGCAAAGGATCTTGCTCAGTCTCTGGTTCAGGCAACTACCACTCATATGATGGAAACCATATCAGAGTGCCAGGGAACTGTGTGTACAAACTGGTAGAAACAGTCCAGACTGCAATTCAGATGAAGATGCCTTTCAGTGTGACAGTGCAGCAAGTATCTTCTGCCATAGTAATCACAAGAAGAATCAACATAGTTATAGCCCAGTATAAGATTGCCCTGATTCCTGGACTTCTGTGGGAAATAAGGGTGGATGAATTTAAAGCTATTCTCCCAGTAACACTTGAAAGAGGACTGGTGAAGGTCTATCAGAGTGGTGCCTTCATTATCTTGGAAACCTCTTTTGGACTAAAGGTGACCTATGACACTGTGTCAGTGGCCACAGTTGAAATCCCTTCCACTTACAAAAATGCTGTCCGAGGTCTGTGTGGCAATTATAATGATAACAAGGCAGATGATTTACTAATGCCAAATGGTAATCTGACTTCCTCCGCTGAGAAATTTGTGGAAGCTTGGCGGGTGATTCAGGAAGGAGTGAACTGTCACACAGGGTGTCGACCAGGCCCCACATGCCCAGGGCCTGGACCAGAAGACAATGACTGCAGGATCCTAACTTTGGTGAAAGGCCCACTCTCTAATTGTCATTCCAAGGTTCCACCTTTACCATTCTACAATGCATGTGTAAAGGATGTCGCATCATACCCAGAAGATAAGACACTTGTTTGCCGCTATGTTCAAAACTATGTGGCTCGTTGTCAGCAAGCTGGTATCTCCATCAGCAGCTGGAGGAATGCAACCTTCTGTCCAATGACTTGTCCTGTAAAAAGTCACTATGAGCTATGTGCAGACACCTGCTCGTCAACTTGTGCCAGCCTTACCGAGTCATCTAGTTGTTCAGAGTGTCTTGAAGGCTGCCAGTGTGATGAAGGCTTTGTCTCTGATGGAGGCACCTGTAAGCTTGTAGATGATTGTGGTTGTTTAGTGGAGGGAAGGTATTACAAGTCTGGGGAATCAGTAGTCAGAGGAGACTGTATAGAGACATGCACCTGTAAGGCTGGACAGTTCTCATGTCAGTCCATGAAATGTAAGGAAGAAGAGGTCTGTCGCAAAAAGGACGGCGTTCCAACATGCATGCGTGATCCCTGCAGCATAACGAAATGTCGTGAGAAAGAGCGATGTGTGGAGAGGAacagtgtagcagtgtgtgtggccAGCTCTAAGGCCTCATGCCGAGTTGTTGGAGATCCTAACTATGAAACTTTCGATGGAAGCAGGTTTTCTTTTCAGGGCACCTGCTCTTATGTTATGGTTAAGACGTCGGGTGCAGACAAAAGCCTCACAGAGTTCACTATCATTAACAAGAACGAACTCGCCCATAGCACACGTGGCTCTTTCATAAAGACAGTCACCATAAAGTTCCCAGGCCACGAAATTATCATTAATCAACGTGCCCACGGCAAAGTGAAAATTGATGGTAAAGAATCTCTCCTGCCTGTGAGTCTGGACTCTGACCGTACCAGGATAACTCAATCAGGAATAAGGGGAATCCTGGAGACAGACTTTGGTTTGGAGGTCACTTTTGACTGGGGCGAGTTCTTCAAGGTGACAGTGTCCAGTAGCTACTATAAAAACCTAGTGGGCATGTGCGGAACCTATAATGACAACCCCAATGATGACTTTGTAACACCGTCAGGCGTTCCTGTCAAAGACAATACAGAGTTGGGGCAGTCATGGAGTGTTTCCAGCAGTGACCCCAAATGCTGGCACTTCCCCCCATGCTCTGAAGAGGAGAAGCGCCAGTATAGTGGCCCAAAGTTCTGTGGCTTGCTAGAAGACGAAGCTGGGCCATTCGCTAGCTGCAACAATACAATTAAATTGGAGCATTTTACATACAGCTGTCTCTTTTATACATGTCTCACTCACGGAAACCGTGACAACTTCTGCAACATCATGACCACTTTTGCAAACACCTGCAAGTGGTCAAACACTGAAGTGCCACAGTGGTGGAGGCAGATTACTAACTGCAAGCTGGACAAATAATCAAGAGGAGGGAGTCAGGGACTTATGATGTCCAACCGTGATTACAAAAAAGGAATCAAGttatttttcttctatttttaatCAATGTCATACAGATACATCTGCTGGGCAACTGTTTTGGGTaatgtgattaaataattaatcacttTTTCTAattaatcaaaaacaaaaaattgatcaaaatttcaaaaattttAATAGAATCATACTTTTGCTTGTTCTCTTTTCCTGTTACCGAATGCTTGCAAGatttcaataaataaagattattgtATCACTA

Function

NR:

description
PREDICTED: IgGFc-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924952.2 True 6057 mRNA 0.45 13 5205561 5216300

Neighbor

gene id symbol gene type direction distance location
LOC117595762 NA coding downstream 26543 5178282 ~ 5179018 (-)
LOC117595761 NA coding downstream 36935 5167096 ~ 5168626 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 108375 5085898 ~ 5097186 (-)
zdhhc11 LOC108256534 coding downstream 120493 5072247 ~ 5085068 (-)
LOC113532791 tppp,LOC107565752,LOC107601987,LOC107754442,LOC107677661 coding downstream 135375 5057853 ~ 5070186 (-)
rpp38 rpp38 coding upstream 91141 5307441 ~ 5309104 (-)
abcb4 abcb1,abcb4,LOC107549227,LOC107738866,LOC107689873 coding upstream 115829 5332129 ~ 5349833 (-)
slc25a40 slc25a40,LOC107666862,LOC107592430 coding upstream 175117 5391417 ~ 5400856 (-)
cldn12 cldn12 coding upstream 241933 5458233 ~ 5463036 (-)
washc5 kiaa0196,strumpellin coding upstream 276929 5493229 ~ 5512596 (-)
G326945 NA non-coding downstream 6155 5198223 ~ 5199406 (-)
G326940 NA non-coding downstream 24544 5180816 ~ 5181017 (-)
G326875 NA non-coding downstream 99595 5104832 ~ 5105966 (-)
G326830 NA non-coding downstream 237014 4967298 ~ 4968547 (-)
G326630 NA non-coding downstream 702960 4501589 ~ 4502601 (-)
G326958 NA non-coding upstream 39495 5255795 ~ 5256011 (-)
G326960 NA non-coding upstream 40751 5257051 ~ 5257276 (-)
G326981 NA non-coding upstream 78432 5294732 ~ 5295232 (-)
G326989 NA non-coding upstream 93749 5310049 ~ 5310265 (-)
G326995 NA non-coding upstream 97907 5314207 ~ 5314655 (-)
ubr5 ubr5 other downstream 228034 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 858308 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 1239446 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 1409193 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 1801143 3319544 ~ 3404418 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 613174 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 1040103 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 1840494 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 2162431 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 4935197 10151497 ~ 10156800 (-)

Expression


Co-expression Network