zc2hc1a (zc2hc1a)


Basic Information

Item Value
gene id zc2hc1a
gene name zc2hc1a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19021006 ~ 19033661 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937801.2
GTGCGCGAACGCAAGGCCAGGGAATAACCAATCAGAGGCGTGGATATTGGCTCGCGGGGCGTGTTTCAGGCGAGGCTAGTGGATGCCCGTTGCTACAGCAGCATCTCCTGCTTTCACTGAGAAAGATGGAGGAACTTGACGaaTCTGTGCCCGTCGGCGAGGAGCTGCTGCCGTGCAAAGTGTGCGGAagacgtttttttttaagtgtccTCAAAAAGCACTCGCTTATCTGCCAGAAAACCACAGcgaagagaaggaaagtgttTGACTCGAGCAGACAGAGAGCCGAGGGCACCGACATCCCGTCTGTGAAACCGCTCAAGCCAAAGCCTGAACCACCCAAGAAACCGTCCAACTGGCGCCGAAAGCATGAGGAATTCATCGCCACCATCCGTGCTGCCAAGGGCCTGAGCCAAGTGATGAAAGATGGCGGCCCTCTTCCCCCGCCCCCTCCTCCGTCCTACGATCCAGATTATATCCAGTGCCCGTATTGCCAGAGGCGGTTTAGCGAGAACGCAGCCGATCGGCACATCAAATTCTGTAAGGAACAAGCCTCCCGCATTTCCAACAAGGGGAAATTCCCTGTTAATGACAAAGCCAAGCCTTCAGCCAGGACGCAGTACAAACCTGCCCCAGTGAAGAAGGCGAGTTCTGTAACTTCCACGTCTTCGGTGTCTTCCTCTCGCCTACCTCAGCGTCCAGCCTACGGACAAGGTGGAGGAACTGGAATTTCCAGCACTAAAAGTCCTGCAGGCTCAGTGAGGAATGTGAACGTGTCagcttctttctctccatcccaTGCTAGCTCTGGTGGAGTAACCAGTCCTCCCTCTGGAGATAACACTAAACCCAAAGGTGTGGTTGCTCCAAGTTCACTGAAGAGCATGACCTACGGAGgaggaatgaataaaaaaaaggtctaCAGTGCTAACAACTATAATTCAAGGAACGAGGTGAAAAATGAGCACGTAGTGGACTATTCCACACAGGGGACCAAGTTCTGCCATGAGTGTGGAACCAAGTACCCGGTGGACTGGGCCAAATTCTGCTGTGAATGTGGGGTGAAGAGGATGTGCatttagagacagagagagaaagagagaaagtgacgTCTTTTAATGCTGAATTTCCCATTTTTCCAACCGTCACACTCGTGCCCATGAATTCGTctttctctatttatttatgtttttgccttgttttattccacttgtgTTTATTATCGAAGTGCAATAGGATAAACTActgataattttttaaaaaaatcagaacttacccagtgttgaattaatttCTAAAATCGAATTATATTTCCACCTGATTTCAAACCCGTGGCTTAAAGTCCCGACATCGCACCTCCGTTTCCAAGCAGGAACAATCCGTCATTGcgatttaatttatatttttatttatgcgGATACAATTACAAAGCAAAGCCATTCCCGTTtgtctcttttgtttcattatattatttttttgtgaagttCTTAATGCTCATTTATCTCGACATTTCATGTATTGTATGCAAAATGTATGTTCACTAGATAAGAGCAATCTGTCGCAGCCTGATCACGATTCGTCCCCAGGCATATTCAGACGATCCTGCTTCGAAACGACAACCTGAAATACACCCCAAAAAAACAGCGAATTTTTACATTTCACTCCATGAGCACCTGATCGAAATCGTACGCAGAAAACAGCTTCACAGCCTGAAGGTCTTTATAATCCCGTCGCTGCTCCTCAGCTGGTAGGTCACGTAAGCTAAAGCgccatacacatacatatatatatataaccctTTGTGCTGTTATAGCTGAACGCTACGGCGGTGAAATGCTTATGAACAGTGTATATCACTTCTGTAAGATGGAGTGGGTACAAGGCCCGCTGACAGAGTGGAGGCTGACCCCAGATTTGTCACTGTATATGCACAATGTCACGTGAATAAACATTCATGCGAGTGCTGAGA
>XM_026937802.2
CGTGCGCGAACGCAAGGCCAGGGAATAACCAATCAGAGGCGTGGATATTGGCTCGCGGGGCGTGTTTCAGGCGAGGCTAGTGGATGCCCGTTGCTACAGCAGCATCTCCTGCTTTCACTGAGAAAGATGGAGGAACTTGACGaaTCTGTGCCCGTCGGCGAGGAGCTGCTGCCGTGCAAAGTGTGCGGAagacgtttttttttaagtgtccTCAAAAAGCACTCGCTTATCTGCCAGAAAACCACAGcgaagagaaggaaagtgttTGACTCGAGCAGACAGAGAGCCGAGGGCACCGACATCCCGTCTGTGAAACCGCTCAAGCCAAAGCCTGAACCACCCAAGAAACCGTCCAACTGGCGCCGAAAGCATGAGGAATTCATCGCCACCATCCGTGCTGCCAAGGGCCTGAGCCAAGTGATGAAAGATGGCGGCCCTCTTCCCCCGCCCCCTCCTCCGTCCTACGATCCAGATTATATCCAGTGCCCGTATTGCCAGAGGCGGTTTAGCGAGAACGCAGCCGATCGGCACATCAAATTCTGTAAGGAACAAGCCTCCCGCATTTCCAACAAGGGGAAATTCCCTGTTAATGACAAAGCCAAGCCTTCAGCCAGGACGCAGTACAAACCTGCCCCAGTGAAGAAGGCGAGTTCTGTAACTTCCACGTCTTCGGTGTCTTCCTCTCGCCTACCTCAGCGTCCAGCCTACGGACAAGGAATTTCCAGCACTAAAAGTCCTGCAGGCTCAGTGAGGAATGTGAACGTGTCagcttctttctctccatcccaTGCTAGCTCTGGTGGAGTAACCAGTCCTCCCTCTGGAGATAACACTAAACCCAAAGGTGTGGTTGCTCCAAGTTCACTGAAGAGCATGACCTACGGAGgaggaatgaataaaaaaaaggtctaCAGTGCTAACAACTATAATTCAAGGAACGAGGTGAAAAATGAGCACGTAGTGGACTATTCCACACAGGGGACCAAGTTCTGCCATGAGTGTGGAACCAAGTACCCGGTGGACTGGGCCAAATTCTGCTGTGAATGTGGGGTGAAGAGGATGTGCatttagagacagagagagaaagagagaaagtgacgTCTTTTAATGCTGAATTTCCCATTTTTCCAACCGTCACACTCGTGCCCATGAATTCGTctttctctatttatttatgtttttgccttgttttattccacttgtgTTTATTATCGAAGTGCAATAGGATAAACTActgataattttttaaaaaaatcagaacttacccagtgttgaattaatttCTAAAATCGAATTATATTTCCACCTGATTTCAAACCCGTGGCTTAAAGTCCCGACATCGCACCTCCGTTTCCAAGCAGGAACAATCCGTCATTGcgatttaatttatatttttatttatgcgGATACAATTACAAAGCAAAGCCATTCCCGTTtgtctcttttgtttcattatattatttttttgtgaagttCTTAATGCTCATTTATCTCGACATTTCATGTATTGTATGCAAAATGTATGTTCACTAGATAAGAGCAATCTGTCGCAGCCTGATCACGATTCGTCCCCAGGCATATTCAGACGATCCTGCTTCGAAACGACAACCTGAAATACACCCCAAAAAAACAGCGAATTTTTACATTTCACTCCATGAGCACCTGATCGAAATCGTACGCAGAAAACAGCTTCACAGCCTGAAGGTCTTTATAATCCCGTCGCTGCTCCTCAGCTGGTAGGTCACGTAAGCTAAAGCgccatacacatacatatatatatataaccctTTGTGCTGTTATAGCTGAACGCTACGGCGGTGAAATGCTTATGAACAGTGTATATCACTTCTGTAAGATGGAGTGGGTACAAGGCCCGCTGACAGAGTGGAGGCTGACCCCAGATTTGTCACTGTATATGCACAATGTCACGTGAATAAACATTCATGCGAGTGCTGAGA

