LOC113541072


Basic Information

Item Value
gene id LOC113541072
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14529664 ~ 14535320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937861.2
acattcattctaAACTTCATTtaagaatattaataaaaacataattcgGAGGCAGTTTATTTGAATGGACAAAGTGTGAATTTCGTTAAGAAACGGGGTTGCTCATATTCTCAGTGCGTTTAGCATTGAACACGTGACAGGAAAGCGTTATTACGTCAAAAGACcataagagccaatcatgttcTGATATGCAAATACAGGCCATTACAGGAGAGTATAGAAAACCTGTTCATGATAACAAGGTAGAAAGCTGAAGTTAAGAAAATGACGGACTGCATGTGTCGGGGGTGTTATGCAGGCTCTGGAGCCTCACTGCATTATATTCCAAAGGATCCAGAGATACGACAGAAGTGGATtgatttcatttacaaaaaCCGCACGGCGcctaaatttaaaaatctggaTCGCATAAGGATCTGCAGCTCTCATTTCACTGAGGAATGTTTCACTAATTACCGGCAGAAAATGATGGGCTTCGGGAAAAGGCTCATTCTTAAACCTAATGCTGTCCCGACCATAGCTGTGCAGCTGGAGTTCACAGCAGCAGCGAGCAGGACTCGACAGGAAAAACTGGAAGAAACCACAGCTGAAACACGCCTGTGCCCCTTGTGTCAAAGACGTCAAAAGGACAGTGATGCTCTTTCTTTGCACCTGACTAAAAAACACAGCGTGCATCCAGCATGTCTCGATAACCTACTCATCACTGCACCTTACGCAAACCGTTCCAGTGGAGGAGTCAGAGAATCCAGTGCACAAAATATCGATGGCACATCACAGCAGAAGTCCTGCGAAAACACCAAATCCCCTTTAATGGCAGTTCAACAAGATGGTTCTTCCCAGGAAAATGATGCATGTGCTGAATCAGTAGTAGGGAACAGAGGAAGCATCTATGGTGACACAGAAGCCTCAGTCAAAGATGATAAATTCAATGATAAAAGCAATGCTGCTGCTGATAGCAAAGTTAACCACACTTTCAAGTGTCACACATGTCTGGAATTCTTTACTAATAAGTCAGCATTGAATGCACATTATAATTCAGCCACTCATATCCAAAAAATGAGAACAGGAGCAGGGAATGATGGTGATTCCTCAATCCCTATTCTTGCTTACCCTTATGTCTCTACCAAACCATACCAGTGTGATGTGTGCCACGTCTCTTACTTTTATGCCTTCGGCTTGGAGAGCCATCTAAAGTCTGTACTGCACCAGAGTCGTACCAGGAAGGCTGGAAATACTGCAActaaatccaaaacaaatacagaaactGGAATTGTTGTGGCAAACTTGGCAGGCACCACAGTGGCTAATGCCACACAGTTAGCTGGTGCTAAGACCTATAATTATGTGACACAAGCAGAGACGGTTCAGCTTCAGCCTGCTTCCTCATTGCTTCCCACTCCAGTGGTGTCAGCTCAGGCAGTGCCTACAGTTCTTCCTCTCCTAACATTAGCTCCAAACTCTGTTCCACACGCCATTGTCCCCTCTGTCTTTCCTCCACCAGGGACTTCAACTACTCAGCTAATACCCCAACCTCAAATGCTAATGCCTCTTATCATGAATGGGCTTCAAACCCAAAGTGCAAGCCCAGATGGCCCTCAACAAATTTTGCAGCAAGCTGTGCCAGTCCTTGATCTCTGCTCAGCACAACAGACTCAAGGACTTGGCTCAAGTGATACCCAAAGTCAGTCGGCAGCTACTAGAGTCTCCAGTGCATCTCAGAAAGCTTTAGAAATGAATACAACGGTTGATGGGGTAggagtgaaagtgaaaatggaAATCAAAGAGGAGCCTTGTGATCAAGCGGTATCACAGATGACACCCTGTACAGCAGATGCTATTAGTCAGGTGGGTTTAAAACAAGAGTATAGCAGCATGTGGGATGGAATTGAGGATAGCATAGTGTGTGGTGACAAGCAGCAGAGCAAAGCCAAAGGGGtgagtgtggggaaaaaaagacaacgTTCTGATGCGAGTTCACGAAATGTTACTAAATCCAGTCCTGCAAAATGCAACCCCTCACATGCTAATCTTGTCTTAATGCCTTCAAGTACCAAGGTTTGTTCAAGCTTGTCCTCAGGACCTCCAGCACTAACCGAGTTTCAGTCTCAGGTTCTGTGGGCCTTTTTCGAGTCGCGAAATGAAGCTGATTCTGAAATTCCACCAAGAGAAGACTGTGAAGCCCTTGGCAGGGAAGTGGGACTAACTGAGGATGAGGTACGAAAATGGCTAGTGGACACCCAGGGCACCAAAGACAGGCACCGTGCAGACGTACAGTCTCACTATGAGAGGCAAGGAAGCACTGAAGATGACGAAGATGCTCTAATGATTGATGAAAGTGGGGGAATGGTTCTCCGCTCCACTACGGACTTCCTTTCAGATGAAGAGAGTGTAGATGATGAACAGACCACAGtggataaaaagagaaagaggggcATGGATAAGGAGGATTCAGAGGAGGAATCAGGAGGGGCAGAGTGCCGGTTTTACCTTCACTTAGAACAAGCTGATCCTCCAGGTGACCCTCAAGGTTATTCAATCCCTCATATATTGTTGGAGTCAGTGTTTCTGTCAGAGACTAAGCCAAAGCAGTGGCCTTTATAAATCCACCAATTACTTAGCCTCAGGGTCAAAAGTCATTTCCAACATCGTTCTATATATTAAACGTTGCTGTGGTATCTTATAATTCATTACTCACTTGGTTCTGTTTTGGGAGCTGACTGATGACCACGCACtagtttttcactttttgttaCTTTCTAATCTTACCACCTCTTcagcttttgtttcattatgatt

