gdap1 (gdap1,LOC107693809,LOC107589927)


Basic Information

Item Value
gene id gdap1
gene name gdap1,LOC107693809,LOC107589927
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14475937 ~ 14482845 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937825.2
TACCTGTTAATAAAAACTGAATATTGTAACAGCGTCTCCGCTGCTTGTGTACTTTTGTTGTAAGACTCCGTTAGAGGTTCTTTCCCTTGTATTGACATTTAAAATGGCGGCGCAGGACGAGAAGGAGTCTCTCCTCCAGGAAGAGACAGGTGCAGAGATGCTGAAAGGCAGCGAGGGAAAAATAGAGAGCACCAAAAAGAAAGAGTCGGAACTGGTTCTGTATCACTGGACCCAGTCATTTAGTTCACAGAAGGTGAGGCTGGCCATAGCTGAGAAGGGTTTGCAGTGTAAGGAGTATGATGTGAGCTTGCCTCTGAGTGAACACAATGAGCCATGGTTCATGCGTCTAAACCCAGCCGGCGAGGTTCCTGTTCTGGTGCATGATGATCGTGTCATCTGTGACCCAATTCAGATCATGGATTACTTAGAGGAAACTTTCAGTGATGAGAAAACGCCAAAGCTGATTCCAGAGACAGGGAGTACATATTATCACAGAGTGCAGCATTATCGTGAGCTGCTGGACTCACTGCCCATGGATGCTTACACACATGGCTGCATTCTCCATCCTGAGCTCACTGTGGACTCTCATATCCCGGCCTACGCCAACACACGCATCCGCGCGCAAATCGGGAACACGGAATCTGAGCTGAAGAAACTGGCAGAAGAAAACCCAGAGCTTAAAGATGCTTATATCTCAAAACAGAGGCGCCTAAAAACAAAGCTGTTTGATCACGACAATGTGAAATATCTGAAGAAGATTCTGGATGAGCTGGAGAAAGTTATGGATCAGGTGGAGACCGAGCtgcagaggagagcagaggagacACCAGATGAAGGAACTCAGCAGTCGTGGCTGTGCGGCGAGTTTTTCAGCATGGCCGATGTTTCTCTCGCCGTCACGCTCCATCGGCTCAAGTTCCTCGGCCTCTCGCGTCGTTACTGGGGCAACGGCACGCGGCTCAACCTGGAGTCATACTACGAGCGCGTCCTGGAGCGCCCTACATTCCGCAGGGTCCTCGGACACGTCAACAACATCCTCATATCAGCCGTGTTACCAACTGCTTTCAGAGTGGCCAGGAAAAGAGCACCCACCTTCATAGGCACCACAGTGTTAATTGGATTATTAGGAGGTGCAActtattttgcttttctttattttaaaaagcgcCTGCTTGTGTCCTGAAGTAGCCATAGTCATTTTCATGgcctcatctttttttttttattatttttttttttttacatttagtaaAGCCTatgcatatatactgtaatttctGGACTAGAGGAGATGGGTTGAGGGATTGTACAGCAAAATGATGTGTATGTGACATTATTCTGATTGTAATATTCATTTGTTAATCATAAATATTCTCATTGAGATACTCACCATATACTTGAattaattttcacaattttcaaAGATTTTACAAAATGTGACAGAATCTATCAATTTagtgtttttatccatttttctcCCTAACACAatacttttttcagtttctgaTGACGTGCTGGTGAACTGTTAAGGGTTAACcatgctatttaaaaaatggttctCAAAGCTAACacgatgaaaaagaaaaatcattacTTAGAAATGTTTTGTAGCACTTGGGCAAAACCTGACATATTGAGATAATGTAAAAAGTTAGCTACTAAATAGTAAAATGGTATAAAGTATCACCTAGCCCAGGCTCAACTAAACTTGTTCATATAACTTGTCTAATTTAGTATGCTCCATGTTTGCAGAGATCATTGGTTggctaacttagctagctagcgaaATTGGTAGTAACCTTGTGttagcaggaggtttttactttcatacaaGTGAGTGTGAGTCAGATTTGAAGCTCAGATAAAGATCAGTCCTTAGGAACAGCCTGGTGAGGGTCACAGTCTTCTAAATtaagctactagtttgtttatattttgggaaatagaccccactaaattataaatatgataCCAAAGACGGAATTAAAAACAGTCCCACACACGTGTCTCGAGTGAtatagctgaggttgaggaactgtcagagctagAATTcacccattcccatgttagtgagGTTTTTATTATAGCACTGCCACACAAGCATTTTCAGTACTTTGTGACTTATTCATcaaagcaagtgtgtgtgtgtttatgtcaaTGAGATCATTTGCGTCTCAGGATTGTTTTATTGTCCAGAAAATACAGTCATTGTGAAAATATATGCACattaagcactttttaaaatcaaaagttATGTGTAGAATGTGATAAACACCCTCTTTATTCTGTCCTGAATTTTCCTCAGTGACTAATGCGCATTACACTAGTGAGCATGTGCTGGTAATCGGCTGTACCCTTACAATAAATATGATTTGTCATCGtgcacatttcaaaataatatcaTAAAACCAATGTATATGTTTGGTTTCAGATGTTTTATTCAGAAAGTGTGACAGAAACTTAGGCAGTTCTCATGGTTTGAAAATGCAATATCAGCACATTCCTGTTCAGTATCACATACATGGGAGGTTGTGGCATCTCATGACTGGTTTATTTAGTGAAGCTGTGTATTTAATTAGGCTTGCATTCTGTACCAGGAAACAGTGAACATCCTAGTCAGATAAAACACTTGGCTTTTCTTTAACTGTGTTGAATAGAAGTGTTTGAAAACTGTCCTatactataataaaataactcaGTATGGCAATGCA

