fam162a


Basic Information

Item Value
gene id fam162a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17310721 ~ 17315700 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937860.2
GACAGGCTAGTCACGCTACGCACTCTACCAACACATCAAATGAGCTAGTCTTGATTCCAGTGACAGGAGTGAGAACTTggccttttgtttgtttttaatagttTCAGAAACAAGGGGTCTTTTTTCTTATAGTCGTTCTGCATCGATATTTAACTTGAAGACATGATGTTCAGTGCAATCAGCAGATCTCGTGCCGCTTTTGGTGCTTTTGTAGGTCAGTTGCAGAGATCTGCTCCAAATTCAGCAAGCTGGAGGAAGCTGTGCACTAAACCACATGAAGAGGCCCATGTGGCAACACAAGCACAAAGAGCAGGGTTCAAAATGCCCGGCTACCGCCCATCCGAGATGGACAAGAAGATTCTCGTGTGGTCCGGACGCTTCAAATCCAAGGAGCAGATCCCAGAGTTTGTGTCATTTGAGACGATTGATGCAGCCAGGAACCGACTGCGTGTTAAGGCCTGCTATGTCATGATTGCCATGACTATTGGAGGCTGCATGTTGATGATCATGCTGGGAAAACAGGCTGCAAGTCGCCATGACAACCTGACCAGCAGGAACATGGAGAGAAAGGCTCGGTTGAGAGAAGAGGCGCAGAAAGATCTAGAGATGGCAGCATCTCTGACTAACAGTAAAACGGAGTGAGGAGTAGTAGACGGTAGTGCAGTCACGTTCCTGCACTCCTGCACATAAATTAATGCACTGTTTAACAAGTGATCTGAtaaaagatttttgttttatatagttatttgggttaaaaaaaaatctatagaTTAAATGAGAATCACTCTA

Function

NR:

description
protein FAM162B-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937860.2 True 789 mRNA 0.45 5 17310721 17315700

Neighbor

gene id symbol gene type direction distance location
LOC113541297 LOC108256406 coding upstream 11331 17296573 ~ 17299390 (+)
LOC117595788 NA coding upstream 19826 17287140 ~ 17290895 (+)
LOC113541296 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 coding upstream 23985 17285104 ~ 17286736 (+)
sec22c sec22c coding upstream 139123 17163000 ~ 17171598 (+)
klhl40b klhl40,LOC108256616,LOC107701660,LOC107754945,LOC107585012,LOC107591253,LOC107733151 coding upstream 194945 17111768 ~ 17115776 (+)
si:ch211-161h7.8 LOC108256135 coding downstream 14134 17329834 ~ 17333509 (+)
drd3 drd3 coding downstream 20492 17336192 ~ 17353309 (+)
ccdc191 ccdc191 coding downstream 62601 17378301 ~ 17390639 (+)
urad urad coding downstream 116346 17432046 ~ 17434825 (+)
lnx2a lnx2,lnx2a,LOC107716412,LOC107584972,LOC107701681,LOC107591221 coding downstream 135023 17450723 ~ 17466452 (+)
G333360 NA non-coding upstream 124046 17186129 ~ 17186675 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 412866 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 420560 16888906 ~ 16890161 (+)
G333232 NA non-coding upstream 480742 16732916 ~ 16829979 (+)
G333148 NA non-coding upstream 676938 16605148 ~ 16633783 (+)
G333548 NA non-coding downstream 47171 17362871 ~ 17363075 (+)
G333582 NA non-coding downstream 130485 17446185 ~ 17447043 (+)
G333787 NA non-coding downstream 351936 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 354716 17670416 ~ 17670625 (+)
G333779 usf3 non-coding downstream 392022 17707722 ~ 17712380 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 8717 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 200694 17100164 ~ 17110027 (+)
G332636 NA other upstream 1744058 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 1995753 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 2044826 15251635 ~ 15265895 (+)
rnf6 rnf6,LOC106590444 other downstream 220244 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 445831 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 671062 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 999654 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 1152178 18467878 ~ 18486009 (+)

Expression


Co-expression Network