ncam3


Basic Information

Item Value
gene id ncam3
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5190018 ~ 5203404 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924956.2
TGTCTCCGTCTTGAGCCTCGTCGCAGAGTATAAAAAGAGTTGGACATGGAGGAGGTTTGTGGGTTTTGGAGCGCCTTTTACGCAGCAGCTTCACCAGCTGTACAGAGCCATGGCCACGTCCGCGGTCACAGTCACACTCTTCGGCTTCTTCTGCATGTTTGCGACATGGACAGATGCTGTAACAGAAATGCCCAAAGTGGAACTCATCGTCGCGAGAAAAGATATTCCGCTGGGAAGCACGGAGTTGTTGTTATGCAGAGCTAATAAAGCAACGACATTCAGATGGGAGAAGGATGAAGAAGAGATTGATGAGCTTATAGACAGTGATGAAGAAAATAGTAGGCTGACCTTGAAGAATGTCAAGATGACAGACAGTGGAATTTACAAGTGCATTTGCGATTTCGATGGTGAAGAATACGAGGATTCCGTCAACCTATATGTCTATGAGACACCAAACTTTGGTACAACTAAGACTTTCCATGAGTTTTTGGTGAACCAGACAGTGCACATTCCATGTCTGGTCACCGGGAAGCCTGAAGTGGAGACCAACTGGTATTGGAATGATGTCCAAGTGTCACGTAATGACACAAGTAATCTCAATGTGCTACCAGACGGGTCGCTGAAGATTACAAACATTCAGAGGGAAAATCACGGAACCTATGGCTGCGAGGGAAAAATCAAAGGACGGCCCATATCGAGGACTCTGAACATCTCTGTTGTTGTAAATGTTCCACCAACTGTCTTATTTCACGGTGAGAGGACAAAGGTTTTGGCTGGACCAGACAGAAATGTCACTTTAACCTGCTTGGTTACAGGAGCACCCCAACCAAGTATTACCTGGGAAACGCCTGAGACATCAGATTCCTCTCGCTACTTGTACAACTCAGACAAGAGTAAGCTCACTATTCCAGGTGTGGCCAGAAGTGACTTTGGAAGATACGTTTGTAGCGCTGTCAATAAAATTGGAGAAGACAGCGCAACATTCACACTGGATGTCTCAGAACTTCCGCTGGTGAGCCTGAGCCAGAGCGAGGTGGTCCTGAATCTCGGGGATTCAGTATCTGTCTTCTGCAATGCCACCGGACATCCTACACCCACCATACAGTGGCTGAACAGCAGCAAGAATGGTGGCATGCTTCAGATCAAGAATGTGGTGCCTTCTGATGGTGGTGTGTATTCCTGCAAAGCCACCAACGAGGCAGGCAGCAACACAAAGACCTTCACTCTAATGACCTCTCCAGGAGTACCAACCTCATTTACTATAAAACCTGGATCCGCAGCATTCCACATCAACCTGCAATCTGTAGTGAATGGGGGTTCTCCTATTACTCAATACATCATCCAGTGGAGAAAAGAATCAAAGGATGACTGGAATGAGACTGTGATCCCTTTTTCTGGTCGACTGGAGGTCACATCTCTGGCTCCATACACTGAATACTCTGTCCGCTTTGCTGCTAAAAACAAGCATTTTCGTGGAGACTTTTCTGCTGAAGAGAAGATTCGCACCCTGGCCACACAGGGGGAGCCAGACATGCCTGGACTGTCTGCAGACGAGGGCAAGATAGAGAGAAACTCCTATTCAATTCCAATAAAGCAGCTCAGTGATGGAGCCTCTCCCATTCAGCACTATGTAGTGCGCTACCAAATGCAGAACAAAGAAGGTGAGCCCTGGAGAGAAAAGATAATAGACGCAAACTCCAGTAGCATTCACCTCCAGAACCTGGAGTATGGCTCTGACTATCAGGCTGAAATCACTACTGTTAACATTAATGGCTTCTCCAAACCAGCTAAAATCTATTTCTCCATCCCACAAGCTCAGCACAGCCTGGGTAAAGGTGGTGTAGTGGCCATAGTGTTGGTCATCTTCCTGATGCTGTTGGTGGGGGTTGATGCTTTGTGTTGCTATACAAATCACTGTGGCATACTCAACTTCTTGGCCAGAAAACTGTTTGGCCCCAATGTGACTGAAGCTAAAAGTCTGGAGGAGGGTGTGTTTAACAATGTTGCTGTAACCATGAATGGGCTTGAGAAACCGAGGGGTAGCATCCCAAAACTACAGTCACTAAACAAGACAGGAAATGGAGTGCAGTCCGAAGTCACGTGTGACAAAGCTCCTCTCACAAAATTTGAGAAAGCACTAGCCAAGGCTGACCCAGTCAACGAAGCACgattgtgaaatgtttttgacaccaaaacaaaaagaaagaatgactTCAGGAATGTAGCTTTCTGGCTTTTTTTGATGCTATAATGCagcacaaaaaaaccccaaaactgtacaaaagtgtattatattttttatttcgaATTGCAAGTTAAGGTAAATACTTTGTTGCATGTAGTATTAAGTGATGGTAGAGTATGAGATTGGAAATTTAGCTTTTGACAAATATGATAATTTTGTAGATAAGAGCAGCTAACTGTGTACAGGCCAAAcattaaacagattttctgtGATAATCTGTACCATTAGGATTATACTTTCAGCATGCTGGAATGTCTAAAGCAATCATTATGGGAGgatattatttcacattaatgaacagACAATGCATTATTAtcactaatttatttaatatattttgatgACATTAATAgcaaaaattaatgttttattattgttatgataATCATTTGTTCTTTTCTGCATGGATTATATTGCCTATGTAGTGAAACTCTACCAAAAAATTAACTTACAGTACATGTGTATAAGCAAATTTGTATGATATAGGTTGTAGGAAGtgctgtatatttttgtaaatacgtttttgttattttactaTTGACTGTAATATATGTCTTAAAAAATT
>XM_026924957.2
TGTCTCCGTCTTGAGCCTCGTCGCAGAGTATAAAAAGAGTTGGACATGGAGGAGGTTTGTGGGTTTTGGAGCGCCTTTTACGCAGCAGCTTCACCAGCTGTACAGAGCCATGGCCACGTCCGCGGTCACAGTCACACTCTTCGGCTTCTTCTGCATGTTTGCGACATGGACAGATGCTGTAACAGAAATGCCCAAAGTGGAACTCATCGTCGCGAGAAAAGATATTCCGCTGGGAAGCACGGAGTTGTTGTTATGCAGAGCTAATAAAGCAACGACATTCAGATGGGAGAAGGATGAAGAAGAGATTGATGAGCTTATAGACAGTGATGAAGAAAATAGTAGGCTGACCTTGAAGAATGTCAAGATGACAGACAGTGGAATTTACAAGTGCATTTGCGATTTCGATGGTGAAGAATACGAGGATTCCGTCAACCTATATGTCTATGAGACACCAAACTTTGGTACAACTAAGACTTTCCATGAGTTTTTGGTGAACCAGACAGTGCACATTCCATGTCTGGTCACCGGGAAGCCTGAAGTGGAGACCAACTGGTATTGGAATGATGTCCAAGTGTCACGTAATGACACAAGTAATCTCAATGTGCTACCAGACGGGTCGCTGAAGATTACAAACATTCAGAGGGAAAATCACGGAACCTATGGCTGCGAGGGAAAAATCAAAGGACGGCCCATATCGAGGACTCTGAACATCTCTGTTGTTGTAAATGTTCCACCAACTGTCTTATTTCACGGTGAGAGGACAAAGGTTTTGGCTGGACCAGACAGAAATGTCACTTTAACCTGCTTGGTTACAGGAGCACCCCAACCAAGTATTACCTGGGAAACGCCTGAGACATCAGATTCCTCTCGCTACTTGTACAACTCAGACAAGAGTAAGCTCACTATTCCAGGTGTGGCCAGAAGTGACTTTGGAAGATACGTTTGTAGCGCTGTCAATAAAATTGGAGAAGACAGCGCAACATTCACACTGGATGTCTCAGAACTTCCGCTGGTGAGCCTGAGCCAGAGCGAGGTGGTCCTGAATCTCGGGGATTCAGTATCTGTCTTCTGCAATGCCACCGGACATCCTACACCCACCATACAGTGGCTGAACAGCAGCAAGAATGGTGGCATGCTTCAGATCAAGAATGTGGTGCCTTCTGATGGTGGTGTGTATTCCTGCAAAGCCACCAACGAGGCAGGCAGCAACACAAAGACCTTCACTCTAATGACCTCTCCAGGAGTACCAACCTCATTTACTATAAAACCTGGATCCGCAGCATTCCACATCAACCTGCAATCTGTAGTGAATGGGGGTTCTCCTATTACTCAATACATCATCCAGTGGAGAAAAGAATCAAAGGATGACTGGAATGAGACTGTGATCCCTTTTTCTGGTCGACTGGAGGTCACATCTCTGGCTCCATACACTGAATACTCTGTCCGCTTTGCTGCTAAAAACAAGCATTTTCGTGGAGACTTTTCTGCTGAAGAGAAGATTCGCACCCTGGCCACACAGGGGGAGCCAGACATGCCTGGACTGTCTGCAGACGAGGGCAAGATAGAGAGAAACTCCTATTCAATTCCAATAAAGCAGCTCAGTGATGGAGCCTCTCCCATTCAGCACTATGTAGTGCGCTACCAAATGAACAAAGAAGGTGAGCCCTGGAGAGAAAAGATAATAGACGCAAACTCCAGTAGCATTCACCTCCAGAACCTGGAGTATGGCTCTGACTATCAGGCTGAAATCACTACTGTTAACATTAATGGCTTCTCCAAACCAGCTAAAATCTATTTCTCCATCCCACAAGCTCAGCACAGCCTGGGTAAAGGTGGTGTAGTGGCCATAGTGTTGGTCATCTTCCTGATGCTGTTGGTGGGGGTTGATGCTTTGTGTTGCTATACAAATCACTGTGGCATACTCAACTTCTTGGCCAGAAAACTGTTTGGCCCCAATGTGACTGAAGCTAAAAGTCTGGAGGAGGGTGTGTTTAACAATGTTGCTGTAACCATGAATGGGCTTGAGAAACCGAGGGGTAGCATCCCAAAACTACAGTCACTAAACAAGACAGGAAATGGAGTGCAGTCCGAAGTCACGTGTGACAAAGCTCCTCTCACAAAATTTGAGAAAGCACTAGCCAAGGCTGACCCAGTCAACGAAGCACgattgtgaaatgtttttgacaccaaaacaaaaagaaagaatgactTCAGGAATGTAGCTTTCTGGCTTTTTTTGATGCTATAATGCagcacaaaaaaaccccaaaactgtacaaaagtgtattatattttttatttcgaATTGCAAGTTAAGGTAAATACTTTGTTGCATGTAGTATTAAGTGATGGTAGAGTATGAGATTGGAAATTTAGCTTTTGACAAATATGATAATTTTGTAGATAAGAGCAGCTAACTGTGTACAGGCCAAAcattaaacagattttctgtGATAATCTGTACCATTAGGATTATACTTTCAGCATGCTGGAATGTCTAAAGCAATCATTATGGGAGgatattatttcacattaatgaacagACAATGCATTATTAtcactaatttatttaatatattttgatgACATTAATAgcaaaaattaatgttttattattgttatgataATCATTTGTTCTTTTCTGCATGGATTATATTGCCTATGTAGTGAAACTCTACCAAAAAATTAACTTACAGTACATGTGTATAAGCAAATTTGTATGATATAGGTTGTAGGAAGtgctgtatatttttgtaaatacgtttttgttattttactaTTGACTGTAATATATGTCTTAAAAAATT
>XM_026924958.2
TGTCTCCGTCTTGAGCCTCGTCGCAGAGTATAAAAAGAGTTGGACATGGAGGAGGTTTGTGGGTTTTGGAGCGCCTTTTACGCAGCAGCTTCACCAGCTGTACAGAGCCATGGCCACGTCCGCGGTCACAGTCACACTCTTCGGCTTCTTCTGCATGTTTGCGACATGGACAGATGCTGTAACAGAAATGCCCAAAGTGGAACTCATCGTCGCGAGAAAAGATATTCCGCTGGGAAGCACGGAGTTGTTGTTATGCAGAGCTAATAAAGCAACGACATTCAGATGGGAGAAGGATGAAGAAGAGATTGATGAGCTTATAGACAGTGATGAAGAAAATAGTAGGCTGACCTTGAAGAATGTCAAGATGACAGACAGTGGAATTTACAAGTGCATTTGCGATTTCGATGGTGAAGAATACGAGGATTCCGTCAACCTATATGTCTATGAGACACCAAACTTTGGTACAACTAAGACTTTCCATGAGTTTTTGGTGAACCAGACAGTGCACATTCCATGTCTGGTCACCGGGAAGCCTGAAGTGGAGACCAACTGGTATTGGAATGATGTCCAAGTGTCACGTAATGACACAAGTAATCTCAATGTGCTACCAGACGGGTCGCTGAAGATTACAAACATTCAGAGGGAAAATCACGGAACCTATGGCTGCGAGGGAAAAATCAAAGGACGGCCCATATCGAGGACTCTGAACATCTCTGTTGTTGTAAATGTTCCACCAACTGTCTTATTTCACGGTGAGAGGACAAAGGTTTTGGCTGGACCAGACAGAAATGTCACTTTAACCTGCTTGGTTACAGGAGCACCCCAACCAAGTATTACCTGGGAAACGCCTGAGACATCAGATTCCTCTCGCTACTTGTACAACTCAGACAAGAGTAAGCTCACTATTCCAGGTGTGGCCAGAAGTGACTTTGGAAGATACGTTTGTAGCGCTGTCAATAAAATTGGAGAAGACAGCGCAACATTCACACTGGATGTCTCAGAACTTCCGCTGGTGAGCCTGAGCCAGAGCGAGGTGGTCCTGAATCTCGGGGATTCAGTATCTGTCTTCTGCAATGCCACCGGACATCCTACACCCACCATACAGTGGCTGAACAGCAGCAAGAATGGTGGCATGCTTCAGATCAAGAATGTGGTGCCTTCTGATGGTGGTGTGTATTCCTGCAAAGCCACCAACGAGGCAGGCAGCAACACAAAGACCTTCACTCTAATGACCTCTCCAGGAGTACCAACCTCATTTACTATAAAACCTGGATCCGCAGCATTCCACATCAACCTGCAATCTGTAGTGAATGGGGGTTCTCCTATTACTCAATACATCATCCAGTGGAGAAAAGAATCAAAGGATGACTGGAATGAGACTGTGATCCCTTTTTCTGGTCGACTGGAGGTCACATCTCTGGCTCCATACACTGAATACTCTGTCCGCTTTGCTGCTAAAAACAAGCATTTTCGTGGAGACTTTTCTGCTGAAGAGAAGATTCGCACCCTGGCCACACGGGAGCCAGACATGCCTGGACTGTCTGCAGACGAGGGCAAGATAGAGAGAAACTCCTATTCAATTCCAATAAAGCAGCTCAGTGATGGAGCCTCTCCCATTCAGCACTATGTAGTGCGCTACCAAATGCAGAACAAAGAAGGTGAGCCCTGGAGAGAAAAGATAATAGACGCAAACTCCAGTAGCATTCACCTCCAGAACCTGGAGTATGGCTCTGACTATCAGGCTGAAATCACTACTGTTAACATTAATGGCTTCTCCAAACCAGCTAAAATCTATTTCTCCATCCCACAAGCTCAGCACAGCCTGGGTAAAGGTGGTGTAGTGGCCATAGTGTTGGTCATCTTCCTGATGCTGTTGGTGGGGGTTGATGCTTTGTGTTGCTATACAAATCACTGTGGCATACTCAACTTCTTGGCCAGAAAACTGTTTGGCCCCAATGTGACTGAAGCTAAAAGTCTGGAGGAGGGTGTGTTTAACAATGTTGCTGTAACCATGAATGGGCTTGAGAAACCGAGGGGTAGCATCCCAAAACTACAGTCACTAAACAAGACAGGAAATGGAGTGCAGTCCGAAGTCACGTGTGACAAAGCTCCTCTCACAAAATTTGAGAAAGCACTAGCCAAGGCTGACCCAGTCAACGAAGCACgattgtgaaatgtttttgacaccaaaacaaaaagaaagaatgactTCAGGAATGTAGCTTTCTGGCTTTTTTTGATGCTATAATGCagcacaaaaaaaccccaaaactgtacaaaagtgtattatattttttatttcgaATTGCAAGTTAAGGTAAATACTTTGTTGCATGTAGTATTAAGTGATGGTAGAGTATGAGATTGGAAATTTAGCTTTTGACAAATATGATAATTTTGTAGATAAGAGCAGCTAACTGTGTACAGGCCAAAcattaaacagattttctgtGATAATCTGTACCATTAGGATTATACTTTCAGCATGCTGGAATGTCTAAAGCAATCATTATGGGAGgatattatttcacattaatgaacagACAATGCATTATTAtcactaatttatttaatatattttgatgACATTAATAgcaaaaattaatgttttattattgttatgataATCATTTGTTCTTTTCTGCATGGATTATATTGCCTATGTAGTGAAACTCTACCAAAAAATTAACTTACAGTACATGTGTATAAGCAAATTTGTATGATATAGGTTGTAGGAAGtgctgtatatttttgtaaatacgtttttgttattttactaTTGACTGTAATATATGTCTTAAAAAATT

