tpk1 (tpk1)


Basic Information

Item Value
gene id tpk1
gene name tpk1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15587302 ~ 15614891 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937805.2
TATCAACATTTAAGGACACAGAGTTTAATCCAGGGACATTGCTGCTCATGAAATAAAACCAAGTCGAGTAATTGTACACCTTGCTGTCAGTCTCAGTCAGCACTTGGTCTGATTAAGTCAAGACACTTCTTGTCAAAAAGgcgGTGAACTGCAGCTGAAATCAGGGACATGGATGAAGAGTTCACTCCTTTAGACTGCCTTCTGtccacagGAACCCAGAAGATTTGCCTGGTTATCCTGAATCAGCCGCTGGAGTCTCGCTTCTTCCATGTGCTCTGGAATAAAGCTGTGATCCGAGCATGTGCAGACGGCGGGGCCAACCATCTTTACCGACTGACAGAGGGCCAAAGGGAAAGttttCTCCCAGATTATATAAGCGGCGATTTTGATTCAATTACGCCTGAGGTCAAAAATTTCTACTCAGAAAAGAAGTGCAGGCTGATTGAAACCGCTGATCAGGACCTGACAGACTTCACTAAGTGCTTGGTCCTCATGCTGGAGGAGATCAAGAAGAGACAAGTGCAGGTGGACACCATTGTCACGCTAGGAGGCTTAGGAGGGCGATTTGATCAGATCATGGCTACAGTGGAGACACTTTTTCACATACAGAAGATGTCAGAGATCCCAGTGGTGGTCATCCAGGATTCCTCTCTGGCCTGTCTGCTCCGAGAGggCAGGAAGCACCAGCTGTATGTGAACACAGGTTTGGAGGGTGAGTGGTGCGGTTTGATCCCAGTGGGTGGCTCCTGCGTCACCAGCACCTCGGGGCTCAAATGGAACTTGGATAACCATGTGCTGGAGTTTGGGAAGCTCATCAGCACATCCAACACGTATGAAGAGCTTGATgccaaagagaagagaaaacctGTGACCATCAGCACAGACAGACCTCTTCTATGGACTATGGGTATTAAaacagagtaaataaataattaggaAGTGGACatataccaatcagccataacattaaaaccactgacaggtgaataacattcattatctcgttacaaaagttgatgtgttggaagcaggaaaaatgggcaagtgtaggGATcgtgctgcgtatggggctgcgtgatagcagactggtcagagtccccatgctgacccctgtccactgccgaaatcGCCTACAATTGGTACGTGAGCATCAgtactggaccatggagcaatggaagaaggtggcctggtccgatgaatcacctttttttata
>XM_026937806.2
ACAGAGTTTAATCCAGGGACATTGCTGCTCATGAAATAAAACCAAGTCGAGTAATTGTACACCTTGCTGTCAGTCTCAGTCAGCACTTGGTCTGATTAAGTCAAGACACTTCTTGTCAAAAAGGTCTCAAAGTATTTAAAgcgGTGAACTGCAGCTGAAATCAGGGACATGGATGAAGAGTTCACTCCTTTAGACTGCCTTCTGtccacagGAACCCAGAAGATTTGCCTGGTTATCCTGAATCAGCCGCTGGAGTCTCGCTTCTTCCATGTGCTCTGGAATAAAGCTGTGATCCGAGCATGTGCAGACGGCGGGGCCAACCATCTTTACCGACTGACAGAGGGCCAAAGGGAAAGttttCTCCCAGATTATATAAGCGGCGATTTTGATTCAATTACGCCTGAGGTCAAAAATTTCTACTCAGAAAAGAAGTGCAGGCTGATTGAAACCGCTGATCAGGACCTGACAGACTTCACTAAGTGCTTGGTCCTCATGCTGGAGGAGATCAAGAAGAGACAAGTGCAGGTGGACACCATTGTCACGCTAGGAGGCTTAGGAGGGCGATTTGATCAGATCATGGCTACAGTGGAGACACTTTTTCACATACAGAAGATGTCAGAGATCCCAGTGGTGGTCATCCAGGATTCCTCTCTGGCCTGTCTGCTCCGAGAGggCAGGAAGCACCAGCTGTATGTGAACACAGGTTTGGAGGGTGAGTGGTGCGGTTTGATCCCAGTGGGTGGCTCCTGCGTCACCAGCACCTCGGGGCTCAAATGGAACTTGGATAACCATGTGCTGGAGTTTGGGAAGCTCATCAGCACATCCAACACGTATGAAGAGCTTGATgccaaagagaagagaaaacctGTGACCATCAGCACAGACAGACCTCTTCTATGGACTATGGGTATTAAaacagagtaaataaataattaggaAGTGGACatataccaatcagccataacattaaaaccactgacaggtgaataacattcattatctcgttacaaaagttgatgtgttggaagcaggaaaaatgggcaagtgtaggGATcgtgctgcgtatggggctgcgtgatagcagactggtcagagtccccatgctgacccctgtccactgccgaaatcGCCTACAATTGGTACGTGAGCATCAgtactggaccatggagcaatggaagaaggtggcctggtccgatgaatcacctttttttata
