lnx2a (lnx2,lnx2a,LOC107716412,LOC107584972,LOC107701681,LOC107591221)


Basic Information

Item Value
gene id lnx2a
gene name lnx2,lnx2a,LOC107716412,LOC107584972,LOC107701681,LOC107591221
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17450723 ~ 17466452 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937819.2
ACAGAGATAAAGACACAGCAGAGTCTCtggctgtgtttttctttctttcattctttctttctttcattaaaaaaaaacatgatggtgGCCACGGATGCTGGTTGCCATGGATACTCAGAAAGGAGGAATGGAGGCCCATGGAGCGGACGATCCCATAAGCAGTCAGTTGAGTGTGTCGAGTGGCGTGATGGGCAGCCTGGGCGAAGGTGTGGATGCCAGCATGGTTAGCGAGGCTCTCCTGGAGGCCCTGTGTCCGGAGTGTGGGCAGATCCACCGCTCCTGGGAGAACCACCTGTACAACTACAGGCTGGAGGTGGATGATGACCTGGTGTGTCACATCTGCCTGCAGCCTCTGGTGCAGCCCTTGGACACGCCGTGTGGCCACACGTTCTGTGCCCGCTGCCTGCGCAGCTTCCTGCAGGAGCGTGACTTCTGCCCACTGGATCGTGCCAGGCTGCAGCTGCAGGGCTGCCGACGCTCCAGCATCCTGGTGCACAAGCTGCTGGATAAACTGTCCATCACGTGCCCGCTCACACCAGTCTGCTCCCTCAGCATGCCACGCTGTGACCTGGAGGCACATCTCaaacacaggtgtccTGGGACACAGGGTCAGAGAGCGGTCCTGGAGGGCACCCAGGTTAAGGGATGTGAGGACAAAACCATGGTGACTGACACCTCCAAATCTCCACAGACCGAGCTGAGGGAGAGCACATCGCCACCCCCTGCTGGCTCCAACgcctgcagcagcagcagcagtgtgccTGTGTGGACAGAGGAGCGAGGCGTCGACAACCCTGCCTTTGAGGAGAGTACCGAGGAGGATAGTGTCCAAGGTTTGGAGCGCGTCCCTCCACGTGTAAAGCGTCCCCTCAGTAACCCCTGCATCCACCTTCTCCGTACCGGCAGCTCCGCGTCATCAGGGTGGGATTTTGTCGAGTCTCTGCCCTTATCAGCAGAAGAAGGTTGTGTAAAGCTGCCATCTTTGCCTGAAGGCGAGATCACCACCATTGAGATTCATCGCTCAAACCCTTATGTGGAGTTGGGTATAAGCATAGTTGGTGGCAATGAGACGCCTCTTATAAACATTGTAATCCAGGAGGTGTATCGTGACGGTGTCATTGCTCGAGATGGGAGGCTGCTGGCTGGTGACCAAATACTACAGGTGAACAATGTAGACATCAGTAACACCCCACATAACTTCGCCCGTTCCACACTAGCTCGTCCGTGTACCACCTTACAGCTGACCGTGCTCAGAGAGCGCCGCTGCAGCGCCCGACCACCCCCAGTCCCCGCTGTTCCTGCCCCCGCAGTGCCAGAAGGCAGCCCAGGTAGCCTGCGTATCACCCTGAACAAGCGGGACTCTACTGAACAGCTGGGCATCAAGCTGGTGCGGCGCACAGACGAGCCCGGCGTGTTCGTGCTGGAACTGCTGGAGGGGGGGTTGGCCGCCAAGGACGGACGCCTGCACAGCAACGACAGAGTGCTGGCGGTGAACGAGCACGACCTGAGGCACGGCACACCTGAGCAGGCCGCACAGATTATacagGccagtggagagagagtgaatcTGCTGATCAGCAGGCCTGGCAAGCAGACCATGGCTGTACACACGGGCTCGAGTTCAGTCCGCGATAGCTGGTGCCATGAACACTTCCTGCCTCCGGCGCACCACACGGCTGTGCCAAATCCCACTCCCAACCTGCAGCTCAGTCGCTCTTCCACATACAGGGACCTCTCTCAGTGTGTCACCTGCAAGGAAAAACACATCACTGTGAAGAAGGAGCCGCACGAGTCACTGGGGATGACCGTGGCTGGGGGGCGGGGCAGTAAGAGTGGCGAGCTGCCCATCTTCGTCACGAGCGTCCAACCGCATGGCTGCCTGTCACGGGACGGGCGAATCAAACGGGGAGACGTGCTGCTGAGCATCAACGGTCAGGACTTGACATCCCTGAGCCACAGCGACGCGGTGGGCACGCTGAAATCCAGCGCCGCCTCGTGTTCTGTGCAGCTGAGGGCGCTGGAGGTGAGCATGGTGGACGAGCCGGGACAGGACGAGGGCCTTCTGCCTCACCACGAGAGCGACTACGACGCCAGCTGGTCACCGTCCTGGGTCATGTGGCTCGGCCTGCCCAGCTACCTGAACAGTAGCCATGAGATTGTCCTGCGCCGGAGTCACCCTGGCAGCTGGGGCTTCAGCATTGTCGGAGGTTACGAGGACAACCACATCAACCAGGCGTTCTTCATCAAGACCATTGTGTTAGGAACTCCTGCCTATTACGACGGCCGGCTGAAGTGTGGTGACATGATCGTGGCAGTGAACGGACTTCCCACAGCAGGTATGAGTCACTCGGCCCTCGTGCCCATGCTGAAGGAGCAGCGCAGTCGGGTGGCGCTCACCGTCATCTCCTGGCCTGGTAGCCTGGCGTAGTCTCTCCGTCCTCGCATCCAAGCGTTTTATCATTCCTGTGTCCCTTCTGCTCTGCCACGGATGCCAtagtgtcagtgtgagtctcAAAAACTTGAACGCTTCACTCGATGCTGAATAAAACCTGGCCTTAGAGAACCCTGCCATGCCCACGAGGGAGGCCCCGCCCCTCTGGAACGCAGCCTTAAGGCCTTCTCATGACTCCACCCTGCCAGGGGTTTTATATATAGATGTtatctctatctgtgtgtgtgtgagaatacgAGTGAGGATGTttgaatatgtgtatgtgtacaggtgtttaataaataaatc
