LOC113541101


Basic Information

Item Value
gene id LOC113541101
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15579275 ~ 15582034 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937893.2
tgccacctgattggcttattagataattgcatgaatgagtagatgtacagatgttcctattaaaaatTAGCCAATGACTGTAAGTGTTAGGGCATTTTATTGAGGCTTAGAACAAGCAGAACAAACACGCCTAGGCAGCAGGGACTTCCACAAATAAATCTCAGAGAAAGACTAGAGCTCCTGCCCTCAGACTGTGCAAGTGCCTTCTTGGCAGCTGTATATAATTATTGTGCTTTGCATGGCCCCTCAGGGCACCCAGTGTTTACAATCATATAATTAGTGGAATTCTCTGTATAACTCTTGACTTTTTATTCAGTTCTTCCTGTTGAAGGACACTATTTACTAATTACTGGGAAATTAATATGGAAGATATTTAGTTCTGACCAACTGAGGGATCCTGGAAGTTTAAGGTCAGGTCATACTTGCAAATTGGCCATGTCAATACCAGCCTACTCACAAGCAAGCTATCTATCTCgttaattatcattaaaattaGGCTAGATACCTCAATTATCATAGAGAGATTTCAAATATTGTCCTAATTTCCATATCTGATGCATGATGCATTTTGTCATACAGTGGGATCaaaaaaaagtctgagagcactacagaaaatgcttctatttttttttctttttttcaatgcCTCTATCTGTTTTCAttagaaaatgtaattatttgcaATATAAgtaaaaagtagaatcttagaaatattcaCATAAATTTCAGAATTGTATCTGATATGTTGATTACATCCTGACGATCCacgttagatcaaatccatcagagtgtcgtctgagcATGTGCTTCCATGAAAGGGATGAGActcaaggaaaatctgacctacAGAGGAATGAACAAATTTGCTTCactttaaatagtgacctagaaatatGACAGAAATCGCTCCTGCAGAAATCGCCCTTCTTTGTTTTCCAGTTAATACCAGATTTTCAATATAGTCTCAGTCTTTTGCACCATACTGTATGTTACAGTCGTCCCATTTTATCCTGGTAGTGTTATATCCATATTGTTTACTAGGTTGTAGTAAATTATTCCATTACCATAGcaaaagctgagaaaaaaagaagaaaaattgtATCCCTGTTTTCCAATGCGCAAGTTGTAGTCTTTAGtcttgtgtgtggtgtttgagaTGTAGATAGCAATTTTATTTCACCTAAAAGCGCAATGTTTTGGGCAATAAGCAAATTGATGACACATTTTTGCCTAGAGAGACTACGCCTCACTTCACCTCATCTCACCTCTTTCAACACGCTATATATCCAGGGTTTCATTTTATACTCTGAATAATGGCGATTTTGTCATGCTTAATGCCCAAACAGACTTGAGAGAcacaattgttttattttagtttttttctctcatttatgGTACATTGGTAAAATGGAGAAGGGACCATTAGCAGAAATAAGGTTGAAGCCTGGAAGCTTGATTGTTAAGATTGTTAAGAGAACCAAATCCCAGCGATGTTTGCATTGCTCGTTTCCTCGGAAGATTATTCAAAGTTGTGCATCTtggtttgaatttatttgtttactgctTCTATGAGTGAATTTATTTAAGAGGTCTGTTCAGAATAGTGCTCAAATGCATCACATCGAGAGATGAAGGCTGTTCATGCTGTCCTCCTCTTTGTGGCTTTAGCAGGAGCAGCCACTTGTCAGTTAgtgagaaaaaacatttttgtgaacAGACCGTTGTCCTGGACTCAAGCTCGGGAATACTGCAAGACATATTATGAAGACCTGTCGACAATTAACACACCATGGGAGTATGAAAAGTTCAAAAATGATGTAGCAGATTATCTTTCAGCGGAATGTTGGGTCGGCCTTAGTAAGAGTTCGTTTAACTTGATCTATACTGAGTGGTCTGATGGAAGCGCTTTAGGATTTCCTGTGTGGAAATTTGGAGAGCCTAATAACCTGCGCTCTTATCACTGTGTGACTATAAACAATATGGAGCTGGCTGATTATGACTGTAAACAACCTCTGAAGTTCTTCTGCTACAAATGGGTGCCTCAGATGGTCTTGGTAGAGATGATGATGAACTGGGAAGAGGCACTGCAGTACTGCAGAACATACTACACTGACCTGGTAAGTGTGACCAGCGACAAAGATCTGAGTGTGGCCATATCGACGAGCATGACCAGTCAGACTCGCAGTGTTTGGACTGGCTTGCACTTCATGGATGGCTCATGGTTCTGGGTGAACCAGAATCATCTGGAGAACCTGACCTTGCTGCCCTCATGCCCCATCAGACCTTTCCACTGTGGAGCCCTAAAAGCTGGAGATGATGGCTGGGAAAACAGAGACTGCAATGAGGAACTGAACTTCCTTTGCAACTACTAAAAAGGGTCACTGCAATCAAAAAAATGGGACCAGATGGAACAACAAAGAAGAAGACATAGGCCTATGTGATGCATGTCTGTCTGTTACATTTTGGCTAGATTAAGTTTTGTGTGGTAGCAGCCAGAACTGAATAAATTGACTGATAATCATTTACTATTTATCCTATTGTTGTCAGTTAGATATCATGTATAACATTTTATGACAATAGTCTCATATAAACATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937893.2 True 2596 mRNA 0.39 2 15579275 15582034

