eef1e1 (eef1e1,LOC107664672,LOC107572674,LOC107730010)


Basic Information

Item Value
gene id eef1e1
gene name eef1e1,LOC107664672,LOC107572674,LOC107730010
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9400242 ~ 9415382 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924966.2
AAGCACAGAACTAGTTCACAAAATGGATGATGCAATTATTTGTTAGTCGTGGGTTTAGCAGCATTAAGCCGTCTGTCATCAGATCACGCCTCTTTTCCGCCCTCGCTCGCGACACTCGGCTGTCAGGCCTGGCTGGGGGTGTGGCCGAACCGTTTCCACCAATCAGCGACCGCGTGCTGCTTTCCTCGTGCGGCAAGATGGCGTTGAGAGAGCTCTCTTCGTTGGAGAAATTTCTGGGATTGAAAAAGCTGAATAAATACAGTACGCAAGGACAAAGAAAGGTCCCTGTTCTCCAGAACAACAGTGGTCCATCTTTGGTTGGTTTGGCCACCATCAGCTCCCACCTGGTACATGAGGCTAAAAGAAAAGAGCTGCTGGGAGATTCAGCTGAGCAGAGAGCTGTTGTCCAGCAGTGGCTGGAGTATCGATTGACTCGACTTGATAACTGCTCTAAAGATGAGATCAAGATTATACTCAAGGAACTTAATCAGTACCTGGTGGATAAAGTGTATCTGGCTGGAAACTGGATCACTCTGGCAGATGTGCTGATGTACTATGGCATCCACCACATCATTATGGAGCTTGCAGTACAGCAGAAAGAAAAGTACTTGAACGTGACCCGATGGTTTGATCACATCCAACACTATCCAGGAGTGCGTCATCACCTGCCGCCTGTGGTAGTTCTGAGGAACAGAGTTTACCCGAGCGGTCACCACTGACCTCTTTCTGTTGGCCTTTTCCTAATGGGTAATGCATGGGACAAGACAAACAAATGGTTCTGACTGAgttgttgtgggtttttttttttccccctgtttgtgtttatgcacGAGCTGGGCAGTGAGGAAGCATGTAGTtcctttttccacatttaacCTGTGTAATTTTAGGCAACTATATTTATAAGGAGTATACTACATAAGTATGAAGAATGAAGCAAAGGAAAAATACACATGCAGCTAGTTGAGCCAGCCAGACTCATGCCAGAGGATGTGCAGTATTCCGAtctattttaagttttattttagctccctttatttattttctctttccttgTTTTAGGCTATTCAGTTTTCTCCTGCTCGTCATCATTTTCTCTCTGAGCTGCAGTAATAGTAGTTGTGTGGGCAGTGTACAGTGCTTAGCCTGGCATGCTGAGTTTGTGCTCTGGGGCAGAGGGCAGGCTACCAGCTGCAGCAGGCAAACCAGTGCCAATGCTGCTTCCTCTCCTCAGCATCTCCACAGCCAGTTGCCGAGAGTGACTGCAcgttatttcatcatttcaccCACAGTCTCCCACCCTGAGCTGGAAAATCCTATCATGGCACAGAAGTGGGCTTTCAGCTCGATCCAAATGATTACCAGCCGAAACACTAACAATATCACAgatttgagcatttcagaattgtatattgttatttttttattgtaataagGTGTTTGTTTAAGGAACTGTCACGCATGTCctctgtaaatgaaaaaaatggtaatTGGGGGGGTTTAGAGATAAGATTGCTTGTTTGTGCcacatttctgaaaaatgtttcttgcttttttttttttttttttttaagttagtaTGCACAAAGAGCAGAGTTCATTTCTGCTCTGTGTGCATATACTTTGTCTTGTGCcaataaagaaaagagaaatcaaAATTTTCATGTCTTCTA
>XM_026924967.2
AAGCACAGAACTAGTTCACAAAATGGATGATGCAATTATTTGTTAGTCGTGGGTTTAGCAGCATTAAGCCGTCTGTCATCAGATCACGCCTCTTTTCCGCCCTCGCTCGCGACACTCGGCTGTCAGGCCTGGCTGGGGGTGTGGCCGAACCGTTTCCACCAATCAGCGACCGCGTGCTGCTTTCCTCGTGCGGCAAGATGGCGTTGAGAGAGCTCTCTTCGTTGGAGAAATTTCTGGGATTGAAAAAGCTGAATAAATACAGTACGCAAGGACAAAGAAAGGTCCCTGTTCTCCAGAACAACAGTGGTCCATCTTTGGTTGGTTTGGCCACCATCAGCTCCCACCTGGTACATGAGGCTAAAAGAAAAGAGCTGCTGGGAGATTCAGCTGAGCAGAGAGCTGTTGTCCAGCAGTGGCTGGAGTATCGATTGACTCGACTTGATAACTGCTCTAAAGATGAGATCAAGATTATACTCAAGGAACTTAATCAGTACCTGGTGGATAAAGTGTATCTGGCTGGAAACTGGATCACTCTGGCAGATGTGCTGATGTACTATGGCATCCACCACATCATTATGGAGCTTGCAGTACAGCAGAAAGAAAAGTACTTGAACGTGACCCGATGGTTTGATCACATCCAACACTATCCAGGAGTGCGTCATCACCTGCCGCCTGTGGTAGTTCTGAGGAACAGAGTTTACCCGAGCGGTCACCACTGACCTCTTTCTGTTGGCCTTTTCCTAATGGGCTATTCAGTTTTCTCCTGCTCGTCATCATTTTCTCTCTGAGCTGCAGTAATAGTAGTTGTGTGGGCAGTGTACAGTGCTTAGCCTGGCATGCTGAGTTTGTGCTCTGGGGCAGAGGGCAGGCTACCAGCTGCAGCAGGCAAACCAGTGCCAATGCTGCTTCCTCTCCTCAGCATCTCCACAGCCAGTTGCCGAGAGTGACTGCAcgttatttcatcatttcaccCACAGTCTCCCACCCTGAGCTGGAAAATCCTATCATGGCACAGAAGTGGGCTTTCAGCTCGATCCAAATGATTACCAGCCGAAACACTAACAATATCACAgatttgagcatttcagaattgtatattgttatttttttattgtaataagGTGTTTGTTTAAGGAACTGTCACGCATGTCctctgtaaatgaaaaaaatggtaatTGGGGGGGTTTAGAGATAAGATTGCTTGTTTGTGCcacatttctgaaaaatgtttcttgcttttttttttttttttttttaagttagtaTGCACAAAGAGCAGAGTTCATTTCTGCTCTGTGTGCATATACTTTGTCTTGTGCcaataaagaaaagagaaatcaaAATTTTCATGTCTTCTA

