rrs1 (rrs1,LOC107590198,LOC107721889)


Basic Information

Item Value
gene id rrs1
gene name rrs1,LOC107590198,LOC107721889
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18420986 ~ 18423560 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937813.2
agaagaagaagaggagcaCGTGGGAATCTTGTATTCAAGATGGCGGCGTGCAGTATTGAAGACGTGCTCGCTAAAGCCGAAAAAGACGAGGCAGAAAAGTTAAAAAGTATCACAGTACATAAAGAATTAGACCTCGAGTTTGATATCGGAAACTTGCTGGCGTTGGACAAGAACTCGATAAACACTCGGGAGTTTAAACAGCAGAATAAAGACGAGTTTCTTCGCTCACTGGCTCGGGACAACACTCAGCTGCTCATTAATGAGATCTGGAAACATCCAAGCGAGAAGGTAGAGGAGGTTATCGTGGTCAAGCTGCCGGACCCCATCACCCAGTTACCCCGAGAAAAGCCCGCTCCCAAGCCGAGACCCCCGACCAAATGGGAGCAGTTCGCCAAACTGAAGGGCAtccagaagaaaaagaagactaATCTGGTGTGGGATGAAGTGCACAAGGAGTGGAAAAGGCGCTGGGGCTATAAACGAGCCAAAGATGACACGAAGGAATGGCTCATAGAGGTGCCTGAAAACGCTGATCCAAATGAGGACCAGTTCGCCAAAAGGAACAAGGCCAAGAAAGAGCGAGTGGCCAAGAATGAGTTTAACCGCCTGAAGAACATCGCCAGGGCGCAGAAGCTGAAAGTCCCCGGCGTGGGACTCGCTCCAAGCAGCCAGCAGTCCAAAGCAGAGCTGGCCAAAGCTGTGAGTGTGGCCAAAACCTCCACAGCTTCAGTGGGGAAGTTCCAGGAGCGACTTCCTAAAGAGAAGCCGCAGAGAAACACAGGCAAGAAGAGACAGTTCCAGCCTCTGATCGGTGACTTCGCTGGAGAGAAGCAGAAGCACCTGGAGATGCTCAAAGTGATGGAGAGCAAGAGACCTCGCCTGGACATCACCAAAGCGGTGAATAAGCAGATGAGGGAGGAAGACAGTGAAGCTTCGGAAAGGAGGAGGGGGAAGAAGGGACGGAGAGGGAACGCGCCTGGAAAAGGGAGACGAAATGCCCCAAGTGGGAAAGGAAAAGGGAAAGGGAAGGGGGGAGCTTCCAAAGGCAAAGGACGAAAACCTGCAATGAAGCAGGGCAAACGTTAAAATAGACTCCTAAAGCTTTAGTGAAATCTGGGACTTGTATTTGAACCCCAAACACACCTGAGCCTGTCGATGAGCATCACTCAGAAATAaagtacttttccttgtcactggggtgctGTCATCCATCATACATCtttattatgtatgttttaCTTGGAAAGATGCATCGGTGGTCCTTAAGGATAAATGATGTActtctaaattatttttaaaggtgaaaaatgcatattaaaggtacaaaagatatccCTGTGATGATACTCCTCCAGAGACAAGTGAAGAtacagtttaatgttttttatttctgagaatgtaCACACTGATATGATAATATTGCAATAATACTTTTCTGATCATTTTGTCGGTGTTTTCTGCACTTCTAAGAGAATAACCAACTCTTATTGCagtaacagattttttttttcatatttttcctgttttatgaatggaaaaaaaactgccCTTTGACGCTTTGTCAGCAAATCATACCGTTCTGAAATAATGCAATGTACATCAAATATCGTTAGAACAACTTCAGATGTAATGATGTGaatatttttgctcttttgtaACTAAAGCTGGAACAGAATAGATTTTGGACTGGAACCACCAGAACTATTACATGGGACACATCGCAGCCCTGTCCTGCATAGTTTAGTGCGTGATTTAATCTTAATTTATCGCTGTCCAGATGTTTAGTAGCATCTGGATATTAAAACTAGACGCAGGAATCTTTCAGCATGGTTGATGTTCAAAAACAAGAACCATGCATCCCTGCCTGAAATATAGAGTTTAGTGTTTGAGATACTGGGATATTGGATGTACTTTACTTGTCATGACATGACTCGAAGTGCCTTGTCTTATTTTGACGAGTAGCGATAcgtgatatggcaaaaatagTTACTTGAAGGTGCCATTACAATACTCAGTATGTATTACAAAATTTAGTTTTGCTAACAAAGAACCAACAAAGCATTGTATCTATACAGCCAGTGATTTTTATTCAAAGTTTACATTAAAGATAAAATATTTGAATCAGAAAAATTGGTAAATAATTAAGGGGAAATAAGGGGGCGATGTTATCAGCAAGTGACAGTGGCGTTTCAAAAGCACTGACATACGCTCAGAAAAGGTTtgtcttaatattaatatattagaatactgatatcatcatcatcatcatcattatcatcgtCTTGCCCAGCCACATTGATTaggattttgaaatgaaaatctgaaaagatttaatttttttttttattatttttttgtgtgttgtcgGCAATTTagaatatcagaatgtattcatattttttctaaaattacATGAGATGTATATTAAACTGTTTTATGCGTCATACTTGTAATTGTTATCCGGCATGAGAAAACCAGAGGATGTTTGTTATTGGTGCTTCAGATTCTGTCACGTCTGTGAAAACTGATTTTGCTTTTCACAAAGGtttttgaataaatataatgatattatCGA

