LOC113541039 (LOC108256133)


Basic Information

Item Value
gene id LOC113541039
gene name LOC108256133
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16795010 ~ 16801971 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937808.2
TTCAGCATGGCTTCCTGGGAATGACTGCACATGTGTTTCTGGTGAAATGAAACTCAGGCTATTAAAAAGCCAAAGTGCAAAGCCATCTTCTCAGTTGTGAAGCTTCACTTCTACGAGGAACTAAAGCTactgcagTCATGGCCTCCTCCAGCAGTCTGCTGTGTGAGGAGCAGCTCCAGTGCGCAATTTGTCTAGATGTGTTCACTGATCCAGTGTCTACTCCGTGTGGACACAACTTCTGCATGACCTGTCTCAAAGAATGCTGGGACAACAGTTCATACTGCCAGTGTCCAGTTTGTAAGCAGGATTTTGCTAAAAGGCCTGAGCTTCATGTGAATACGTTCATATCTGGACTAGCTGTTCAGTTCAGGAAGCTGGGTGAGGTGAAATCCAGCAACACGGCGGAGCAGCTCGGCTCTGCGGGTACAAAGGTGCTGTGTGATTGCTGCACAGGGGAAAAGCTCGAGGCTCTAAAGTCCTGTCTGGACTGTGGGGTTTCTTACTGTAACACTCATCTGATGCCTCATAGAACTGCAACTAAACTCAAGAAACACAAACTGATTGATGCTGTGGAGAAGCTGAAGGATTACATCTGCCAGAAACATGAGAGACCCCTGGAGCTGTTCTGTAGAGATGaccggatgtgtgtgtgtcagttctgCACCGAGGGAGATCACAAAACCCACCGCACTGTCCCAATAGAGGAGGAGAGTCAAGCAAAGAAGtCTCAGCCAGGGATGATGCAGTCAGAAGTTCAGCAGATCATCCAGGATCAAATGAGGAAGATTCAGGAAATCAAACACTCTGTAAAACTCCATAATAGAAACATAGAGAAGGAGAAAGTAGACAGTATGAAGGTGTTTGATGATCTGATTCGCTGtgttgagaggaaccaggctgaGCTGCTCAAGATGATGAAGGAAAAGCAGAGAGCAGCAGAGTGGCAGGCTGAAGAGCTCATTAAAGAGCTGGAGGAGGAAATCACTGAGCTAAAGAGGAGAAacactgagctggagcagctctcacacactgacGATCATCTCCACTTCCTGCAGATGTACTCATCCATCTGCAGCCCTAAACACACCAGAAACTGGACTGACATCAGGTTTATCCCTGAGATGAGTGAGGAAACTCTGATGAGAGCTCTGTCTGAGCTTCAGGAACATCTCAGTAAGGAAATGGAGAAACTTTCTGAAATTAAACTGAAGAAAATTCAGCAATAcgcagTGGAAGTGACTCTGGATCCCGATACGGTTCACCCTTACCTCATTTTGTCTGAAGATAGAAAACAAGTGACATGTGGAGACTGTGTGCAGAATTACCCTGATAACCCTCAGAGGTTCAATCGCTGTCCCTGTGTGCTGGGGAAGGAAGGATTCTCCTCAGGGAGATCTTACTATGAGGTACAGGTCAGAGGGAAGACCATGTGGGATTTAGGAGTCGCCCGAGAGTCCATTATCAGGAAGGGAAAGATTACAGCCTGCCCTGAGAATGGATACTGGTCTGTGTGTCTGAGGCATGAGACTGATTATAAGGCTTGTGAGACTCCCTGGATTTCACTCTCTTtgaaacagaagcctgaaaagATCGGGGTGTTTGTGGATTACGAGGAGGGCCTCATCTCCTTCTATGATGTAAAGACTAAGACTTGTATCTACTCTTTCGCTGGTCAGTCTTTCTCTGAGAAACTCTATCCATATTTTAGCCCCTGTCTCAGTGATAAGGGTCATAATTCAGCACCTCTGATTATCAAACCTGTTAAACAGTCTGCATGAAATTCGCTTCCTAAAGACACTAACTTTACACCAATTGATTCACTCTGATGTTAACAAATTATTACTGAGACTCAAGAGATACTGTATTTTTCAATGTTATGGAATTGCTGTTTGTCAGTCTGAAGTAAATCTAAAAGTAAGTGTAAGTGACTTCATCCTGAGAAGGGTTGACTACAATTATAtaaaactgctttttaaaaagaaaaacttttgaCACATCTGTAATTAACGTCATTTAAACTGTAGCTTAATGTAATGCTTAGTGCGTTATGGCAGACTACACCAACTCACTTTCTAcacattaacatgaatatgaatatgtaacaaaaatggaaaacatcagtgaataaataaataaaatgaaa
