klhl40b (klhl40,LOC108256616,LOC107701660,LOC107754945,LOC107585012,LOC107591253,LOC107733151)


Basic Information

Item Value
gene id klhl40b
gene name klhl40,LOC108256616,LOC107701660,LOC107754945,LOC107585012,LOC107591253,LOC107733151
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17111768 ~ 17115776 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937903.2
TCTAGATAGAGTTTGGGTGAAGTGTTGGGACAGCTGAGGAAGTCTGCTAACCAGGCCCTGCCTCATTTTTCTGGATTGGACACTGACAGAAGCAGAGCTGGCATAAGTACTGCCTGAAAAACTGGAAGAACCTGAATTGAGGTTGTCACAGAATTCAAACAACCATGGCTCTGCCGATAGACCCCATGGAGGAGCCTCGAATATACCAGCAGACGCTGCTGCAGGATGGCCTCTGCGACCTGCTGGAAAATGACACCATGGTGGACTGCGTGCTGAAGATCAAGGACAAGGAGTTCCCCTGCCATCGCCTTGTGCTGGCTGCTTGTAGCTCCTACTTCCgggcattttttaaatcaggtgTGGAAGCAAGCAAACAGCGTGAAATTGTCCTGGAGGATGTTGAACCTGGTGTCATGGGTATGATTCTGAAATACCTCTACACATCAAGCATCAATGTGACTGAGCAGAATGTCCAAGACATCTTCGCTCTCGCCAACATGCTCCAGAtcccttccattttcacagtaTGTGTCTCTTTCCTGCAGAAGCGCTTGAGCTTGAGCAACTGCCTGGCCATCTTTCGCCTGGGATTGATGCTCGACTGCCCTCGGTTGGCTATCTCAGCCCGGAACTTCGCCTGTGAGCGTTTTCAGCTGATCACACGAGATGAGGAGTTCCTACAACTAAGTCCCAGCGAGTTAGGGGCCATCTTGGCCTCGGACTCACTGAATGTGGAAACAGAGCAGGCTGTATTTGAGGCTCTGATTAAATGGGTGGGCTGTGACAAGGACAAACGTCTTGAGGAACTCCCAACACTACTGGACTGTGTGCGCTTCCGACTCGTCCCTGAAGACTATTTTGCAGAGCAGGTGGAGCAACACGAGTGGCTGCGATCTAACCCAGAAATTACCAAGAAATTGCAACTGGTCAAAGATGCTCATGCTGGGAAGCTTCCAGAGGCCAAGAAGACCTTGACAAATAAGAAAAGCAAGGAGAAGAAGACAGAGGAAGATggtgaagaggaagaagaagatcagGAAGAGTTACTTCCTGGAATCCTGAATGATAATTTAAGGTTTGGCATGTTCCTTAGAGACTTAATATTTATGATAAGTGACACAAGTTCAGTGGCTTACGACCCTACAGGAAACGACTGCTATGTGGCGTCAATATCCAGCCAGGTTCCAAAAAATCACTGCAGCATTGTAACCAAAGAGAACCAGATCTTTGTGGCTGGTGGACTTTTCTTCAATGAACAGAATGAAGAGGAACAGGTTAACTCATACTTTTTACAGTTTGACCCCGCAAGTTCAGATTGGCTAGGAATGCCCCCCATGCCCTCACCACGCTTCCTGTTTGCCATGGGTGAAGCAGAGAACGCCATCTTTGTAATCGGTGGGAAGGAGTTAAAGGAGGGAGAACAAACTTTGGATTCAGTCCTAGTTTATGACAGACAATCTTTCAAATGGAAAGAGTCAGTTCCACTTCCCTATGCGGTATATGGCCATGGAACCGTGTCTCATGATGGAACTGTGTATGTCATAGGAGGAAAAGAAGACAGCAAACAGTGCTTGAACAGAGTTTGTGCTTATGACACAAAGAAAAGTGAATGGAAGGATCTTGCACCACTGAAGACTGCACGATCACTGTTTGGCGTCACTGTTTATAAGGGCAAGATCTATGTGGCTGGAGGTGTCACAGAGACCGGCCTCACTGGCACCATGGAGGTTTACGACATTAAATCAAACAAGTGGTCTGAGTTTGTTGACTTTCCTCAGGAGCGCAGCTCCCTCAGCCTGATCACAGTGGGTAATGCCATCTACGCTGTGGGTGGCTTCGCAATGTTTCCAAGTGAAAACAGTGAAGAGCTCACACCAAGAGAGATGAATGACATTTGGAGGTATGATGAAAGTGAGAGGAAGTGGAGTGGTATCCTGAGAGAGATTCGCTATGCTTCAGGTGCCACCGTGTTGGGTGTTCGTCTCAACACACTGAGACTCACTAAAATGTGAAACATGAAACCAATGGAACAACTGTTTGTACTCACTTGAGACccagtcttttttcttttttttttcaatttttctaATAAAGTTCGGTTTTATCAGACAGAAAGTGTGACATATGAGAACAAGAGCACTAAAAAACTGGAACTGTGCTTTTTTCCATTGACCAGTTTTAgatgtatgttttttaaaatcaccaAGTTTGGCACCTGCAAGAACTTATGGTACCTGGAGACACGGCTTTCAGCACTATTCATTGCTGATTGGTTGTGCTTACTATATCAGACCAAAAACTGAATAAAGGAATGAAAACCCAGAAAAATCAGGTGTATGTGCTGTCAGTAGCAACATTGTGCTGTTACATTTCATCTACTTGCATGTTTCATTTCTCAAAAAATATACTCatactataaaaaaatataaaatatatatactcaTACAGCACTAACAATATCATTATAGCATAACTCCCATCCATAGAAACAGCTGTCTGAACATATTCGGTGTGACTTTAGAGGGCTTAGTAAGTTAACAATGTCCCTATTATGCTATTACCACTTTGTCAGATTTTCTCAGTGGAGGGTTAGatcaaaattattttcatttcctcatgGTGCAGACTTTGGTTATAActtagaaaatttaaaaacactatCAATTAATATCAGTAATTTTGTTTCAGCTTGGTTCAGTTCTTGTTTTTTACTGTGCAggaaaaagtcattaaaatcTCTGGCTTAATTTCAGATAAAATTATAGTTTTACTGTTATTACCATTACTGTTAACAATGTATGTCATCTACAGTAATTAGAATTAAATTGCAGAATATTCTCCATAAACTTGTTATTTCTACCTATTATGGTGTTATGATTAGCACTAGGGCTGCATAATAAGACAGTATAATATCAACATTGTGATAAAGTATGTCAAAATACACTTTTATAAGATATTGTGGATATCATCAATATTAATAATTggaaataattg

