ngdn (ngdn)


Basic Information

Item Value
gene id ngdn
gene name ngdn
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14578785 ~ 14586869 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937902.2
CGAAAATCGCGCATCGTGAAATCCCACTGAAAGAAACGTGTGTGTCCCACTGTGCCTGCTGTAGTTCAAAATGGCGGCTCTCAGTGTACAGAACGATGTGATTGAGGACGATCTGCCTAAAGCCGTGCAACTACTCAACACGCTCACACAGCAGATTGCATTTGTTACAAGCCACGTTCGAGACGTGATAAAGAAAGTCCAGAATAAAACATGTCCAACTTCTAAGGGTTTGTCCTTTCTGGACCTGCGATACCATCTGCTGTTATTTTACCttcaagatgttgcacatttGATAAGCATTAAAGCAGATGGCCAGAGTTTGAAGGACAACGGCGCCATCCACAGGCTGGTCACCATAAGAACGGTTCTGGAGAAGATGCGTCCTCTCGATCAGAAGCTGAAGTATCAGATTGATAAATTAGTGCGCACTGCTGTGACTGGCAGTCTGGCTGAGAACGATCCTTTACATTTCCGTCCGAATCCTGAGAATCTTGTCAGCAAGcttGATCAGTCCGAGGAATcagatgatggtggtgatgatgatactggaaataaaaaagattcTGGGAAGAAGGCGACCCCCAAAGCCAAGAAATACATCCCACCAAAGATCGCCCCAATGCATTAtgATGGTGATTTGACGGAGGCCGATAGGCAGAAGGAGCTTGTGGATAAACGCAGGAAAGCGGCGTTCCGTAGTTCAGTGATCGGGGAGCTCCGGCAGCAGTACAGCAATGCGCCAGAGGAAATCCGCGAGCGCCAAGATTttcagactgagagagacatcAGAGAGGAACAGCACAGGAAAAACTATGAGGAGTCTATGATGGTGCGTCTAAGTGTCTCACGAGATCAGAAGGCTAAGAAGAGACGCATGATGGGAATGTCCTCACAGCTGAAGAGCATCACACACTTCGGTGACATCACAGCGCTGACCGGCGGAGAGGCACCAGATTTGGATAATCCCAGacccaagaagaagaagaaactgctgaagaagaaaaacaaaaagaagatGTTCAAGAAACGCAAGTAGAGGTTCTCTACGTCTGGATTGAGACAGGATGGTTTTCATTTGCCTAcatcttcaaaataaaaataatcaaccccA

Function

symbol description
ngdn Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human NGDN (neuroguidin).

NR:

description
neuroguidin

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14765 NGDN, LCP5; U3 small nucleolar ribonucleoprotein protein LCP5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937902.2 True 1111 mRNA 0.47 11 14578785 14586869

Neighbor

gene id symbol gene type direction distance location
thtpa thtpa coding downstream 38021 14536562 ~ 14540764 (-)
gdap1 gdap1,LOC107693809,LOC107589927 coding downstream 95940 14475937 ~ 14482845 (-)
pi15a pi15a,LOC108256124,LOC107758808,LOC107589991,LOC107657806,LOC107689437,LOC107706855 coding downstream 149415 14419894 ~ 14429370 (-)
dok6 dok6,LOC107657792,LOC107596042,LOC107741641,LOC107589921,LOC107689434,LOC107727392 coding downstream 205332 14313082 ~ 14373453 (-)
LOC113541290 socs6,LOC107689432,LOC107596044,LOC107727394 coding downstream 355474 14217138 ~ 14223311 (-)
prdm14 prdm14,LOC107683184 coding upstream 31174 14618043 ~ 14629435 (-)
ncoa2 ncoa2 coding upstream 48817 14635686 ~ 14695608 (-)
tram1 tram1,LOC107657822 coding upstream 115155 14702024 ~ 14710822 (-)
terf1 terf1 coding upstream 358790 14945659 ~ 14954679 (-)
dcaf11 dcaf11 coding upstream 524829 15111698 ~ 15120918 (-)
G332147 NA non-coding downstream 14081 14537252 ~ 14564704 (-)
G332169 NA non-coding downstream 56170 14513735 ~ 14522615 (-)
G332056 NA non-coding downstream 112172 14466394 ~ 14466613 (-)
G331569 mtrr non-coding downstream 1164974 13412902 ~ 13413811 (-)
G331568 NA non-coding downstream 1171327 13406386 ~ 13407458 (-)
G332196 NA non-coding upstream 127348 14714217 ~ 14797198 (-)
G332580 NA non-coding upstream 758403 15345272 ~ 15397132 (-)
G332637 NA non-coding upstream 979318 15566187 ~ 15566646 (-)
G332676 NA non-coding upstream 1033637 15620506 ~ 15620717 (-)
G332682 NA non-coding upstream 1043354 15630223 ~ 15630444 (-)
LOC113541105 NA other downstream 816170 13757658 ~ 13762615 (-)
LOC113541288 NA other downstream 1900847 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 2582085 11944054 ~ 11996700 (-)
G330379 NA other downstream 3495634 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 3648010 10923126 ~ 10930775 (-)
LOC113541102 msc other upstream 346126 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 375968 14962837 ~ 15065810 (-)
sec61g NA other upstream 1028629 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 1694402 16281271 ~ 16312916 (-)
oxsr1b oxsr1,oxsr1b other upstream 2242921 16829790 ~ 16879884 (-)

Expression


Co-expression Network