Function

symbol description
gdap1 Acts upstream of or within neuron projection development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial outer membrane. Is expressed in central nervous system and cranial ganglion. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease; Charcot-Marie-Tooth disease axonal type 2C; Charcot-Marie-Tooth disease axonal type 2K; Charcot-Marie-Tooth disease recessive intermediate A; and Charcot-Marie-Tooth disease type 4A. Orthologous to human GDAP1 (ganglioside induced differentiation associated protein 1).

NR:

description
ganglioside-induced differentiation-associated protein 1

GO: NA

KEGG:

id description
K22077 GDAP1; ganglioside-induced differentiation-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937825.2 True 2711 mRNA 0.41 6 14475937 14482845

Neighbor

gene id symbol gene type direction distance location
pi15a pi15a,LOC108256124,LOC107758808,LOC107589991,LOC107657806,LOC107689437,LOC107706855 coding downstream 46567 14419894 ~ 14429370 (-)
dok6 dok6,LOC107657792,LOC107596042,LOC107741641,LOC107589921,LOC107689434,LOC107727392 coding downstream 102484 14313082 ~ 14373453 (-)
LOC113541290 socs6,LOC107689432,LOC107596044,LOC107727394 coding downstream 252626 14217138 ~ 14223311 (-)
fbxo15 fbxo15 coding downstream 507585 13954557 ~ 13968352 (-)
neto1l neto1 coding downstream 608790 13765859 ~ 13867147 (-)
thtpa thtpa coding upstream 53717 14536562 ~ 14540764 (-)
ngdn ngdn coding upstream 95940 14578785 ~ 14586869 (-)
prdm14 prdm14,LOC107683184 coding upstream 135198 14618043 ~ 14629435 (-)
ncoa2 ncoa2 coding upstream 152841 14635686 ~ 14695608 (-)
tram1 tram1,LOC107657822 coding upstream 219179 14702024 ~ 14710822 (-)
G332056 NA non-coding downstream 9324 14466394 ~ 14466613 (-)
G331569 mtrr non-coding downstream 1062126 13412902 ~ 13413811 (-)
G331568 NA non-coding downstream 1068479 13406386 ~ 13407458 (-)
G331565 NA non-coding downstream 1093502 13380609 ~ 13382435 (-)
G331560 c8g non-coding downstream 1128080 13343614 ~ 13347857 (-)
G332169 NA non-coding upstream 30890 14513735 ~ 14522615 (-)
G332147 NA non-coding upstream 54407 14537252 ~ 14564704 (-)
G332164 NA non-coding upstream 61187 14544032 ~ 14634926 (-)
G332196 NA non-coding upstream 231372 14714217 ~ 14797198 (-)
G332580 NA non-coding upstream 862427 15345272 ~ 15397132 (-)
LOC113541105 NA other downstream 713322 13757658 ~ 13762615 (-)
LOC113541288 NA other downstream 1797999 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 2479237 11944054 ~ 11996700 (-)
G330379 NA other downstream 3392786 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 3545162 10923126 ~ 10930775 (-)
LOC113541102 msc other upstream 450150 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 479992 14962837 ~ 15065810 (-)
sec61g NA other upstream 1132653 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 1798426 16281271 ~ 16312916 (-)
oxsr1b oxsr1,oxsr1b other upstream 2346945 16829790 ~ 16879884 (-)

Expression


Co-expression Network