Function

symbol description
rrs1 Predicted to be involved in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ribosomal large subunit biogenesis; and ribosomal large subunit export from nucleus. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Is expressed in several structures, including eye; midbrain; musculature system; pectoral fin bud; and segmental plate. Orthologous to human RRS1 (ribosome biogenesis regulator 1 homolog).

NR:

description
ribosome biogenesis regulatory protein homolog

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14852 RRS1; regulator of ribosome biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937813.2 True 2575 mRNA 0.41 1 18420986 18423560

Neighbor

gene id symbol gene type direction distance location
trim55b trim55,LOC107590338,LOC107663638 coding upstream 30121 18380291 ~ 18390865 (+)
trnaa-agc_16 NA coding upstream 40972 18379942 ~ 18380014 (+)
trnaa-agc_15 NA coding upstream 41612 18379302 ~ 18379374 (+)
dnajc5b dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861 coding upstream 42790 18372722 ~ 18378196 (+)
bhlhe22 bhlhe22 coding upstream 203780 18214863 ~ 18217206 (+)
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding downstream 29547 18453107 ~ 18467245 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding downstream 80258 18503818 ~ 18523294 (+)
LOC113541230 NA coding downstream 99594 18523154 ~ 18527695 (+)
hnf4g hnf4g,LOC107586790,LOC107666612 coding downstream 106915 18530475 ~ 18542760 (+)
zfhx4 zfhx4,LOC107666618,LOC107721891,LOC107705239,LOC107590192 coding downstream 309400 18732960 ~ 18788585 (+)
G334120 NA non-coding upstream 96101 18296643 ~ 18324885 (+)
G334077 NA non-coding upstream 217306 18203063 ~ 18203680 (+)
G334078 NA non-coding upstream 218081 18200395 ~ 18202905 (+)
G334032 NA non-coding upstream 312182 18085319 ~ 18108804 (+)
G334028 NA non-coding upstream 341616 18079151 ~ 18079370 (+)
G334209 NA non-coding downstream 12161 18435721 ~ 18437406 (+)
G334210 NA non-coding downstream 15589 18439149 ~ 18439446 (+)
G334211 mybl1 non-coding downstream 16695 18440255 ~ 18440656 (+)
G334219 NA non-coding downstream 77223 18500783 ~ 18530907 (+)
LOC113541128 NA non-coding downstream 119802 18543362 ~ 18681823 (+)
mtfr1 mtfr1 other upstream 97691 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 427972 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 624465 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 878599 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 1118982 17285082 ~ 17302004 (+)
mcmdc2 mcmdc2 other downstream 44318 18467878 ~ 18486009 (+)
G334373 NA other downstream 269589 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 288488 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 894297 19317857 ~ 19427936 (+)
G334838 NA other downstream 1152551 19576111 ~ 19577073 (+)

Expression


Co-expression Network