amer2 (amer2)



Basic Information


Item Value
gene id amer2
gene name amer2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19600565 ~ 19603770 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026937824.2
GAGAAGGATCTGCGACACTGACAGGGTGAAGAAGGGGGAGGTGGGAATGGTGGAGGCGGAGGGAAAAGAGCCCTGGTTTGCCTCTAACGCTGACGAAAGCAGCTTAGCCCTCCCAGTTACCATAGAGACCGTCATGAGCAGCtgccagagaaagagagcgagagaaaagaACACCAACAGGCGAAAGCAGGAGGCagaaccacagagagagagagagtcggaGTGACGGAGTAAAGGATAATAAAAGGAGTTAGAAAGAATACTGAAGCAGACATAATGGAAATACAGATCAGTTGCAGTGAACCGCCTTCGTGCGACCCACAGCCATCCGGAAAGATCAACAAAGCTGCCTTCAAACTGTTCGGCAAGCGCAGGTCCGGCAGCGGTATGCCGAGCATCTTCTCCATCAGGAACAAAGGGGACGCAACTGACAAGGAGCTCGTTAGAAGCAAAACCCACGATGGCTTAACGACAACAGATGAGCTGTCCGAGTTGGAGGGCCACGGGAAAGAAGAGTCAGCCAGCAGTGACCATCTGAACAGTGCCGCTGCTGCTCCTGTGTGTAATGCCATCACCAAATCTTTCAGCTTCTTCTCCTTGCTGCGGCGCAACAGCTCTCGCATGGGTGACAGGGCGGCTACGCTGGGGCAACGAGGACGTGGGCTGAAGGGGCTGTTCAACAGCATACGCTGGCGCCGTAAACCTCCATCGCGTGACGATTCGATCGAAATCCAGGACATTGTCAAAGAAACAAAAGGAGTCGATTTGATCTTGTCCTGCAGTTCCAAAAACGTGGACGTAGAAAACGTGACGCTTACGCGGGAGCCCCCGATACAAATATTACAAGACAATGCTGAGACATGGAAGAAACCCTCTTTGCAGGATAGTAATGAGGAATGCGTGAAGAGTTCACctgttctggtgcaaccagttgcTGAGGAGTCTCCAGCTCCGTCTCCGCTCACTGTTCAGACACAGGAACCTCTCAGAGCCAAACATGGCAGTCCAGTCCATCTTGCTTCCATGACACCTCCGCAGGATCACAGCTCGGTCGACCCACCATCTGAGGATCGCCTGTGCTCCATGTTCACTGACGTCACTTCGCTCAAAAGCTTTGATTCATTAACCGGTTGCGGAGACATCATCGCTGATCCAGAAGAGGACTCTGGGAACGGAGGCAGTGTCACCAGCAGTGGAACAGGAAGCAGCAATGGGGGGCTCCAAGTAAGCGCTGAGAGATGTTCCCCGGCTAAACCTCTTCCTCCACAAGTGACTGGTCTAATGTCAATGTCCGCGTACACGCCGTCCCGTCATCGAGTTTGTCCACCGACTAAAACTCCACAAGGCAGCGGGATAGTGGCCTACATGGGTGGTGGAGAGGAAATGGCCAGTCCGGAAGGTGTAGATGATGCGGATATGCAAGGACTTTGGCACATGCTCCCTCAGAAAGGGGAGGATTCCCCAGCTCTACCTCACCTGCCAACTCGGCAGGACAAACGACTTCCTCAGGTAAAAAGTCTGGGGCTTAGTAAGATTCCTGTGAGTGGAAGCAGCAGAGCAGgcaaacaacaacagcagcagctgaatCGCCCTTCTCCTCCACCCATTGATAAAGATCTCCAGGACATCCCACCCAGTGACGAGGGCTACTGGGACTCTCCGACACCCGGACCAGAGGATGAGGACAGCGGCTTCCTGCAGCGCGACGGCCTACCGAGGGATAGCTGCTCAGGAGATGCGCTTTATGACCTCTACGACCTCGACAGTCCTGGCACTGTCGGCTCAGATGACGATGACACGATTTCACCTACACCTTCTACGGGTGACCTGAATATGACTCCGCCTTCTCAGAAACCATCTTGTTCTTCCTTCCGTTCCATTAAGGGCAGCACAAGTCTTCCACGAGAGTCTAAGATTCCCATCAGCGTGAGGCAAAAGCCGCCTTCTCACTCTTCCAGCCAAGGGGCGTTGTCCTCTCCAGTCAGCCCGACCTCGAACAACCCTTCAGACCCTTCGTCAAAGACTAACACGCCACCTCGCACTCGTATTCCTGTCTCCAAGGTTCCAGTCCGCTCCTCAGGCAACAAAAACGCAAAGGTGacacaaaacaggaagtagaacTCATCAAAATTTACGTTTCAAGCCAAAATGACTGTATTTTGATACAACTAACAATTCCCACAGTCCACCGAGGACATTGcaccttgaatttttttctgcactGATGTATTGTAACATGCCACATATTACACATAACATAATTAGTGCATATGTAGAAAAGATATGTAAAACGATCACACAACTTCACTACCTAACTTGTGCAAAGAAAGCGATGAATTTAagaatgttttgtaaaaaaCCTTTCATCTGTACGTGTCCCACTGGAGATACTCTTCTTCCTGAACcagcaagaaatgagagcaaaGAGTCTTTGGCTctacttcacaaaaaaaacaaaacaaaaacaaaacaaccctCGTGGAAACACAGCTGCAAACACCGTCTCTCTGGGAATTACAAGAAAATAGCCACTTCAAATACCCCGAAACCAAACTCCTCAATCAGGATCAGGGAACGCAATCTTCGTTTGAgatgctcctttttttttaacaattgaAACAACTTCCTAAATCGTCTTTTTTATACAATGAGTTCTTCCTGACGTCTTTCATACTCTTTTTCTATAAGAAAAGCTTCACTGTGGACGCTAATTATTCTGGGATTTTAAACCTCTTGCAAAAAATGTAGgacatattaaaacaaaaacaaacgaAAAAAAGGGTCCCGAGTGCTGCCATGCTAACGGTGGCTTCCACATCACTTTGATTTTAATTACTACGCTGGAGATCTGAATGTAGCACGCCATCACAAAAACATCCATACGCTCTACATGCtcatgaaggagagagagagagaagacaagcctggggggtcaaaggtcaaccgTCTGTCTTGCCGTCCTCAGGGACACCGTAGTCTCTCGTcgttctggattttttttttcaaaggagCGTTACGGTCCAAACAAACATTAGCACAATAACGTCACCGTCAATActgaatgtttttgtactgttaTTTTTAGAGTCACTACTGAGAATGGTTTGTTTTAGTCGTAACAACTTtcctgttattgtttttttctcttctttttcttattctgtttcactaatttatgaataaaacacGCTGTGAGTACGATGA