>XM_026937807.2
aaatAAGCAGGGTTAGATACACGTAAGTGCCCGGATGTGACGGCGGTCTCCTATTAGTTCCGACCAAACCCGGATATGTAGTTCCCCAAAATATACTACAAATAAACGGgcgGTGAACTGCAGCTGAAATCAGGGACATGGATGAAGAGTTCACTCCTTTAGACTGCCTTCTGtccacagGAACCCAGAAGATTTGCCTGGTTATCCTGAATCAGCCGCTGGAGTCTCGCTTCTTCCATGTGCTCTGGAATAAAGCTGTGATCCGAGCATGTGCAGACGGCGGGGCCAACCATCTTTACCGACTGACAGAGGGCCAAAGGGAAAGttttCTCCCAGATTATATAAGCGGCGATTTTGATTCAATTACGCCTGAGGTCAAAAATTTCTACTCAGAAAAGAAGTGCAGGCTGATTGAAACCGCTGATCAGGACCTGACAGACTTCACTAAGTGCTTGGTCCTCATGCTGGAGGAGATCAAGAAGAGACAAGTGCAGGTGGACACCATTGTCACGCTAGGAGGCTTAGGAGGGCGATTTGATCAGATCATGGCTACAGTGGAGACACTTTTTCACATACAGAAGATGTCAGAGATCCCAGTGGTGGTCATCCAGGATTCCTCTCTGGCCTGTCTGCTCCGAGAGggCAGGAAGCACCAGCTGTATGTGAACACAGGTTTGGAGGGTGAGTGGTGCGGTTTGATCCCAGTGGGTGGCTCCTGCGTCACCAGCACCTCGGGGCTCAAATGGAACTTGGATAACCATGTGCTGGAGTTTGGGAAGCTCATCAGCACATCCAACACGTATGAAGAGCTTGATgccaaagagaagagaaaacctGTGACCATCAGCACAGACAGACCTCTTCTATGGACTATGGGTATTAAaacagagtaaataaataattaggaAGTGGACatataccaatcagccataacattaaaaccactgacaggtgaataacattcattatctcgttacaaaagttgatgtgttggaagcaggaaaaatgggcaagtgtaggGATcgtgctgcgtatggggctgcgtgatagcagactggtcagagtccccatgctgacccctgtccactgccgaaatcGCCTACAATTGGTACGTGAGCATCAgtactggaccatggagcaatggaagaaggtggcctggtccgatgaatcacctttttttata
>XM_034297849.1
TGTCGTAATGACGTCACACAGATGCCGGAAGTCATCCAGTTggaggcgGTGAACTGCAGCTGAAATCAGGGACATGGATGAAGAGTTCACTCCTTTAGACTGCCTTCTGtccacagGAACCCAGAAGATTTGCCTGGTTATCCTGAATCAGCCGCTGGAGTCTCGCTTCTTCCATGTGCTCTGGAATAAAGCTGTGATCCGAGCATGTGCAGACGGCGGGGCCAACCATCTTTACCGACTGACAGAGGGCCAAAGGGAAAGttttCTCCCAGATTATATAAGCGGCGATTTTGATTCAATTACGCCTGAGGTCAAAAATTTCTACTCAGAAAAGAAGTGCAGGCTGATTGAAACCGCTGATCAGGACCTGACAGACTTCACTAAGTGCTTGGTCCTCATGCTGGAGGAGATCAAGAAGAGACAAGTGCAGGTGGACACCATTGTCACGCTAGGAGGCTTAGGAGGGCGATTTGATCAGATCATGGCTACAGTGGAGACACTTTTTCACATACAGAAGATGTCAGAGATCCCAGTGGTGGTCATCCAGGATTCCTCTCTGGCCTGTCTGCTCCGAGAGggCAGGAAGCACCAGCTGTATGTGAACACAGGTTTGGAGGGTGAGTGGTGCGGTTTGATCCCAGTGGGTGGCTCCTGCGTCACCAGCACCTCGGGGCTCAAATGGAACTTGGATAACCATGTGCTGGAGTTTGGGAAGCTCATCAGCACATCCAACACGTATGAAGAGCTTGATgccaaagagaagagaaaacctGTGACCATCAGCACAGACAGACCTCTTCTATGGACTATGGGTATTAAaacagagtaaataaataattaggaAGTGGACatataccaatcagccataacattaaaaccactgacaggtgaataacattcattatctcgttacaaaagttgatgtgttggaagcaggaaaaatgggcaagtgtaggGATcgtgctgcgtatggggctgcgtgatagcagactggtcagagtccccatgctgacccctgtccactgccgaaatcGCCTACAATTGGTACGTGAGCATCAgtactggaccatggagcaatggaagaaggtggcctggtccgatgaatcacctttttttata