Function

symbol description
zc2hc1a Predicted to enable metal ion binding activity. Orthologous to human ZC2HC1A (zinc finger C2HC-type containing 1A).

NR:

description
zinc finger C2HC domain-containing protein 1A isoform X2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937801.2 True 1969 mRNA 0.47 9 19021007 19033661
XM_026937802.2 False 1958 mRNA 0.47 9 19021006 19033661

Neighbor

gene id symbol gene type direction distance location
LOC113541280 LOC108256606 coding upstream 89734 18816234 ~ 18931272 (+)
zfhx4 zfhx4,LOC107666618,LOC107721891,LOC107705239,LOC107590192 coding upstream 232421 18732960 ~ 18788585 (+)
hnf4g hnf4g,LOC107586790,LOC107666612 coding upstream 478246 18530475 ~ 18542760 (+)
LOC113541230 NA coding upstream 493311 18523154 ~ 18527695 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding upstream 497712 18503818 ~ 18523294 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding downstream 27228 19060889 ~ 19328125 (+)
LOC117595764 NA coding downstream 298513 19332174 ~ 19335280 (+)
LOC117595802 NA coding downstream 301365 19335026 ~ 19336650 (+)
ndufb4 ndufb4 coding downstream 358312 19391973 ~ 19395890 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding downstream 396107 19429768 ~ 19436760 (+)
G334575 NA non-coding upstream 87755 18933049 ~ 18933251 (+)
G334573 NA non-coding upstream 88296 18932502 ~ 18932710 (+)
G334386 NA non-coding upstream 167003 18761089 ~ 18854003 (+)
G334345 NA non-coding upstream 282828 18678875 ~ 18738178 (+)
G334371 NA non-coding upstream 294276 18688759 ~ 18726730 (+)
G334733 NA non-coding downstream 312228 19345889 ~ 19351752 (+)
LOC117595782 NA non-coding downstream 487704 19521365 ~ 19522260 (+)
G334806 NA non-coding downstream 527441 19561102 ~ 19589060 (+)
G334888 NA non-coding downstream 671024 19704685 ~ 19707006 (+)
G335214 NA non-coding downstream 732809 19766470 ~ 19766826 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 273529 18712048 ~ 18747477 (+)
G334373 NA other upstream 303053 18693149 ~ 18717953 (+)
mcmdc2 mcmdc2 other upstream 534997 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 697711 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 1027992 17986762 ~ 17993014 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 284196 19317857 ~ 19427936 (+)
G334838 NA other downstream 542450 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 603207 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 644820 19678481 ~ 19683870 (+)
G335231 NA other downstream 754922 19788583 ~ 19789058 (+)

Expression


Co-expression Network