Function

NR:

description
neural cell adhesion molecule 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924956.2 True 2810 mRNA 0.43 17 5190018 5203404
XM_026924957.2 False 2807 mRNA 0.43 17 5190018 5203404
XM_026924958.2 False 2807 mRNA 0.43 16 5190018 5203404

Neighbor

gene id symbol gene type direction distance location
tmem147 tmem147,LOC106605633,LOC107666831 coding upstream 39791 5144970 ~ 5150227 (+)
nkd2b nkd2 coding upstream 49211 5111073 ~ 5140807 (+)
trip13 trip13,LOC107754445,LOC107677654,LOC107659068,LOC107729803,LOC107736543 coding upstream 84596 5097141 ~ 5105422 (+)
cep72 cep72 coding upstream 133351 5046966 ~ 5056667 (+)
atp6v1c1a atp6v1c1,atp6v1c1a,LOC104937165,LOC102207943,LOC102305030,LOC100703061 coding upstream 170921 5008544 ~ 5019097 (+)
LOC113532508 LOC108256086 coding downstream 25173 5228577 ~ 5234049 (+)
LOC113532857 NA coding downstream 32815 5236219 ~ 5240172 (+)
LOC113532629 LOC108256652,LOC108256651 coding downstream 37731 5241135 ~ 5248144 (+)
LOC113532776 LOC108256651 coding downstream 45506 5248910 ~ 5254552 (+)
LOC113532775 LOC108256159 coding downstream 51282 5254686 ~ 5258559 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 160228 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 206338 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 265382 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 385959 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 386507 4800572 ~ 4803511 (+)
G327071 NA non-coding downstream 337954 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 402466 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 629589 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 638815 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1444876 6648280 ~ 6708779 (+)
klf10 LOC108256604 other upstream 200702 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 259863 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 266337 4920980 ~ 4923681 (+)
LOC113532991 LOC108256125 other upstream 755767 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 795234 4391520 ~ 4394784 (+)
acbd7 acbd7,LOC108256514 other downstream 107805 5311209 ~ 5314614 (+)
G326997 NA other downstream 128864 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 2020618 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2698111 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 3169281 8372685 ~ 8378896 (+)

Expression


Co-expression Network