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937861.2 True 2796 mRNA 0.44 4 14529664 14535320

Neighbor

gene id symbol gene type direction distance location
jph1a LOC108256670 coding upstream 11877 14486970 ~ 14517787 (+)
crispld1a LOC108256732 coding upstream 123902 14386961 ~ 14405762 (+)
cd226 NA coding upstream 220193 14297560 ~ 14309471 (+)
rttn rttn coding upstream 233893 14234044 ~ 14295771 (+)
cbln2b cbln2,cbln2b,LOC107657802,LOC107596058,LOC107741967 coding upstream 549475 13975240 ~ 13980189 (+)
zfhx2 NA coding downstream 8671 14543991 ~ 14564674 (+)
pabpn1 pabpn1,LOC108256547,LOC107758815,LOC107589928,LOC107596039 coding downstream 30472 14565792 ~ 14577243 (+)
xkr9 xkr9 coding downstream 179475 14714795 ~ 14721577 (+)
eya1 eya1,LOC107657823 coding downstream 261324 14796644 ~ 14848084 (+)
trpa1b trpa1 coding downstream 549201 15084521 ~ 15110314 (+)
LOC117595809 NA non-coding upstream 567480 13958024 ~ 13962184 (+)
G331502 NA non-coding upstream 1147028 13380644 ~ 13382636 (+)
G331496 eif2s3,LOC102783563 non-coding upstream 1166962 13361369 ~ 13362702 (+)
G331498 NA non-coding upstream 1168646 13360280 ~ 13361018 (+)
G331468 NA non-coding upstream 1239265 13287447 ~ 13290399 (+)
G332111 NA non-coding downstream 152843 14688163 ~ 14703270 (+)
G332238 NA non-coding downstream 409671 14944991 ~ 14945212 (+)
G332248 NA non-coding downstream 420540 14955860 ~ 14956067 (+)
G332334 NA non-coding downstream 530655 15065975 ~ 15113514 (+)
G332348 NA non-coding downstream 666497 15201817 ~ 15202305 (+)
G331476 NA other upstream 1271248 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 1816986 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 2372877 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 2781105 11717415 ~ 11748559 (+)
G330257 NA other upstream 3554749 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 599033 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 716315 15251635 ~ 15265895 (+)
G332636 NA other downstream 1030855 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 2564844 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 2749762 17285082 ~ 17302004 (+)

Expression


Co-expression Network