dnase2 (LOC108256294)


Basic Information

Item Value
gene id dnase2
gene name LOC108256294
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1724131 ~ 1734131 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924961.2
GCGGGCGGCGTAACGTAGAGAAGTAGCTAGCGAAGGCGGCTAATGCGGCTAATGCGGCGTCTTCTGTTGTCACATGTGTTTGGACAAGTCTGGAACTCGTGATTGTTTTGCAGCTGGCTGGAAAATGAGGatgtagttgtttttttaagtcGAGTTTCGAGTCAAGTTTCGAGCAGAAATCACGGCAGTAATGTTAAACTTATGCTAAGTCCCTCTACGGTTCGATGCTACAGATGGGAATTTGAGCTACACGCAGTTTGTCGTCTCATCTCAACAAGCATGTTCGTGTTCGTCCTGCTATTCCTCCTgcagccagcagagggcgccAACACCACATTCTCCTGCTCTGACGACCAGGGAAACGCAGTTGATTGGTTCTACCTTTACAAACTGCCGCGTCCTCATGAGCAGCCGCCGGAGGAAGGTCTGAAGTACCTGCTGCTGGAGGAGCAGAGTGAGGGCTGGACGGAGGGGCGGGGTCTGGTGGGAGACGGCACGGGGGCTTTGGGGCGGAGCCTCGGGCCGCTGTATGAGGATGGTGAACTTGGGTACATCCTGTACAACGATCAGCCCCCGGAACAGCGGCGTGTGAACGATGCAAACAGAAGTGGAGGACACACCAAAGGTGTGGTTCTGTTCGACAGCAGACAGGGCTTCTGGTTGGTCCACAGCACTCCTCATTTCCCGCCTCCCAAAACCGAGGGCAAGTTCTCGTACCCCAGCTCAGGCATCAACAACGGGCAGAACTTCATCTGCGTCACTTATCCTCTGGAGCGCTTCGACACCATCGGTGAGCAGTTGAAAATAAATCAGCCACACATCTATGACTGTGACATTCCCAAGTCTCTGACCTCCTCCGTGCCCAGCATGGCTGAGCTCTGTAAACACCGGCACGGGCAGAAAAACTCCAGCATCACAGACGGTTCCTTCTCCTCGCCCAATCGCAGCGTCTCTCTGCTCTCGCTGGCTGGGACAGAGTTCATCAGCTTTGCGAAAGGAGCTTCCTTTGAGAACGACCTGTACCATGCCTGGGTGGCTCCCACGCTGCAGACGGACCTGCTGGTGCAGTTCTGGCGTCGCTCCACCGGCGTCCTCCCGTCCGACTGCTCCTCCAAATGGAAGGTTCTGGACATGCACCTGCTCTCTCCAGGCGGCCAGATCACCTTCAAAGCCACTGAGGATCACTCCAAGTGGGCGGCAAGCGCGGGAGGAGGCGGGCTGAGGGGCGGGGCCTGGGTGTGCGTGGGGGACATTAACAGGAACGAGGCGGAGGAGAAGCGAGGGGGCGGGACCGTGTGCAGGCAGGATGTTGCCGTGTGGAAGGCGTATCGGGCGGCGGCGCTGCAGTGCGAGTCGTGTTCGGGTGAGGTGGAGGAGTGTGAGAGCGCACGGCTTTACCACTGACATGTAGCACTGCACGGCTGAGTGTAAAAGTTTGTGTACCCCATTTCAAAAAGATTAAACCAAGACATTCAATGCGAGGAATGTTTGCGTTTTAcaaatgtttcataaaaaaaaagaaatctgaaaatGTCTACGTTAAGAtgttaatataacagcaatCAAAAcgatattttataataatattactttccttttttccatttttttccctctttccctctgtttcctttttttgatTTCTGAATCAGATTTGTCTCCGTAAATACTCTGATATCTTTTTATCCACTTCTCCATCTCTTGTTTTCCTGATTTTTATTAACGCGACTGCATGCAGTAAAGCTGCTAGAGAGTTTGAGCCATTTAAGCCTTTCATGCCTTAAATAAGACTTGACCAAGTGTCTGTTTTAAGTCGTTAGATTAGATTAATGAGGGACGTACAGATCATTACCTAGAGTGTGTCCTCACTGGggattcatttttacttttactgggagcattaaattaaaattaaaaggtaCAATTTTTCACCCTGATGCCCAgaggggggtgaaaacttttgcacttaatgGTACACTGGGAAAAAGCACAATAATGATACTGTACAGAATAATGGTACCTAGTAGAGCTGCGTGagaatttcatttgttttatggatattattattattattatgtattcaTATTGTCTGTATAGTAGCTGGTAATGTTCAGTTctcttaaaatatataaaagataaatCTAAATACATGCACATGACCCGAGTGCTGAGTGAGGAGTCAGGCATTTTTAGAAATgaactgaattttatttttattttattattatttcttcagTCTACTGACCCACACTTGGTAGATGAACTTGAACTtacataacctttttttttaatatttagaaataacCTTTTGCCCTAATTATTGGCCTGTGATtgttattagtttgttttttgtgatcTATCACCAAGCACTATTAAACAGTACACATAAATAGCAATAAACAgatggttaataataataataataataataataataataataatacatgtaataGAGTTAAGGGATCAGGATTTTTCAACAAGTAGTGGTTGGTtgtgttttttgcttttattttataaaagtaaaagaaaaatgtttctgatgatATGCTGATCATATATGCACTTTGCTTATAGACACTGGAGCTTTGTGACGATCATTTTGATGATCAagatgtgtttcttttttttattttaattgaaatgtaATTTTGAAAAGTCTTGTATGTCTTTTGTGTCATGTAATCAAGACTATCATAAGCTGTATTGCTGATGGGGTTAATGATGcagtattaataaaaaattgaagagga

Function

NR:

description
PREDICTED: deoxyribonuclease-2-alpha

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0004531 deoxyribonuclease II activity molecular_function

KEGG:

id description
K01158 DNASE2; deoxyribonuclease II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924961.2 True 2753 mRNA 0.44 7 1724131 1734131

Neighbor

gene id symbol gene type direction distance location
LOC113532957 LOC108256297 coding upstream 10739 1708432 ~ 1713392 (+)
si:ch211-269k10.4 NA coding upstream 239602 1481899 ~ 1484529 (+)
ptpn23a ptpn23,ptpn23a coding upstream 413417 1296876 ~ 1310714 (+)
LOC113541446 LOC108256266 coding upstream 536770 1185520 ~ 1187361 (+)
LOC117595784 LOC108256266,LOC108256164 coding upstream 557173 1138279 ~ 1166958 (+)
phf1 phf1,LOC108256128,LOC108433894,LOC107592148,LOC107592451,LOC107665654,LOC107726675 coding downstream 36697 1770828 ~ 1788284 (+)
syngap1b LOC108256109,LOC108433893,LOC107592452,LOC107726670,LOC101464846,LOC102194363,LOC103477581 coding downstream 62224 1796355 ~ 1898390 (+)
paqr6 paqr6,LOC106605285 coding downstream 191451 1925582 ~ 1943290 (+)
rbm8a rbm8a,LOC107671476 coding downstream 280480 2014611 ~ 2019052 (+)
otud7b otud7b,LOC107726676 coding downstream 287284 2021415 ~ 2055739 (+)
G324842 NA non-coding upstream 56288 1667560 ~ 1667843 (+)
G324831 NA non-coding upstream 68270 1655128 ~ 1655861 (+)
G324832 NA non-coding upstream 70541 1652671 ~ 1653590 (+)
G324830 NA non-coding upstream 73193 1650037 ~ 1650938 (+)
G324799 NA non-coding upstream 104258 1592483 ~ 1619873 (+)
G324889 NA non-coding downstream 1488 1735619 ~ 1739255 (+)
G324947 NA non-coding downstream 192949 1927080 ~ 1932326 (+)
G325076 apoa2 non-coding downstream 259125 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding downstream 266006 2000137 ~ 2001004 (+)
G325089 NA non-coding downstream 286053 2020184 ~ 2020388 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 560517 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 713908 956584 ~ 1010223 (+)
psmc4 psmc4,LOC107719110 other upstream 917603 774289 ~ 806528 (+)
G324206 NA other upstream 975656 745673 ~ 748475 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 1114122 607612 ~ 610009 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 165495 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 408061 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 470715 2204846 ~ 2215410 (+)
G325435 NA other downstream 831569 2565700 ~ 2569739 (+)
hamp NA other downstream 2277249 4011380 ~ 4013538 (+)

Expression


Co-expression Network