>XM_026937820.2
AGAGGAGCCACGGAGCGCATAGAGACCTGTCGCGACCGAAGCGGATGCGGCGGATGTGACCGAAATCCTCAACATCGTCCCCTTTCGGGACAGGAATTTATCGCTTGGAGGAAGCGCCCGATAAGGCCCATGGAGCGGACGATCCCATAAGCAGTCAGTTGAGTGTGTCGAGTGGCGTGATGGGCAGCCTGGGCGAAGGTGTGGATGCCAGCATGGTTAGCGAGGCTCTCCTGGAGGCCCTGTGTCCGGAGTGTGGGCAGATCCACCGCTCCTGGGAGAACCACCTGTACAACTACAGGCTGGAGGTGGATGATGACCTGGTGTGTCACATCTGCCTGCAGCCTCTGGTGCAGCCCTTGGACACGCCGTGTGGCCACACGTTCTGTGCCCGCTGCCTGCGCAGCTTCCTGCAGGAGCGTGACTTCTGCCCACTGGATCGTGCCAGGCTGCAGCTGCAGGGCTGCCGACGCTCCAGCATCCTGGTGCACAAGCTGCTGGATAAACTGTCCATCACGTGCCCGCTCACACCAGTCTGCTCCCTCAGCATGCCACGCTGTGACCTGGAGGCACATCTCaaacacaggtgtccTGGGACACAGGGTCAGAGAGCGGTCCTGGAGGGCACCCAGGTTAAGGGATGTGAGGACAAAACCATGGTGACTGACACCTCCAAATCTCCACAGACCGAGCTGAGGGAGAGCACATCGCCACCCCCTGCTGGCTCCAACgcctgcagcagcagcagcagtgtgccTGTGTGGACAGAGGAGCGAGGCGTCGACAACCCTGCCTTTGAGGAGAGTACCGAGGAGGATAGTGTCCAAGGTTTGGAGCGCGTCCCTCCACGTGTAAAGCGTCCCCTCAGTAACCCCTGCATCCACCTTCTCCGTACCGGCAGCTCCGCGTCATCAGGGTGGGATTTTGTCGAGTCTCTGCCCTTATCAGCAGAAGAAGGTTGTGTAAAGCTGCCATCTTTGCCTGAAGGCGAGATCACCACCATTGAGATTCATCGCTCAAACCCTTATGTGGAGTTGGGTATAAGCATAGTTGGTGGCAATGAGACGCCTCTTATAAACATTGTAATCCAGGAGGTGTATCGTGACGGTGTCATTGCTCGAGATGGGAGGCTGCTGGCTGGTGACCAAATACTACAGGTGAACAATGTAGACATCAGTAACACCCCACATAACTTCGCCCGTTCCACACTAGCTCGTCCGTGTACCACCTTACAGCTGACCGTGCTCAGAGAGCGCCGCTGCAGCGCCCGACCACCCCCAGTCCCCGCTGTTCCTGCCCCCGCAGTGCCAGAAGGCAGCCCAGGTAGCCTGCGTATCACCCTGAACAAGCGGGACTCTACTGAACAGCTGGGCATCAAGCTGGTGCGGCGCACAGACGAGCCCGGCGTGTTCGTGCTGGAACTGCTGGAGGGGGGGTTGGCCGCCAAGGACGGACGCCTGCACAGCAACGACAGAGTGCTGGCGGTGAACGAGCACGACCTGAGGCACGGCACACCTGAGCAGGCCGCACAGATTATacagGccagtggagagagagtgaatcTGCTGATCAGCAGGCCTGGCAAGCAGACCATGGCTGTACACACGGGCTCGAGTTCAGTCCGCGATAGCTGGTGCCATGAACACTTCCTGCCTCCGGCGCACCACACGGCTGTGCCAAATCCCACTCCCAACCTGCAGCTCAGTCGCTCTTCCACATACAGGGACCTCTCTCAGTGTGTCACCTGCAAGGAAAAACACATCACTGTGAAGAAGGAGCCGCACGAGTCACTGGGGATGACCGTGGCTGGGGGGCGGGGCAGTAAGAGTGGCGAGCTGCCCATCTTCGTCACGAGCGTCCAACCGCATGGCTGCCTGTCACGGGACGGGCGAATCAAACGGGGAGACGTGCTGCTGAGCATCAACGGTCAGGACTTGACATCCCTGAGCCACAGCGACGCGGTGGGCACGCTGAAATCCAGCGCCGCCTCGTGTTCTGTGCAGCTGAGGGCGCTGGAGGTGAGCATGGTGGACGAGCCGGGACAGGACGAGGGCCTTCTGCCTCACCACGAGAGCGACTACGACGCCAGCTGGTCACCGTCCTGGGTCATGTGGCTCGGCCTGCCCAGCTACCTGAACAGTAGCCATGAGATTGTCCTGCGCCGGAGTCACCCTGGCAGCTGGGGCTTCAGCATTGTCGGAGGTTACGAGGACAACCACATCAACCAGGCGTTCTTCATCAAGACCATTGTGTTAGGAACTCCTGCCTATTACGACGGCCGGCTGAAGTGTGGTGACATGATCGTGGCAGTGAACGGACTTCCCACAGCAGGTATGAGTCACTCGGCCCTCGTGCCCATGCTGAAGGAGCAGCGCAGTCGGGTGGCGCTCACCGTCATCTCCTGGCCTGGTAGCCTGGCGTAGTCTCTCCGTCCTCGCATCCAAGCGTTTTATCATTCCTGTGTCCCTTCTGCTCTGCCACGGATGCCAtagtgtcagtgtgagtctcAAAAACTTGAACGCTTCACTCGATGCTGAATAAAACCTGGCCTTAGAGAACCCTGCCATGCCCACGAGGGAGGCCCCGCCCCTCTGGAACGCAGCCTTAAGGCCTTCTCATGACTCCACCCTGCCAGGGGTTTTATATATAGATGTtatctctatctgtgtgtgtgtgagaatacgAGTGAGGATGTttgaatatgtgtatgtgtacaggtgtttaataaataaatc