>XM_026937809.2
TTCAGCATGGCTTCCTGGGAATGACTGCACATGTGTTTCTGGTGAAATGAAACTCAGGCTATTAAAAAGCCAAAGTGCAAAGCCATCTTCTCAGTTGTGAAGCTTCACTTCTACGAGGAACTAAAGCTactgcagTCATGGCCTCCTCCAGCAGTCTGCTGTGTGAGGAGCAGCTCCAGTGCGCAATTTGTCTAGATGTGTTCACTGATCCAGTGTCTACTCCGTGTGGACACAACTTCTGCATGACCTGTCTCAAAGAATGCTGGGACAACAGTTCATACTGCCAGTGTCCAGTTTGTAAGCAGGATTTTGCTAAAAGGCCTGAGCTTCATGTGAATACGTTCATATCTGGACTAGCTGTTCAGTTCAGGAAGCTGGGTGAGGTGAAATCCAGCAACACGGCGGAGCAGCTCGGCTCTGCGGGTACAAAGGTGCTGTGTGATTGCTGCACAGGGGAAAAGCTCGAGGCTCTAAAGTCCTGTCTGGACTGTGGGGTTTCTTACTGTAACACTCATCTGATGCCTCATAGAACTGCAACTAAACTCAAGAAACACAAACTGATTGATGCTGTGGAGAAGCTGAAGGATTACATCTGCCAGAAACATGAGAGACCCCTGGAGCTGTTCTGTAGAGATGaccggatgtgtgtgtgtcagttctgCACCGAGGGAGATCACAAAACCCACCGCACTGTCCCAATAGAGGAGGAGAGTCAAGCAAAGAAGtCTCAGCCAGGGATGATGCAGTCAGAAGTTCAGCAGATCATCCAGGATCAAATGAGGAAGATTCAGGAAATCAAACACTCTGTAAAACTCCATAATaggaaccaggctgaGCTGCTCAAGATGATGAAGGAAAAGCAGAGAGCAGCAGAGTGGCAGGCTGAAGAGCTCATTAAAGAGCTGGAGGAGGAAATCACTGAGCTAAAGAGGAGAAacactgagctggagcagctctcacacactgacGATCATCTCCACTTCCTGCAGATGTACTCATCCATCTGCAGCCCTAAACACACCAGAAACTGGACTGACATCAGGTTTATCCCTGAGATGAGTGAGGAAACTCTGATGAGAGCTCTGTCTGAGCTTCAGGAACATCTCAGTAAGGAAATGGAGAAACTTTCTGAAATTAAACTGAAGAAAATTCAGCAATAcgcagTGGAAGTGACTCTGGATCCCGATACGGTTCACCCTTACCTCATTTTGTCTGAAGATAGAAAACAAGTGACATGTGGAGACTGTGTGCAGAATTACCCTGATAACCCTCAGAGGTTCAATCGCTGTCCCTGTGTGCTGGGGAAGGAAGGATTCTCCTCAGGGAGATCTTACTATGAGGTACAGGTCAGAGGGAAGACCATGTGGGATTTAGGAGTCGCCCGAGAGTCCATTATCAGGAAGGGAAAGATTACAGCCTGCCCTGAGAATGGATACTGGTCTGTGTGTCTGAGGCATGAGACTGATTATAAGGCTTGTGAGACTCCCTGGATTTCACTCTCTTtgaaacagaagcctgaaaagATCGGGGTGTTTGTGGATTACGAGGAGGGCCTCATCTCCTTCTATGATGTAAAGACTAAGACTTGTATCTACTCTTTCGCTGGTCAGTCTTTCTCTGAGAAACTCTATCCATATTTTAGCCCCTGTCTCAGTGATAAGGGTCATAATTCAGCACCTCTGATTATCAAACCTGTTAAACAGTCTGCATGAAATTCGCTTCCTAAAGACACTAACTTTACACCAATTGATTCACTCTGATGTTAACAAATTATTACTGAGACTCAAGAGATACTGTATTTTTCAATGTTATGGAATTGCTGTTTGTCAGTCTGAAGTAAATCTAAAAGTAAGTGTAAGTGACTTCATCCTGAGAAGGGTTGACTACAATTATAtaaaactgctttttaaaaagaaaaacttttgaCACATCTGTAATTAACGTCATTTAAACTGTAGCTTAATGTAATGCTTAGTGCGTTATGGCAGACTACACCAACTCACTTTCTAcacattaacatgaatatgaatatgtaacaaaaatggaaaacatcagtgaataaataaataaaatgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937808.2 True 2143 mRNA 0.44 7 16795010 16801971
XM_026937809.2 False 2077 mRNA 0.44 7 16795010 16801971