Function

symbol description
tpk1 Predicted to enable thiamine diphosphokinase activity. Predicted to be involved in thiamine diphosphate biosynthetic process. Predicted to act upstream of or within phosphorylation and thiamine metabolic process. Human ortholog(s) of this gene implicated in inherited metabolic disorder. Orthologous to human TPK1 (thiamin pyrophosphokinase 1).

NR:

description
thiamin pyrophosphokinase splice variant 5

GO:

id name namespace
GO:0006772 thiamine metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009229 thiamine diphosphate biosynthetic process biological_process
GO:0004788 thiamine diphosphokinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00949 thiN, TPK1, THI80; thiamine pyrophosphokinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937805.2 True 1214 mRNA 0.48 9 15587805 15614891
XM_026937806.2 False 1214 mRNA 0.47 9 15587822 15614891
XM_026937807.2 False 1183 mRNA 0.48 9 15587671 15614891
XM_034297849.1 False 1119 mRNA 0.49 9 15587302 15614891

Neighbor

gene id symbol gene type direction distance location
si:ch73-173p19.1 LOC108256550 coding upstream 189775 15382986 ~ 15397527 (+)
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding upstream 457699 15121226 ~ 15129603 (+)
trpa1b trpa1 coding upstream 476988 15084521 ~ 15110314 (+)
eya1 eya1,LOC107657823 coding upstream 739218 14796644 ~ 14848084 (+)
xkr9 xkr9 coding upstream 865725 14714795 ~ 14721577 (+)
panx1a panx1 coding downstream 5257 15620148 ~ 15629965 (+)
hephl1a LOC108256642 coding downstream 462000 16076891 ~ 16096771 (+)
LOC113541322 NA coding downstream 585605 16200496 ~ 16219013 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281,LOC107695383 coding downstream 712094 16326985 ~ 16443144 (+)
c22h8orf34 c23h8orf34,cunh8orf34,LOC103047203 coding downstream 829772 16444663 ~ 16529117 (+)
LOC113541248 NA non-coding upstream 7504 15570863 ~ 15579798 (+)
LOC113541145 NA non-coding upstream 168379 15413872 ~ 15418923 (+)
G332527 NA non-coding upstream 254870 15328614 ~ 15332432 (+)
G332348 NA non-coding upstream 384997 15201817 ~ 15202305 (+)
G332334 NA non-coding upstream 473788 15065975 ~ 15113514 (+)
G332788 NA non-coding downstream 426493 16041384 ~ 16041587 (+)
G332790 LOC108272979,LOC108266882 non-coding downstream 486859 16101750 ~ 16102212 (+)
G332791 NA non-coding downstream 487380 16102271 ~ 16102597 (+)
G332859 NA non-coding downstream 604662 16219553 ~ 16220945 (+)
G333157 NA non-coding downstream 980890 16595781 ~ 16620089 (+)
G332636 NA other upstream 20639 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 272334 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 321407 15251635 ~ 15265895 (+)
G331476 NA other upstream 2328886 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 2874624 12706939 ~ 12712678 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 1485273 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 1670191 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 1921053 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 2146640 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 2371871 17986762 ~ 17993014 (+)

Expression


Co-expression Network