panx1a (panx1)


Basic Information

Item Value
gene id panx1a
gene name panx1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15620148 ~ 15629965 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937826.2
TTCGGTGTGTGTTTggtagctaacgttagcttaATGCTGCAGGGCTAGTTAAGGGGAGGTGTGTTTggtagctaacgttagcttaATGCTGCAGGGTTAGTTAAGGGGAGGTGTGTggtagctaacgttagcttaATGCTGCAGGGCTAGTTAAGGTGAGGTGTGTTTggtagctaacgttagcttaATGCTGCAGGGCTAGTTAAGGGGAGGTGTGTTTggtagctaacgttagcttaATGCTGCAGGGCTAGTTAAGGTGAGGTGTGTTTggtagctaacgttagcttaATGCTGCAGGGTTAGTTAAGGGGAGGTGTGTggtagctaacgttagcttaATGCTGCAGGGCTAGTTAAGGTGAGGTGTGTTTggtagctaacgttagcttaATGCTGCAGGGCTAGTTAAGGGGAGGTGTGTTTggtagctaacgttagcttaATGCTGCAGGCCTAGTTAAGGGGAGGTGTGTTTggtagctaacgttagcttaATGCTGCAGGGTTAGTTAAGGTGAGGTGTGTTTggtagctaacgttagcttaATGCTGCAGGGCTAGTTAAGGGGAGGTGTGTTTggtagctaacgttagcttaATGCTGCAGGGCTAGttaaggtgaggtgtgtgttttgatgcCGCTCTGTGCAGCAGGTGGCGGTAATGAACCCTGTAGCGTTCCGCCTTTAAAGAAGAAGAGCAACAAGTGGCTCTTGATGGTCGGGACGGTGATGGTTAATTCTTTGGGAACCTTGTTTGGTTTCAGTTTCTAACTGTACTACACAGTGAAGGTTCTCATTCTCAGTGTAAACAAGTTGAACTTTCTTTCTGTTATCGGGGATTAAACATGGCGATAGCGAACGTAGCTACAGAGTATGTGTTCACAGACTTCTTACTGAAAGAGCCGAGCACAGAGGGGAAGTATAAGGGCGCGCGCCTGGACCTGGCTCTGGACAAGCTGGTTCTGTGTATTGCAGTCGGAATGCCGCTGTTGCTCATCTCTCTGGCCTTCGCTCAGGAGGTCTCAGTCGgtactcagatcagctgtttctctcCCATGAACTTCTCCTGGCGGCAGGCCGCGTTTGTGGACGCCTACTGCTGGGCAGATGTACAGAAACAGGACACGGGGGGACTTCCACTCTCAATGCATAAGTTTTTCCCCTACATCCTCTTATTCGTAGCCATGCTGGTGTACCTCCCAGCCTTGTTTTGGCGATTCACGGTGACTCCTGGTCTCTCCTCTGATCTGACCTTCATCATGGACGAGCTGGACCGCTCTTACAACAGCGCTATCAAACTGGCCAAACGTCTCCATGGCAAATCCACACACCCCGACACGCACGGCTCTATGCCAGACCTGACAGACAAGTGTTTTAAGTACCCGTTGGTGGAACAGTATCTGAAGACCAAACGTCTCTCCTGCGGCCTGCTGCTGCGCTACATGCTGTGCCGAGGCTTCACCTTCTTGGCTCTGGTCCTGGCCTGTGTCTACCTGTGTTACTACATCCGTCTGTCTGTAACAGACGAGTTTCAGTGTAATATCCGCTCAGGTGTGCTGTTTAACGACTCGTCCGTGCCTGGAGCCCTGCAGTGCAAGCTAGTAGCTGTGGGTGTGTTCCAGCTCCTCAGCTGCATCAACCTTGTTGTGTACTTTCTGCTGGCACCCACATGTGTGTACGCCATGTTGGTTCCCCTGAGGATCTCATCTGGTTTCCTGAAACCTTACGAGATGCTGCCCACGCTTGGGATGATGGAGTTTGGACCCAGAGCTTGGGATGATCTGTCGATGTACCTGCTGTTTCTGGAAGAGAACCTGAGTGAACTGAAAAGCTACAAGTGCGTGAAGGTATTAGAGCTCCTGAAGGAGTCTGGAGAGGTGCAGTTTGACACCCTGGTCCTGCTGCAGGCCCTGGGTCAGGTTAAAACAGACATGGTGGATGGGAGACAGCCGAAGAACTCACAGACAGACCTGGAGAAGACTGAGGGAAACTGTGTAGAGATGAAAGAAGCCTCTCCTCTGCTGACTGAGGACAGAGTCGGAATGTCTCGAGATGACACAGCTGTGCGCCAGAGAGTCACATGATGTGCCACAGAGTCACATGATGCTCCAGCGTCACATGATGGCAGTGTGGGTAAATGCAAATGTGATGCCTGATGAGACTTCATGCATTGTGGTCTGGGAGACAGACACTGaatgtggtatgtgtgtgtgtatgtgcttgtgtgtggaGTTCAGAAATGCAATTTGTTCAAAAGATTTGTATGAACTGATATCATGATCGCTGTTATATGCCATGTTTACCTCATTTTTTGTAAACAGTGATAATATGCTAAGGTAtgaatgaggtgtgtgtatatatatggtACGTATGTTTATAGTACATGACGGTACACCAGTTATCTTATCTGGAACTGCGGAACTGACATACGGAATAGCTCCTACACAGGTTACTTGGGGATGTAGACAAGTTTTGAGTTATTTACACACTATagaatttcatttaataatgtttttttttccaaatcatgtTAAACAGAATTTCACAGCATCAGAAATGTAGATTAACTATATAGACCTCAGTATACGATTACCGAACAACCCAATATCACGGTTTTCAGTAACTCAAGTGTCTCACCCTACctccacttaaaaaaaataacttattttttcattatatgtATAAGTCAACTAGTGTGTTTTGACAGAttttagtgtcagtgttttctATAACTTGAATATTCTCTGTGGTACGTTATTATTGTTTGGGAGTTTTCTCTaatgttagcatgctagttttgtttttcagggaAAATCCTTTAAAGCTGTCTGGCTAGCTAATATTTTTAGgatgttcttcattttctaattttgtggttaaaaataaactgaagctTAGGTGCATATTGGTAGTGAGCAAAGTGCTAGGCTGCTGTTGGGAAAGTGTAATGCAAGTGATGGGGATATTTCAGAGATCAAACTCCCATCATGTTGAGAAAATTAATAGTATTCTGTGCAAAAGTTCatgttgtaaaaatgtaatatatgaatTTTCAGCATAGAGTGTACGGTATCTCTGTAAACATCATCATGAGACGCATCCAAGTATTGCAGTCTTATTTTAAAGACAATtataaatgccaaaaaaaatcatgtctttttttcgttttttgtTAAATGGTATATGTGGCAAAAATAATGTTCTTGTGATGTCATTATCCATATtggtatagaataaaataatggtgttcatgctattattatttcagATCATTATGCTCTACTATTAAACATGTAACATGTCAGACTCCTACTATACCCTGATACTCTTTGTTGTCTGTTCAGACAGTCAGTTTTTGGAATATCTGACTAAAATTGATCTGATGAGGACTTAATCTTCTTGGTTTTATTAATTGCGGTTCTGTATAACAGATAGCACAAGCACTTAAAGCTACTATAAACCGGTATGAGgtaattttcttaattttctaTGATCATGAAgcttttgggttttgttttagTCGTTTGCTTTGTAATTCTAGTAATCTGTAGTCATATTTGATGTCTAGTTTCATGTCTGACGGTACTGACAGGATTTCAATAATGAGAACTGGACagtgtttgaatttattttgctTAGTTTATTTAGTTTGCTGCCTATTGTGGACGGTTTTggttttatgttatttttatgaatgcttctgcatgcatgcatgtgcatttgtttaaaaaagatgcAGGATTCATCTTTATTGTTAGTAATAAAATTTGTTGATTTTCA

