crispld1a (LOC108256732)


Basic Information

Item Value
gene id crispld1a
gene name LOC108256732
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14386961 ~ 14405762 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937862.2
CAGGCTGGCTGTTGGTGCTGTTGGTTTAAGTCCAGCTAAACTCTGAATGGGTTGGATATAGAGGTGTGTTTTCCATGAGATATTTGACACCAGAAGCCAAATTCAGCATAAATCCAAACCTGGTGCAGAGCTGCATTAGTGAAACAGAGGAGACAGGAGAGAAGTTTATTCACATCTCGGATGTACAGTTTTAAATCTCGTTGCTCTCAGGAAGTTTGTTAATCACTTCAGTCTCACATAGGAGCTGTATGAGCACTTTTAACCTGCTGGAGAAGATCTGAGGATTTCCCACATACACCGAGACGCTGTTCCATCTCctgaaggtcaaaggtcacgtCACCATGAGTAGCACATGGCTAAGAGGACTTGCTCTTGTTTTTTTATCCCAGAGCGCTTTCTCCATGACTCTCTTTAACGCCACAGAGCTGAGCTCTCTCTTGGAAAAATATGCTgatgaaaatgaagcaaaacCAAGAGGGAAGCGGGCAATCAGTGCCATCGATAAACAGGCCATCCTGGACCTGCACAACAAACTCCGAGGTCAAGTTTATCCACCCGCGTCCAATATGGAATACATGGTTTGGGATACTGAATTGGAGAGATCTGCTGAAGAATGGGCTGAGACATGTTTATGGGAACATGGACCAGAAGGCTTGCTTAATTACATCGGCCAGAACCTAGGAGTTCATTGGGGAAGGTATCGCCCTCCTACATCTCATGTTCAAGCCTGGTACGATGAAGTCAAAGATTATTCCTTCCCATATCCTCAAGAGTGTAATCCTTATTGTCCATTCAGATGTACAGGGCCCGTGTGTACTCACTACACACAGCTTGTTTGGGCAACCAGCAGTCGAATTGGTTGTGCCATTAACGTCTGCTATGATATGAACGTCTGGGGACAAATCTGGACGAAGGCTGTTTATTTGGTCTGCAATTACTCACCAAAAGGGAACTGGTGGGGAAGTGCTCCATATAAACATGGTACACCGTGCTCAGCCTGTCCACCCAGCTATGGAGGAGGATGTAAAGACAATCTCTGCTATAAAGATGACAATCAATACTATTATGAGGAGACAGAGGAAGACAACATCATCGAACCTGAAGCACCGATCACTACAAGACGCcccgacacacactcacatacacacagcatcaCTGTTGCGAGCACCGAACAGATGTCACAACTTGTAACATGCGAGACAAAACTTCGAGACCAGTGTAAAGGCACGACATGTAACAGGTATGAATGTCCAGCTGGATGTTTGGACAGCCCTGCAAAAGTAATTGGAACTGTGTATTACGAAATGCATTCGAGCATCTGCAGAGCCGGTCTTCATTATGGAGTGATCGATAACAATGGAGGCTGGATGGATGTCACTAGAATGGGCAGGCAGGAGTTTTTCATCAAATCATACAAAAATGGAGTTCAGTCTCTTGGGAAATATCAGAGTGCCAATGCCTTCACTGTGTCCAAAGTGTCCATACATGTTATTACATGTGAGACGACAGTGTCTGCATTGTGCCCATATGAAAGCCCTGTTAAACACTGTCCCAGAATCTACTGTCCGCAAAACTGTCTGCAAGAACACCCTCAGGTCTCCAGAGTCATCGGGACCAAAATCTATTCAGATAAATCCAGTATCTGCAGATCAGCAGTTCACGCTGGCGTGATAAAGAACGAACAGGGTGGCTTCATTGACGTGATGCCGGTGGAAAACAGGCTGTACTATTACGGCTCCTATCAAAACAACGTTTTGTCTGAGAGTATGCAGAATCCTCCAGGAGGAAAAGCTTTCCGAGTGTTTGCAGTCATCTGAGCGCATCCCGAACTCTAATCACTTTTTTCTGGTGGTTGTTTACACAAGTGATTACTGAGCTAAGTACAGTTAGAAGGTGGAGAAGAATAAGAAGATCTGTACATATTTGCCATATTTTGTTCAATTTGTTTTGCGGATGTTGTATGTAATGTTTTGTCTTTGTGATGTTCTCATCCTGAATTTAAGGCAATTAATTAGAGGACAATACAGGGATTATAATATCCAaaggtccaaaagtctgtgTGCATTACTAGAAcagttttctcattttaattaaaaaaaatgttgttagcACAGAACACACCGAGTTttaacatattcatattcagaagTACGCCAATTTCACACAGATGAACTGCAGTGTATTgtgtaataatcataataataatgataataataataataataactgtcaATTAccaaatattgtattaaaatatataagttCTGTGTAATAGCTGATGAATTACTTGGTAGtgcactcagacttttggaccccactttATATAACATCAAGTCACGTAAAGCAGTATTTGGCTTTGTGGAGGTTAGTACTCACTCACACTGAGAAAATGAGGCATGAAAAGGAAATCCATCTATAGTTGAGCAATATGTTTGACATATTGGGCCATATTCACACTTGGTGACTTAGAGATGCAGGTGGCTAAGATGAATTTTTCTTGTGGAAAGCTGTAAGAGAACGAATTTTTCAATAATATCCAGACTTCCATCtttgaaaaaaacacaagcacatgaTTTTAAGCCTAAAATACACTGAGCGAcaaaaaatgctcattttcttAATGTCAATTACAATATGATACAACGTCAAATTAAgatacagtttaaaaatgtatattaatagGATAATATATGTATCATAAGAGggcaaatattaaaataaaaaaaacaattatagcATAAAATAGTCCTCTATTTTTGCACAGTTTCGCTTAATTTAGCAGATGGGTTCATTACTTAGTTGCCATCCTTTAAAATAGCTCTTTAAAACCACAATACTATACCACAGATCCTAACATACTGTACTAATAAACTGTACTAAAAAAAGCAGGCCCAGTCACAAATCTACTTGAGTATTCAAGAGTAAAACTAAATAACTTATCAAAATTAACAATCTAGAcatggatttttaaataattaacattccTGCCCTGTTGGAATGATGCTTAAGGTGGCAttaacaaaaaaggaaaaaaaaaaaaagatagaataTTTACCAAACTATTACTTTTTAGATTTGATGGCAAATGGCCTTTGCTCAATGACTAATCAGTAAAGTTACGTGCAGTGTTTTAGGTTgtgaatttgatttttaaaatgtaatagcaGTTAAGCATGAAATTATTAGAAAAGAAATTATGGCATTTGAGATTGAAGTAATTTAAAGgtcaaaatgaaatgtaaggATTAAAATGTAGGGGTTTTTTTCTCGTGTAAATTTACTTGAGTACAAGTATTCAACAATAATTCTCAATAATACTAGAAATAGCACTTAATTACAGTAACAAAGCACAATTAGTCAAGTATTATCCACCCCTGTTCAGTTGACTCTGTGAAAGGTACTATTTAAACAACTTAAAGAAAGTGAGACACACAGGAGTGAAAAGTGATCACAGCATCATAGTGCGTTAGATATTTGATCTTGCCATGAAATGGCACTATAGTGTTTTGTGCTTGTGCATTGCTCAAAACACCAATTTCAGCATGAAATATTGTAGATATAACAAATAGCAGGAAAAGTGGCACAGGACGTAATAACAAACTTGGCTGGAGTAGATCTCACACAAGATAACTATATGTACATAATGAATAGCAAACAGTTTTTGCCATACTTTACGGAAGACCTGTCCAGGCAGGGCTTACGTGTGTAGTTAATTCTAAGGTCTGAGTACAAATGTGCACAGTTTCTGTATTAACACCTCAGCACGTCATGCCCTTGACTCTCAACTCTGAATATTAATTAAgaatatgtaataatatctgCTTATACTGTTTTAATATGTGGTCCAGTTTGTAGTCATTTTGATCTCCTGCTTTTGTAAAAGTCTAAATTGTAGCTACCTGATGAGTTAATGTTCTCATTTATCCACAAAGGGACGCATACCTTTGAGGATTTTCCGTTAGATTGTACTATGGAGGAAGTCAGCTGTGACATCCCCAATTATGGCACATGTTTAGGACGTaagttctcaaaaaaaaaatgtttttgtatttttgttattgtttatgtatttttatatccataCAGCTgctaagtattttttttctttatacctGAGGTATTGTAAATTTCAATAATGATTATATTCCTGCAGAGCAGGAAACtatatttcaataattttcgtaacaaaaaaaatttgaatattGTACTTTAACTCCATTAAACATTATGTAAATATTCTTTGTTTCAATAGTTGCACACAAGttagaaatataatttaactTGGTAGGTAACAAACAGTACTGTTTGGTATTTAGGCTTGATGCTATTTCTGTACACAATATGTTCTTTTCTGACATTGTTTTCAGAATAAGACTTTATTAATCCCATATA

