flj11011l (ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202)


Basic Information

Item Value
gene id flj11011l
gene name ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15121226 ~ 15129603 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937852.2
ggaaaccattagactttctgtgatgGGGCTTCCAGCATGGCGTCCATGCAGAAAAGGCTTCAGAAAGAACTGTTGGCTTTGCAGAACGATCCTCCTCCTGGAATGACTCTGAACGAGAAAAGTGTAGAGAATACTATAACACAGTGGGTTATTGATATGGAGGGAGCCTCTGGCACTCTGTATGAAGGAGAAAAATTCCAGCTGCTTTTCAAATTCAGTAGTCGATATCCGTTTGACTCGCCTCAGgtaaTGTTTACAGGAGAGAACATTCCTGTCCATCCTCATATTTATAGCAACGGCCACATCTGCCTGTCAATTCTAACAGAGGACTGGTCACCAGCACTGTCTGTCCAGTCAGTGTGTCTCAGCATCATCAGCATGCTGTCCAGCTGCAAGgagaagAGACGGCCTCCTGATAACTCCTTTTATGTAAGGACATGTAACAAAAACCCAAAGAAGACTAAGTGGTGGTATCATGatgaTACATGTTGATGCTGAACTTGACAACACGTTTAGAAAGAAGTTCCTGCTGACGTACATTAGCACTTTTTAAACTTTGAACTTTAGCCTCGAACTGAAAATGGAGGACGTGAACTTTTACTCAAGGACCAGCATTACGATAACAACGAAATGGCTTCAATTAAAGCAAAGACGTCAAGAATTAAAGGCGGAATCTCCCAATCAGGATTGACTCCAGAAGGACGCCGGATTAAGCAATGAGTCCTTAATTCCGTTTtttgatttttggtttcttagCTATGTCTCAAATCGCATGCTTCTGTAGCGCACCAGCCCCTTTTAGTGTGAGCATTGTGTACAAAAGGACCCTTGATGACCCTGTTCAGGGTATAGAGTTGAGCTATCTAGGTTATACAGGCCATGTTTAGTCTCTTGGTTTAGATAAGAATGTAAATTCAAATTGCTAGTCAGATTATCAGTTCAGCAGAATTAAAAATTGAGGTATGGAAGGCTAAACAGAACCAGTTTTAACCAAATATTTTCAAAAGAGGTAAGAACATGCTTTTTGCTAGTGTCAGGCTTTAGTGTATTCTGTATCCATGCTAGAAATTATTTTTGATATCATTTTGAAAAACAACAAAGGTTTGGTCGTTGAATTGAGAAGTTAGTACATCCAGTTAATAGTAAAGTGCAtagtatgcaatttgagacaaAGCCCTTGTCTTTTTctactttatttaatatattattaaatgtaacgttcttttctatttttgttgtGCAATAATGAACCTAAATCGTTTGGTTCATCTGGAAACGACTTTAGCATTTAgtgctttgtgtttgtgcatctgTTTTTGTTCGATGTTTATATGCACTGTGAAATTCTCTATGAAGGCACAGAAAAGTTTAAATCGAAACCTCACTCactaatttatttctatttaattaactaggcatgtgccgataattgtttatattacatacggcgatatttaaaatgcatgataTTATTGTGAATACTTCAATAAATCATCAGTAGAagtaa
>XM_034297859.1
GCTGTAGGCTCAAAGTATCAGGGGCTTCCAGCATGGCGTCCATGCAGAAAAGGCTTCAGAAAGAACTGTTGGCTTTGCAGAACGATCCTCCTCCTGGAATGACTCTGAACGAGAAAAGTGTAGAGAATACTATAACACAGTGGGTTATTGATATGGAGGGAGCCTCTGGCACTCTGTATGAAGGAGAAAAATTCCAGCTGCTTTTCAAATTCAGTAGTCGATATCCGTTTGACTCGCCTCAGgtaaTGTTTACAGGAGAGAACATTCCTGTCCATCCTCATATTTATAGCAACGGCCACATCTGCCTGTCAATTCTAACAGAGGACTGGTCACCAGCACTGTCTGTCCAGTCAGTGTGTCTCAGCATCATCAGCATGCTGTCCAGCTGCAAGgagaagAGACGGCCTCCTGATAACTCCTTTTATGTAAGGACATGTAACAAAAACCCAAAGAAGACTAAGTGGTGGTATCATGatgaTACATGTTGATGCTGAACTTGACAACACGTTTAGAAAGAAGTTCCTGCTGACGTACATTAGCACTTTTTAAACTTTGAACTTTAGCCTCGAACTGAAAATGGAGGACGTGAACTTTTACTCAAGGACCAGCATTACGATAACAACGAAATGGCTTCAATTAAAGCAAAGACGTCAAGAATTAAAGGCGGAATCTCCCAATCAGGATTGACTCCAGAAGGACGCCGGATTAAGCAATGAGTCCTTAATTCCGTTTtttgatttttggtttcttagCTATGTCTCAAATCGCATGCTTCTGTAGCGCACCAGCCCCTTTTAGTGTGAGCATTGTGTACAAAAGGACCCTTGATGACCCTGTTCAGGGTATAGAGTTGAGCTATCTAGGTTATACAGGCCATGTTTAGTCTCTTGGTTTAGATAAGAATGTAAATTCAAATTGCTAGTCAGATTATCAGTTCAGCAGAATTAAAAATTGAGGTATGGAAGGCTAAACAGAACCAGTTTTAACCAAATATTTTCAAAAGAGGTAAGAACATGCTTTTTGCTAGTGTCAGGCTTTAGTGTATTCTGTATCCATGCTAGAAATTATTTTTGATATCATTTTGAAAAACAACAAAGGTTTGGTCGTTGAATTGAGAAGTTAGTACATCCAGTTAATAGTAAAGTGCAtagtatgcaatttgagacaaAGCCCTTGTCTTTTTctactttatttaatatattattaaatgtaacgttcttttctatttttgttgtGCAATAATGAACCTAAATCGTTTGGTTCATCTGGAAACGACTTTAGCATTTAgtgctttgtgtttgtgcatctgTTTTTGTTCGATGTTTATATGCACTGTGAAATTCTCTATGAAGGCACAGAAAAGTTTAAATCGAAACCTCACTCactaatttatttctatttaattaactaggcatgtgccgataattgtttatattacatacggcgatatttaaaatgcatgataTTATTGTGAATACTTCAATAAATCATCAGTAGAagtaa
>XM_034297860.1
CCTGTATATAAGCtgtcactatagaaataataatgtattagaatgagcgcattaatattaactcaTCATTCATGTTCCAGCTAGAACTACTTTCCGAGCCCTGTTggtataagaaaataatgcacactttctgaccaatcggattcgAGCATTCAACTGTGCTATGGTATAATAGATTATAACTTATATCTTATAGAAAGTCTTTGGTCATGGTACTGCTAAAtaactatttatgtatttacaaaatgttataatttctataaagAATGTAGACAGAATATAGCCAAGAAGAGAGCTTAAAacaaagaagaaggaaaaggtGGGTGGGACAAACAGTGgcaatcagtgattggtcattgggaacgaGGGCGATCAGTGATTTATCTTTGGGAACATACACTTATGCAAGCTGATCTCAGTCAGGCTTTGCACTTTGATGAAAAGGCTTCAGAAAGAACTGTTGGCTTTGCAGAACGATCCTCCTCCTGGAATGACTCTGAACGAGAAAAGTGTAGAGAATACTATAACACAGTGGGTTATTGATATGGAGGGAGCCTCTGGCACTCTGTATGAAGGAGAAAAATTCCAGCTGCTTTTCAAATTCAGTAGTCGATATCCGTTTGACTCGCCTCAGgtaaTGTTTACAGGAGAGAACATTCCTGTCCATCCTCATATTTATAGCAACGGCCACATCTGCCTGTCAATTCTAACAGAGGACTGGTCACCAGCACTGTCTGTCCAGTCAGTGTGTCTCAGCATCATCAGCATGCTGTCCAGCTGCAAGgagaagAGACGGCCTCCTGATAACTCCTTTTATGTAAGGACATGTAACAAAAACCCAAAGAAGACTAAGTGGTGGTATCATGatgaTACATGTTGATGCTGAACTTGACAACACGTTTAGAAAGAAGTTCCTGCTGACGTACATTAGCACTTTTTAAACTTTGAACTTTAGCCTCGAACTGAAAATGGAGGACGTGAACTTTTACTCAAGGACCAGCATTACGATAACAACGAAATGGCTTCAATTAAAGCAAAGACGTCAAGAATTAAAGGCGGAATCTCCCAATCAGGATTGACTCCAGAAGGACGCCGGATTAAGCAATGAGTCCTTAATTCCGTTTtttgatttttggtttcttagCTATGTCTCAAATCGCATGCTTCTGTAGCGCACCAGCCCCTTTTAGTGTGAGCATTGTGTACAAAAGGACCCTTGATGACCCTGTTCAGGGTATAGAGTTGAGCTATCTAGGTTATACAGGCCATGTTTAGTCTCTTGGTTTAGATAAGAATGTAAATTCAAATTGCTAGTCAGATTATCAGTTCAGCAGAATTAAAAATTGAGGTATGGAAGGCTAAACAGAACCAGTTTTAACCAAATATTTTCAAAAGAGGTAAGAACATGCTTTTTGCTAGTGTCAGGCTTTAGTGTATTCTGTATCCATGCTAGAAATTATTTTTGATATCATTTTGAAAAACAACAAAGGTTTGGTCGTTGAATTGAGAAGTTAGTACATCCAGTTAATAGTAAAGTGCAtagtatgcaatttgagacaaAGCCCTTGTCTTTTTctactttatttaatatattattaaatgtaacgttcttttctatttttgttgtGCAATAATGAACCTAAATCGTTTGGTTCATCTGGAAACGACTTTAGCATTTAgtgctttgtgtttgtgcatctgTTTTTGTTCGATGTTTATATGCACTGTGAAATTCTCTATGAAGGCACAGAAAAGTTTAAATCGAAACCTCACTCactaatttatttctatttaattaactaggcatgtgccgataattgtttatattacatacggcgatatttaaaatgcatgataTTATTGTGAATACTTCAATAAATCATCAGTAGAagtaa

