slc51a (LOC108256565)


Basic Information

Item Value
gene id slc51a
gene name LOC108256565
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19522615 ~ 19531363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937828.2
GCCTCCAGCATTCCCGACTCCCACCCCGGCGCACAAGTGCACCACCCCGTTCCGACGGTTGGAGCTGAATTGGGGTTAGATTTTTATCTCAAACACTCCAACATCACAGCTCCTCTGGGCTTTGTTTGGGCGCGTGCAGGGGCGGGGCTGTGCGGGGAAATTACCGCCCGGATGTCCAACTAAAGTGGATTTTGGACCAAAGTTTTTCTCAGACCAGTGTGGCTTTGTTCAGTAAGAGGCGCTGCTCCAGGCTGATGAGAGACGAGCTGAGGTTTGCTTTTCAGTCTGATCTGAGAGTCGGATAGTGACACAGGAAAGCGGAGCAGGATGAACGGAACCAACCAAACCGACCCGGCATGCACACAGGAGCCGCTTCCGGCTATCCACATCATCTCAAAACTCGACATTTTCGGAGTCATCCTTTACTCCACACTCACCTTCATGGCCTCGGTGTCCATGCTGCTCTTCATCGAGGAGTGTGTTTACATCTACAGGAAAGTTTCCTCCAACAAGAAGAGCGCCATCATCTGGGTGAACGGAGCCGCACCGGTTATCGGTGCGATGTCCTGTTTGGGAATGTGGATCCCAAAAGCCACAATGTTCACGGACATGTTCTCAACCACgtatTTTGCCATCGTGGTGTTTAAGTTTCTGATCCTGATGATCGAGGAGTGCGGAGGTGATGAGTTTTTTCTGAAGCATTCGGCTAACGAGACGTTCAAGATCAGCACCGGCccgtgctgctgctgctgcccctGTCTGCCCCGAGTCCCCATCAcacgcCGCTCTCTGTTCATGCTGAAACTGGGCTCCTTCCAGTTCGCTCTGCTTAAGATGGTGTTTACGATCTTGTCCATCGTCTTGTGGACGAACGGGAACTTCGACGTCACTGATGTGAAGATCAGCAGTCCTGCGCTCTGGATAAACACCAGCGTGGGCGTCCTCACCATCATCGCCCTGTGGCCCGTCGGCATCATGTTCATGCACGTGCGCGACACTTTACGCAGCCTGAAGATCGTTCCGAAATACGCCATGTATCAGCTGGTGCTGGTGTTCAGTCAGCTGCAGACGGCCATCATTAACATTCTGGCCATGAACGGGACGATCGGCTGCTCTCCGCCGTACTCCTCTCAGAGCCGCGGCTACTTGATGAGTCAGCAGCTTCTGATCATGGAGATGTTCATCATCACACTCGTGACTCGGTTGCTGTACCGGCGTCACTATGATCCCATACCTTACAGCGACGGTGAAGAGAAGAAGAATATTGTTCTCGCCAGCAGCGACAAAACCattgtgtgaaaaataaagagtaaaatgctttttttggcACGACGTCGCAGTCACACCACAGACCTATaagtgtatatttttgtatttataaacaaATGGCTCTTTTCTGACAAATAAggtacagtattttttttatcaacagCATGCATGTGATCCAGAATTTTTGTAGGTCTGTCCAAGTCTTTGTGCAGAAAAAGAACAATGTTTTacatattcttcttcttcttctttttcacttgTAGCCCTTTTTCACTAGAAAAGCAGAATAAATCCATGAGGAATGTGTTCTCA

Function

NR:

description
PREDICTED: organic solute transporter subunit alpha-like

GO: NA

KEGG:

id description
K14360 OSTALPHA, OSTA, SLC51A1; organic solute transporter subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937828.2 True 1581 mRNA 0.50 8 19522615 19531363

Neighbor

gene id symbol gene type direction distance location
LOC113541094 pola1 coding downstream 25658 19489318 ~ 19496957 (-)
pola1 pola1,LOC107705179,LOC107666635,LOC107721886,LOC107663691 coding downstream 33232 19439763 ~ 19489383 (-)
hgd hgd,LOC107705246,LOC107721894 coding downstream 111400 19395899 ~ 19411215 (-)
ropn1l ropn1l coding downstream 131082 19382488 ~ 19391533 (-)
ankrd33ba LOC108256627 coding downstream 144742 19363399 ~ 19377873 (-)
zdhhc20b LOC108438268,LOC108256609,LOC107705266,LOC107586722,LOC107590215,LOC107663708 coding upstream 9420 19540783 ~ 19554793 (-)
phldb2b LOC108256156,LOC108438454,LOC107586724,LOC107721837 coding upstream 77674 19609037 ~ 19663355 (-)
plcxd2 plcxd2,LOC108256473,LOC103047596,LOC108414136,LOC107671354,LOC107663676,LOC107586725,LOC105905211 coding upstream 140137 19671500 ~ 19676306 (-)
hhla2b.2 NA coding upstream 173178 19704541 ~ 19711461 (-)
LOC113541040 NA coding upstream 180266 19711629 ~ 19716339 (-)
G335105 NA non-coding downstream 94357 19391964 ~ 19428258 (-)
LOC117595800 NA non-coding downstream 106543 19414228 ~ 19416072 (-)
G335103 NA non-coding downstream 117726 19359557 ~ 19404889 (-)
G335099 NA non-coding downstream 161877 19317859 ~ 19360738 (-)
LOC117595792 NA non-coding downstream 447349 19070338 ~ 19075266 (-)
G335149 NA non-coding upstream 19677 19551040 ~ 19551530 (-)
G335150 NA non-coding upstream 29615 19560978 ~ 19564462 (-)
G335230 NA non-coding upstream 241490 19772853 ~ 19773057 (-)
G335232 NA non-coding upstream 257220 19788583 ~ 19789058 (-)
G335404 NA non-coding upstream 348529 19879892 ~ 19902336 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other downstream 1284 19507088 ~ 19521331 (-)
pkia pkia,LOC107666628,LOC107705234 other downstream 506760 19005498 ~ 19015855 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other downstream 1002410 18437514 ~ 18520205 (-)
zmp:0000000991 NA other downstream 1590801 17916084 ~ 17931814 (-)
c22h11orf65 c23h11orf65 other downstream 1606059 17909324 ~ 17916556 (-)
nup58 nup58,LOC107721897,LOC107590217 other upstream 23778 19555141 ~ 19579031 (-)
G335165 amer2 other upstream 69364 19600727 ~ 19603693 (-)
cnksr2a cnksr2,cnksr2a other upstream 357676 19889039 ~ 19967804 (-)
G335523 NA other upstream 648049 20179412 ~ 20182412 (-)
cops9 NA other upstream 711125 20242488 ~ 20246311 (-)

Expression


Co-expression Network