Neighbor

gene id symbol gene type direction distance location
csrnp1b csrnp1,csrnp1b coding downstream 95060 16687722 ~ 16699950 (-)
arfgef1 arfgef1,LOC107686689,LOC107727224,LOC107595140,LOC107584936 coding downstream 520499 16220089 ~ 16274511 (-)
relch kiaa1468,zgc:66014,LOC107584935,LOC107595141 coding downstream 594559 16145056 ~ 16200451 (-)
tnfrsf11a tnfrsf11a coding downstream 654054 16125117 ~ 16140956 (-)
LOC113541324 LOC108256119 coding downstream 679097 16096981 ~ 16115913 (-)
slc22a13b slc22a13 coding upstream 18258 16820229 ~ 16829385 (-)
map3k22 map3k20,LOC108256334,LOC108439325,LOC107758305,LOC107670426,LOC107741004,LOC107701654 coding upstream 91013 16892984 ~ 16952065 (-)
dlec1 dlec1 coding upstream 158882 16960853 ~ 16989036 (-)
vill vill coding upstream 213653 17015624 ~ 17028893 (-)
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding upstream 228889 17030860 ~ 17073642 (-)
LOC117595808 NA non-coding downstream 34579 16737168 ~ 16760431 (-)
G333197 slco5a1,LOC108256392,LOC105018377,LOC106569033,LOC107690218 non-coding downstream 154243 16639164 ~ 16640767 (-)
G333175 sulf1 non-coding downstream 172997 16620758 ~ 16622013 (-)
LOC117595797 NA non-coding downstream 723512 16060280 ~ 16071498 (-)
G332797 NA non-coding downstream 753498 16041312 ~ 16041512 (-)
G333427 NA non-coding upstream 88213 16890184 ~ 16890991 (-)
G333428 NA non-coding upstream 89157 16891128 ~ 16891364 (-)
G333429 NA non-coding upstream 89466 16891437 ~ 16891827 (-)
G333434 acaa1 non-coding upstream 151754 16953725 ~ 16955463 (-)
G333417 NA non-coding upstream 205856 17007827 ~ 17008733 (-)
cpa6 cpa6,LOC106579545 other downstream 482094 16281271 ~ 16312916 (-)
sec61g NA other downstream 1176168 15615498 ~ 15618842 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 1729200 14962837 ~ 15065810 (-)
LOC113541102 msc other downstream 1857606 14932995 ~ 14937404 (-)
LOC113541105 NA other downstream 3032395 13757658 ~ 13762615 (-)
oxsr1b oxsr1,oxsr1b other upstream 27819 16829790 ~ 16879884 (-)
myd88 myd88 other upstream 83180 16885151 ~ 16889424 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 314127 17116098 ~ 17139685 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other upstream 383553 17185524 ~ 17239116 (-)
LOC113541127 LOC108256571 other upstream 1105613 17907584 ~ 17908812 (-)

Expression


Co-expression Network