Function

NR:

description
PREDICTED: cysteine-rich secretory protein LCCL domain-containing 1 isoform X1

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K24243 CRISPLD; cysteine-rich secretory protein LCCL domain-containing

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937862.2 True 4392 mRNA 0.37 15 14386961 14405762

Neighbor

gene id symbol gene type direction distance location
cd226 NA coding upstream 77490 14297560 ~ 14309471 (+)
rttn rttn coding upstream 91190 14234044 ~ 14295771 (+)
cbln2b cbln2,cbln2b,LOC107657802,LOC107596058,LOC107741967 coding upstream 406772 13975240 ~ 13980189 (+)
mtrr mtrr coding upstream 939213 13406164 ~ 13447748 (+)
cmbl cmbl coding upstream 990500 13386074 ~ 13396461 (+)
jph1a LOC108256670 coding downstream 81208 14486970 ~ 14517787 (+)
LOC113541072 NA coding downstream 123902 14529664 ~ 14535320 (+)
zfhx2 NA coding downstream 138229 14543991 ~ 14564674 (+)
pabpn1 pabpn1,LOC108256547,LOC107758815,LOC107589928,LOC107596039 coding downstream 160030 14565792 ~ 14577243 (+)
xkr9 xkr9 coding downstream 309033 14714795 ~ 14721577 (+)
LOC117595809 NA non-coding upstream 424777 13958024 ~ 13962184 (+)
G331502 NA non-coding upstream 1004325 13380644 ~ 13382636 (+)
G331496 eif2s3,LOC102783563 non-coding upstream 1024259 13361369 ~ 13362702 (+)
G331498 NA non-coding upstream 1025943 13360280 ~ 13361018 (+)
G331468 NA non-coding upstream 1096562 13287447 ~ 13290399 (+)
G332111 NA non-coding downstream 282401 14688163 ~ 14703270 (+)
G332238 NA non-coding downstream 539229 14944991 ~ 14945212 (+)
G332248 NA non-coding downstream 550098 14955860 ~ 14956067 (+)
G332334 NA non-coding downstream 660213 15065975 ~ 15113514 (+)
G332348 NA non-coding downstream 796055 15201817 ~ 15202305 (+)
G331476 NA other upstream 1128545 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 1674283 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 2230174 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 2638402 11717415 ~ 11748559 (+)
G330257 NA other upstream 3412046 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 728591 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 845873 15251635 ~ 15265895 (+)
G332636 NA other downstream 1160413 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 2694402 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 2879320 17285082 ~ 17302004 (+)

Expression


Co-expression Network