ccr9b (LOC108256084,LOC108442972)


Basic Information

Item Value
gene id ccr9b
gene name LOC108256084,LOC108442972
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10548728 ~ 10552018 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937829.2
TTGTGTTCACAGTGAGATGCTTTATAATGAGGTCACGGTGTGCAGATGTAATACTCCATAGCTGCCTCTTACTGCTTGACAATTCACCCAAATTGAGACTGGCCAGGGTTTACCTTAATAAGCTACTGAATAATGGCTTATGAAAATTTATCAGCATATCCCTTTACTCCAGACTAtGAGAATAATGTTACAACAGACAACGAGGGAGACTATATACCACCAGACAGTGGCATTTGTGAAAAAAGTTGGGTGAGAGAGTTCCGTGGTTCATACGAACCCCCTCTTTACTGGATCATCTTTGCAGTGGGAGCTATAGGCAACTTACTTGTTGTATGGATCTACACTACTGTTCGAAACCGTCTTAAAACCATGACAGATGTCTACTTGCTAAACCTGGCAATATCTGATCTGCTCTTCCTGGGCACACTCCCATTCTGGGCCACAGATGCCTTACAGGGCTGGGTGTTTAGTGTCAGTGTCTGCAAGGGAGTCCGTGCTGTCTACAAGATCAATTTCTTCGCTAGCATGCTGCTGCTTACTTGCATTAGCGTAGACCGCTACATAGCAATTGTCCGTGTAACTCAGGCCCACAACTTTAAGAACAAGAGGATGTTCTACAGCAAGCTGGCCTGCCTGTTTGTGTGGCTCCTCTCCTGTCTTTTGTCTCTCCCTGAGTTTCTTTTTGCTAAGGTGAAGACAAACCAGGAAGAGGAATCCTTCTGCAGTCTGGTTTATCCCTCTGAGGACAAAAACCTTACCAAAGTCTTGGTGTTGTCCCTGCAGATCTCAGTAGGCTTCTGCCTACCTTTATTGGTCATGGTGGCATGCTATTCTGTGATCATCCGCACCCTGATACAGGCTCGCAACTTTGAGAAGCACAAAGCACTAAGGGTCATCTTTGCTGTGGTGACAGCCTTTGTCCTCTCTCAGTTGCCATACAATGGGCATTTGGTTGTAGAAGCAACACAAGCTTATAACATGACCATGACAGAGTGTGATGTTGTAAAGACCTTCGATGTGGCTGGGCAGGTTGTGAAGAGCCTGGCTTACACACATTGTTGCCTAAACCCTATCCTCTATGCTTTCATTGGGGTACGATTTCGGAAGGATCTGCTCCATCTGTGCCAGTGCTTGACCTCAGGGCTTGGTGGCATCAACAAAGTGCAGTCAGTTCCCAAGAGACCTTCTGTCATGTCTGACACAGACACCACACCAGCACTGTCTTTGTAGTCTGTTGTTAACCAGTTGTCTGTTTCCAGTTGCTTCCACTTAAAATCTTATCTATCGCACACCAGTTGAGAATTGTTAATAGCATCTTCTTTTTAGACTCTCTACTCAGATGTCAATGGACTCTAAATAGCAATTTAGAGAACCATTTGGACAGTGACTGCAAGCATATAAGATGACAAATCCTCAAATTCACAAGGTAGTCCTGCAAGAAAGACCTTCTCAAATACAAACCATGACTATGTTCAATGCTTGTTTAATACTAATCAACACACTATTGTTCATGTGTAGTGTCCACTGATATGGAGTTTCTGAAATTAACAAGTGCCTCTTGGCATGATCACTGTAAATTCTGTACTTAAATCAGTGGTAAATTTGCTTTATTCCAAGAAGAATTTAAgcttaatgaaaatataaaaatgtagcccttttttctttctttttttgtaattatgctGCCcagattctttttcttttgttttgaatttttacatttacagttcaCTCCTGTTCAATAAaaaactgtatatttttgtaaatacacATATATAGGGAGagaaaaagtttttctttttttttgatccTTATAATGTTCTGCACTTCTACCTTCAAATAAAGCATATTTCAAGACTGTCTAGAAATTTTCTGCTGAACTTCCAAAGCTATATACTGTTGTCATGTTGTTGAAAATTGCTTTATAGCTTGGTTGATGACAGTCCCTGGACAGGTTGTTGATTATATGCAGAGTGTCTAAAGTGGACTATCCAAATAATGCTACCATCTACTAAGCATATAATAATACAAAGTAATAGCACA

Function

NR:

description
PREDICTED: C-C chemokine receptor type 9-like

GO: NA

KEGG:

id description
K04184 CCR9, CDw199; C-C chemokine receptor type 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937829.2 True 2043 mRNA 0.41 3 10548728 10552018

Neighbor

gene id symbol gene type direction distance location
lztfl1 lztfl1,LOC107701792 coding upstream 71186 10440957 ~ 10477542 (+)
tmx3b tmx3,LOC107693466 coding upstream 122292 10345323 ~ 10426436 (+)
LOC113541200 dnajc13 coding upstream 206827 10182791 ~ 10341901 (+)
sycp2l sycp2l,LOC108261788 coding upstream 986539 9510608 ~ 9562189 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 1097385 9438298 ~ 9451343 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding downstream 258588 10810606 ~ 10828391 (+)
pxdc1b pxdc1,LOC103040287,LOC107728142,LOC107554723 coding downstream 289665 10841683 ~ 10860448 (+)
myrip myrip,LOC107724561 coding downstream 570377 11122395 ~ 11308612 (+)
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding downstream 818245 11370263 ~ 11374505 (+)
LOC113541334 LOC108256505 coding downstream 826283 11378301 ~ 11382806 (+)
G330059 NA non-coding upstream 14941 10533471 ~ 10533787 (+)
G330056 NA non-coding upstream 28121 10519891 ~ 10520607 (+)
G330052 NA non-coding upstream 65060 10483329 ~ 10483668 (+)
G330044 NA non-coding upstream 86998 10413181 ~ 10461730 (+)
G330049 NA non-coding upstream 93824 10452983 ~ 10454904 (+)
G330063 NA non-coding downstream 22871 10574889 ~ 10575096 (+)
G330121 NA non-coding downstream 193217 10745235 ~ 10745444 (+)
G330122 NA non-coding downstream 197735 10749753 ~ 10750039 (+)
G330259 NA non-coding downstream 419177 10971195 ~ 10971618 (+)
G330260 NA non-coding downstream 434690 10986708 ~ 10988052 (+)
G330038 NA other upstream 115864 10431333 ~ 10432864 (+)
cdh19 LOC108256684 other upstream 610260 9856182 ~ 9938468 (+)
G329779 NA other upstream 755995 9791684 ~ 9792733 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other upstream 861237 9621679 ~ 9687491 (+)
bmp6 bmp6 other upstream 1625935 8851404 ~ 8922793 (+)
gli3 gli3,LOC108444237 other downstream 43112 10595130 ~ 10768360 (+)
acad11 acad11,LOC107715568,LOC104947469 other downstream 322191 10874209 ~ 10984209 (+)
G330257 NA other downstream 421246 10973264 ~ 10974915 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other downstream 1165397 11717415 ~ 11748559 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other downstream 1510314 12062332 ~ 12156787 (+)

Expression


Co-expression Network