Function

symbol description
ube2w Enables ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Involved in protein K11-linked ubiquitination and protein monoubiquitination. Predicted to be located in nucleoplasm. Predicted to be active in nucleus.

NR:

description
ubiquitin-conjugating enzyme E2 W isoform X1

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0071218 cellular response to misfolded protein biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10688 UBE2W, UBC16; ubiquitin-conjugating enzyme E2 W

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937852.2 False 1507 mRNA 0.38 7 15122477 15129603
XM_034297859.1 False 1503 mRNA 0.38 7 15121226 15129603
XM_034297860.1 True 1895 mRNA 0.37 6 15124734 15129603

Neighbor

gene id symbol gene type direction distance location
trpa1b trpa1 coding upstream 10912 15084521 ~ 15110314 (+)
eya1 eya1,LOC107657823 coding upstream 273142 14796644 ~ 14848084 (+)
xkr9 xkr9 coding upstream 399649 14714795 ~ 14721577 (+)
pabpn1 pabpn1,LOC108256547,LOC107758815,LOC107589928,LOC107596039 coding upstream 543983 14565792 ~ 14577243 (+)
zfhx2 NA coding upstream 556552 14543991 ~ 14564674 (+)
si:ch73-173p19.1 LOC108256550 coding downstream 253383 15382986 ~ 15397527 (+)
tpk1 tpk1 coding downstream 457699 15587302 ~ 15614891 (+)
panx1a panx1 coding downstream 490545 15620148 ~ 15629965 (+)
hephl1a LOC108256642 coding downstream 947288 16076891 ~ 16096771 (+)
LOC113541322 NA coding downstream 1070893 16200496 ~ 16219013 (+)
G332334 NA non-coding upstream 7712 15065975 ~ 15113514 (+)
G332248 NA non-coding upstream 165159 14955860 ~ 14956067 (+)
G332238 NA non-coding upstream 176014 14944991 ~ 14945212 (+)
G332111 NA non-coding upstream 417956 14688163 ~ 14703270 (+)
LOC117595809 NA non-coding upstream 1159042 13958024 ~ 13962184 (+)
G332348 NA non-coding downstream 72214 15201817 ~ 15202305 (+)
G332527 NA non-coding downstream 199011 15328614 ~ 15332432 (+)
LOC113541145 NA non-coding downstream 284269 15413872 ~ 15418923 (+)
LOC113541248 NA non-coding downstream 441260 15570863 ~ 15579798 (+)
G332650 NA non-coding downstream 462485 15592088 ~ 15617234 (+)
G331476 NA other upstream 1862810 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 2408548 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 2964439 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 3372667 11717415 ~ 11748559 (+)
G330257 NA other upstream 4146311 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 4750 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 122032 15251635 ~ 15265895 (+)
G332636 NA other downstream 436572 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 1970561 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 2155479 17285082 ~ 17302004 (+)

Expression


Co-expression Network