Function

symbol description
eef1e1 Predicted to act upstream of or within positive regulation of DNA damage response, signal transduction by p53 class mediator. Predicted to be part of aminoacyl-tRNA synthetase multienzyme complex. Orthologous to human EEF1E1 (eukaryotic translation elongation factor 1 epsilon 1).

NR:

description
eukaryotic translation elongation factor 1 epsilon-1 isoform X2

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15439 EEF1E1, AIMP3; eukaryotic translation elongation factor 1 epsilon-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924966.2 True 1673 mRNA 0.44 4 9400242 9415382
XM_026924967.2 False 1358 mRNA 0.45 5 9400242 9415382

Neighbor

gene id symbol gene type direction distance location
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 50736 9333115 ~ 9349506 (+)
ofcc1 LOC108256210 coding upstream 212166 9082979 ~ 9188076 (+)
tfap2a tfap2a,LOC107664660 coding upstream 395022 8993786 ~ 9005220 (+)
zgc:101569 zgc:101569,LOC108256216,LOC108426563,LOC104953925 coding upstream 548926 8839566 ~ 8851316 (+)
atp6v0a1b LOC108256678,LOC108426558,LOC107755711,LOC107655803,LOC107557242 coding upstream 654272 8677355 ~ 8745970 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding downstream 22916 9438298 ~ 9451343 (+)
sycp2l sycp2l,LOC108261788 coding downstream 95226 9510608 ~ 9562189 (+)
LOC113541200 dnajc13 coding downstream 767409 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 929941 10345323 ~ 10426436 (+)
lztfl1 lztfl1,LOC107701792 coding downstream 1025575 10440957 ~ 10477542 (+)
G329522 NA non-coding upstream 47509 9352150 ~ 9352733 (+)
G329523 NA non-coding upstream 64434 9335186 ~ 9335808 (+)
G329361 NA non-coding upstream 426655 8973237 ~ 8973587 (+)
G329354 NA non-coding upstream 454686 8942878 ~ 8945556 (+)
G329288 NA non-coding upstream 651209 8748820 ~ 8749033 (+)
LOC117595781 NA non-coding downstream 57234 9472616 ~ 9482817 (+)
G329574 NA non-coding downstream 64957 9480339 ~ 9480553 (+)
G329581 NA non-coding downstream 75892 9491274 ~ 9491545 (+)
G329564 NA non-coding downstream 150311 9565693 ~ 9568672 (+)
G329685 NA non-coding downstream 160007 9575389 ~ 9575704 (+)
bmp6 bmp6 other upstream 477449 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 578931 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 734406 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 850004 8388187 ~ 8550238 (+)
osr2 osr2,LOC106591507 other upstream 1021346 8372685 ~ 8378896 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other downstream 206297 9621679 ~ 9687491 (+)
G329779 NA other downstream 376302 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 440800 9856182 ~ 9938468 (+)
G330038 NA other downstream 1015951 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 1179748 10595130 ~ 10768360 (+)

Expression


Co-expression Network