Function

symbol description
klhl40 Predicted to be involved in myotube differentiation and regulation of cellular protein metabolic process. Predicted to be located in cytoplasm. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in A band and I band. Implicated in nemaline myopathy 8.

NR:

description
LOW QUALITY PROTEIN: kelch-like protein 40b

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0036268 swimming biological_process
GO:0030017 sarcomere cellular_component

KEGG:

id description
K10473 KBTBD5_10; kelch repeat and BTB domain-containing protein 5/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937903.2 True 2994 mRNA 0.42 6 17111768 17115776

Neighbor

gene id symbol gene type direction distance location
gars1 gars,LOC107591252,LOC107754935,LOC103377215,LOC107733158,LOC102797257 coding upstream 13423 17086210 ~ 17098345 (+)
spag6 spag6,LOC107686700,LOC107741767,LOC107727238 coding upstream 26292 17074213 ~ 17085476 (+)
plcd1a plcd1 coding upstream 96974 16985047 ~ 17014794 (+)
acaa1 acaa1,LOC107701655,LOC107758307,LOC107741015,LOC107591283,LOC107670419 coding upstream 150922 16953684 ~ 16960846 (+)
LOC113541068 LOC108256337 coding upstream 293329 16805646 ~ 16818439 (+)
sec22c sec22c coding downstream 47224 17163000 ~ 17171598 (+)
LOC113541296 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 coding downstream 169328 17285104 ~ 17286736 (+)
LOC117595788 NA coding downstream 171364 17287140 ~ 17290895 (+)
LOC113541297 LOC108256406 coding downstream 180797 17296573 ~ 17299390 (+)
fam162a NA coding downstream 194945 17310721 ~ 17315700 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 213913 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 221607 16888906 ~ 16890161 (+)
G333232 NA non-coding upstream 281789 16732916 ~ 16829979 (+)
G333148 NA non-coding upstream 477985 16605148 ~ 16633783 (+)
G333157 NA non-coding upstream 491679 16595781 ~ 16620089 (+)
G333360 NA non-coding downstream 70353 17186129 ~ 17186675 (+)
G333548 NA non-coding downstream 247095 17362871 ~ 17363075 (+)
G333582 NA non-coding downstream 330409 17446185 ~ 17447043 (+)
G333787 NA non-coding downstream 551860 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 554640 17670416 ~ 17670625 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 1741 17100164 ~ 17110027 (+)
G332636 NA other upstream 1545105 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 1796800 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 1845873 15251635 ~ 15265895 (+)
G331476 NA other upstream 3853352 13257894 ~ 13258416 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 169306 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 420168 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 645755 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 870986 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 1199578 18315354 ~ 18323295 (+)

Expression


Co-expression Network