Function

symbol description
panx1 Enables channel activity; identical protein binding activity; and signaling receptor binding activity. Involved in calcium ion transport and positive regulation of interleukin-1 beta production. Located in bleb; endoplasmic reticulum; and plasma membrane.

NR:

description
PREDICTED: pannexin-1 isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0051049 regulation of transport biological_process
GO:0032587 ruffle membrane cellular_component
GO:0005921 gap junction cellular_component
GO:0022832 voltage-gated channel activity molecular_function
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG:

id description
K03443 PANX1; pannexin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937826.2 True 3785 mRNA 0.43 6 15620148 15629965

Neighbor

gene id symbol gene type direction distance location
tpk1 tpk1 coding upstream 5257 15587302 ~ 15614891 (+)
si:ch73-173p19.1 LOC108256550 coding upstream 222621 15382986 ~ 15397527 (+)
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding upstream 490545 15121226 ~ 15129603 (+)
trpa1b trpa1 coding upstream 509834 15084521 ~ 15110314 (+)
eya1 eya1,LOC107657823 coding upstream 772064 14796644 ~ 14848084 (+)
hephl1a LOC108256642 coding downstream 446926 16076891 ~ 16096771 (+)
LOC113541322 NA coding downstream 570531 16200496 ~ 16219013 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281,LOC107695383 coding downstream 697020 16326985 ~ 16443144 (+)
c22h8orf34 c23h8orf34,cunh8orf34,LOC103047203 coding downstream 814698 16444663 ~ 16529117 (+)
sulf1 sulf1 coding downstream 907688 16537653 ~ 16632052 (+)
G332650 NA non-coding upstream 2914 15592088 ~ 15617234 (+)
LOC113541248 NA non-coding upstream 40350 15570863 ~ 15579798 (+)
LOC113541145 NA non-coding upstream 201225 15413872 ~ 15418923 (+)
G332527 NA non-coding upstream 287716 15328614 ~ 15332432 (+)
G332348 NA non-coding upstream 417843 15201817 ~ 15202305 (+)
G332788 NA non-coding downstream 411419 16041384 ~ 16041587 (+)
G332790 LOC108272979,LOC108266882 non-coding downstream 471785 16101750 ~ 16102212 (+)
G332791 NA non-coding downstream 472306 16102271 ~ 16102597 (+)
G332859 NA non-coding downstream 589588 16219553 ~ 16220945 (+)
G333157 NA non-coding downstream 965816 16595781 ~ 16620089 (+)
G332636 NA other upstream 53485 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 305180 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 354253 15251635 ~ 15265895 (+)
G331476 NA other upstream 2361732 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 2907470 12706939 ~ 12712678 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 1470199 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 1655117 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 1905979 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 2131566 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 2356797 17986762 ~ 17993014 (+)

Expression


Co-expression Network