Item | Value |
---|---|
gene id | prkag2a |
gene name | prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 |
gene type | misc |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047616.1 |
NCBI id | CM018562.1 |
chromosome length | 21037487 |
location | 12062332 ~ 12156787 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
prkag2a | Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Predicted to be involved in cellular response to glucose starvation; protein phosphorylation; and regulation of catalytic activity. Predicted to act upstream of or within regulation of protein serine/threonine kinase activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Wolff-Parkinson-White syndrome; glycogen storage disease; hypertrophic cardiomyopathy 6; and lethal congenital glycogen storage disease of heart. Orthologous to human PRKAG2 (protein kinase AMP-activated non-catalytic subunit gamma 2). |
prkag2 | Enables adenyl ribonucleotide binding activity; protein kinase binding activity; and protein kinase regulator activity. Involved in several processes, including glycogen metabolic process; regulation of fatty acid metabolic process; and regulation of phosphorylation. Located in extracellular space. Part of nucleotide-activated protein kinase complex. Implicated in Wolff-Parkinson-White syndrome; glycogen storage disease; hypertrophic cardiomyopathy 6; and lethal congenital glycogen storage disease of heart. |
description |
---|
PREDICTED: 5'-AMP-activated protein kinase subunit gamma-1 isoform X3 |
id | description |
---|---|
K07200 | PRKAG; 5'-AMP-activated protein kinase, regulatory gamma subunit |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026937798.2 | False | 3326 | mRNA | 0.44 | 16 | 12062334 | 12156784 |
XM_026937799.2 | False | 2982 | mRNA | 0.45 | 16 | 12071175 | 12156784 |
XM_026937800.2 | False | 2638 | mRNA | 0.44 | 14 | 12095794 | 12156784 |
XM_034297816.1 | False | 2474 | mRNA | 0.43 | 13 | 12123458 | 12156784 |
XR_003404147.2 | True | 3411 | misc_RNA | 0.45 | 16 | 12062332 | 12156787 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
vps41 | vps41,LOC107722032,LOC107558337,LOC107748298 | coding | upstream | 118824 | 11900755 ~ 11943508 (+) |
fam49bb | fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 | coding | upstream | 509115 | 11488916 ~ 11553217 (+) |
asap1b | LOC108256502,LOC108256646,LOC108434233 | coding | upstream | 576027 | 11391309 ~ 11486305 (+) |
LOC113541334 | LOC108256505 | coding | upstream | 679526 | 11378301 ~ 11382806 (+) |
chmp4c | chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 | coding | upstream | 687827 | 11370263 ~ 11374505 (+) |
LOC113541340 | LOC108256745,LOC108434245 | coding | downstream | 5668 | 12162455 ~ 12179621 (+) |
bcl2a | bcl2 | coding | downstream | 24998 | 12181785 ~ 12234183 (+) |
hs6st1b | hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 | coding | downstream | 271670 | 12428457 ~ 12499046 (+) |
LOC113541349 | LOC108256200 | coding | downstream | 550152 | 12706939 ~ 12708003 (+) |
ccl34b.4 | LOC100304628 | coding | downstream | 553839 | 12710626 ~ 12712651 (+) |
G330962 | NA | non-coding | upstream | 28273 | 12024576 ~ 12034059 (+) |
G330911 | cdv3 | non-coding | upstream | 116094 | 11944030 ~ 11946238 (+) |
G330908 | NA | non-coding | upstream | 166441 | 11895666 ~ 11895891 (+) |
G330869 | NA | non-coding | upstream | 188140 | 11873992 ~ 11874192 (+) |
G330856 | NA | non-coding | upstream | 235942 | 11826139 ~ 11826390 (+) |
G331003 | NA | non-coding | downstream | 54463 | 12211250 ~ 12273290 (+) |
G331161 | NA | non-coding | downstream | 291975 | 12448762 ~ 12450347 (+) |
G331277 | NA | non-coding | downstream | 576022 | 12732809 ~ 12733703 (+) |
G331280 | NA | non-coding | downstream | 584330 | 12741117 ~ 12741678 (+) |
LOC113541232 | NA | non-coding | downstream | 640574 | 12797361 ~ 12802125 (+) |
ankha | ankh,ankha,LOC108256444,LOC108434238,LOC107724566 | other | upstream | 313773 | 11717415 ~ 11748559 (+) |
acad11 | acad11,LOC107715568,LOC104947469 | other | upstream | 1078123 | 10874209 ~ 10984209 (+) |
G330257 | NA | other | upstream | 1087417 | 10973264 ~ 10974915 (+) |
gli3 | gli3,LOC108444237 | other | upstream | 1293972 | 10595130 ~ 10768360 (+) |
G330038 | NA | other | upstream | 1629468 | 10431333 ~ 10432864 (+) |
G331263 | LOC108256200,LOC100304628 | other | downstream | 550152 | 12706939 ~ 12712678 (+) |
G331476 | NA | other | downstream | 1101107 | 13257894 ~ 13258416 (+) |
stau2 | stau2,LOC107691439 | other | downstream | 2977566 | 15134353 ~ 15314968 (+) |
si:ch73-173p19.2 | LOC108256301 | other | downstream | 3094848 | 15251635 ~ 15265895 (+) |
G332636 | NA | other | downstream | 3409388 | 15566175 ~ 15566663 (+) |