Neighbor

gene id symbol gene type direction distance location
LOC113541144 cntnap2,cntnap2a,LOC108256478,LOC108256479,LOC108256453 coding downstream 19820 15417104 ~ 15559455 (-)
LOC113541141 LOC108256549 coding downstream 164832 15398281 ~ 15414443 (-)
LOC113541204 LOC108256300 coding downstream 199000 15337379 ~ 15380275 (-)
LOC117595668 NA coding downstream 290510 15285508 ~ 15288765 (-)
LOC113541332 NA coding downstream 295120 15276583 ~ 15284155 (-)
LOC113541299 cntnap2,cntnap2a,LOC108256479,LOC108256478,LOC108256453 coding upstream 194987 15777021 ~ 15899598 (-)
LOC113541324 LOC108256119 coding upstream 514947 16096981 ~ 16115913 (-)
tnfrsf11a tnfrsf11a coding upstream 543083 16125117 ~ 16140956 (-)
relch kiaa1468,zgc:66014,LOC107584935,LOC107595141 coding upstream 563022 16145056 ~ 16200451 (-)
arfgef1 arfgef1,LOC107686689,LOC107727224,LOC107595140,LOC107584936 coding upstream 638055 16220089 ~ 16274511 (-)
G332637 NA non-coding downstream 12629 15566187 ~ 15566646 (-)
G332580 NA non-coding downstream 182143 15345272 ~ 15397132 (-)
G332196 NA non-coding downstream 782077 14714217 ~ 14797198 (-)
G332164 NA non-coding downstream 944349 14544032 ~ 14634926 (-)
G332147 NA non-coding downstream 1014571 14537252 ~ 14564704 (-)
G332676 NA non-coding upstream 38472 15620506 ~ 15620717 (-)
G332682 NA non-coding upstream 48189 15630223 ~ 15630444 (-)
LOC113541266 NA non-coding upstream 353794 15935828 ~ 15943189 (-)
LOC113541293 NA non-coding upstream 397082 15979116 ~ 15985108 (-)
G332797 NA non-coding upstream 459278 16041312 ~ 16041512 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 513465 14962837 ~ 15065810 (-)
LOC113541102 msc other downstream 641871 14932995 ~ 14937404 (-)
LOC113541105 NA other downstream 1816660 13757658 ~ 13762615 (-)
LOC113541288 NA other downstream 2901337 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 3582575 11944054 ~ 11996700 (-)
sec61g NA other upstream 33464 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 699237 16281271 ~ 16312916 (-)
oxsr1b oxsr1,oxsr1b other upstream 1247756 16829790 ~ 16879884 (-)
myd88 myd88 other upstream 1303117 16885151 ~ 16889424 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 1534064 17116098 ~ 17139685 (-)

Expression


Co-expression Network