Function


symbol description
amer2 Predicted to enable beta-catenin binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in ectoderm development and negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including adipose tissue; blood; central nervous system; liver; and pleuroperitoneal region. Orthologous to human AMER2 (APC membrane recruitment protein 2).

NR:

description
PREDICTED: APC membrane recruitment protein 2

GO:

id name namespace
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0007398 ectoderm development biological_process
GO:0005886 plasma membrane cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026937824.2 True 3204 mRNA 0.48 2 19600565 19603770

Neighbor


gene id symbol gene type direction distance location
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding upstream 7113 19579310 ~ 19593452 (+)
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding upstream 94029 19498302 ~ 19506536 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding upstream 163805 19429768 ~ 19436760 (+)
ndufb4 ndufb4 coding upstream 204675 19391973 ~ 19395890 (+)
LOC117595802 NA coding upstream 263915 19335026 ~ 19336650 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding downstream 136287 19740057 ~ 19750055 (+)
LOC113541169 klhl34 coding downstream 280277 19884047 ~ 19887557 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 446966 20050736 ~ 20112391 (+)
map3k15 map3k15,LOC107685453 coding downstream 512244 20116014 ~ 20152049 (+)
LOC113541177 NA coding downstream 560997 20164767 ~ 20167147 (+)
G334806 NA non-coding upstream 11505 19561102 ~ 19589060 (+)
LOC117595782 NA non-coding upstream 78305 19521365 ~ 19522260 (+)
G334733 NA non-coding upstream 248813 19345889 ~ 19351752 (+)
G334575 NA non-coding upstream 667314 18933049 ~ 18933251 (+)
G334573 NA non-coding upstream 667855 18932502 ~ 18932710 (+)
G334888 NA non-coding downstream 100915 19704685 ~ 19707006 (+)
G335214 NA non-coding downstream 162700 19766470 ~ 19766826 (+)
G335215 NA non-coding downstream 163693 19767463 ~ 19768343 (+)
G335243 NA non-coding downstream 220933 19824703 ~ 19824911 (+)
G335345 NA non-coding downstream 361774 19965544 ~ 20029491 (+)
G334838 NA other upstream 23492 19576111 ~ 19577073 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other upstream 172629 19317857 ~ 19427936 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 853088 18712048 ~ 18747477 (+)
G334373 NA other upstream 882612 18693149 ~ 18717953 (+)
mcmdc2 mcmdc2 other upstream 1114556 18467878 ~ 18486009 (+)
cip2a kiaa1524 other downstream 33098 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 74711 19678481 ~ 19683870 (+)
G335231 NA other downstream 184813 19788583 ~ 19789058 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 266611 19870381 ~ 19882836 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other downstream 381562 19985332 ~ 19988036 (+)

Expression



Co-expression Network