Function

symbol description
lnx2a Enables ubiquitin protein ligase activity. Acts upstream of or within exocrine pancreas development and protein phosphopantetheinylation. Is expressed in central nervous system; endoderm; and pancreatic system. Orthologous to human LNX2 (ligand of numb-protein X 2).
lnx2 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination.

NR:

description
ligand of Numb protein X 2-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10692 LNX1_2; ligand of Numb protein X 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937819.2 True 2740 mRNA 0.58 11 17452164 17466452
XM_026937820.2 False 2732 mRNA 0.59 11 17450723 17466452

Neighbor

gene id symbol gene type direction distance location
urad urad coding upstream 15898 17432046 ~ 17434825 (+)
ccdc191 ccdc191 coding upstream 60084 17378301 ~ 17390639 (+)
drd3 drd3 coding upstream 97414 17336192 ~ 17353309 (+)
si:ch211-161h7.8 LOC108256135 coding upstream 117214 17329834 ~ 17333509 (+)
fam162a NA coding upstream 135023 17310721 ~ 17315700 (+)
usp12a usp12,usp12a,LOC107705210,LOC107584971,LOC107591222,LOC107654221 coding downstream 17241 17483693 ~ 17492318 (+)
gpr12 gpr12,LOC107701646,LOC107716385,LOC107654195,LOC107705188 coding downstream 29625 17496077 ~ 17503703 (+)
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding downstream 77371 17543823 ~ 17605193 (+)
spice1 spice1 coding downstream 155494 17621946 ~ 17629485 (+)
LOC113541191 cfap44 coding downstream 169931 17636383 ~ 17653613 (+)
G333582 NA non-coding upstream 3680 17446185 ~ 17447043 (+)
G333548 NA non-coding upstream 87648 17362871 ~ 17363075 (+)
G333360 NA non-coding upstream 264048 17186129 ~ 17186675 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 552868 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 560562 16888906 ~ 16890161 (+)
G333787 NA non-coding downstream 201184 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 203964 17670416 ~ 17670625 (+)
G333779 usf3 non-coding downstream 241270 17707722 ~ 17712380 (+)
G333795 NA non-coding downstream 274949 17741401 ~ 17756282 (+)
G333797 NA non-coding downstream 289873 17756325 ~ 17756542 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 148719 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 340696 17100164 ~ 17110027 (+)
G332636 NA other upstream 1884060 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 2135755 15134353 ~ 15314968 (+)
rnf6 rnf6,LOC106590444 other downstream 69492 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 295079 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 520310 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 848902 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 1001426 18467878 ~ 18486009 (+)

Expression


Co-expression Network