c22h8orf34 (c23h8orf34,cunh8orf34,LOC103047203)


Basic Information

Item Value
gene id c22h8orf34
gene name c23h8orf34,cunh8orf34,LOC103047203
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16444663 ~ 16529117 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937906.2
AGAGGAAAGAAGCGGTGTGCACCGGGAGGTCCTGTCCGGTCTCATGCAAAGCCAGAGCTCACACTTTACTCTGTGTTTCTGCACAAAAACAGGACCTGCAGCTTCAGCACAAATTCTTTACCGCAGCCTttagtactattattattattattgttattttttccttttaaccGAAAGCACATTTCATTTCTCTGCTGAGGATGCGCGCGCGCTGGTCCAGCAGCacacctcctcttcctcctcctcgcCTTGTGTTAATGTAGTGTAAATGTGGTGTGATGTAAGGAGTGTTCTCCATGGCGTCTCAGCAACAGTCCCGGATCCAGTCTTACCTGGAGAGGAATAAAATCGGACCCCTGTTTGAGGAAATGATGACCAAACTGATAACTGAGACTCCAGACCATCCGATTCCATTTCTAATCGGACATTTACAGACCAAACAGGAAAGTCCAGGCCGGCTTCACCGAACGCTGTCTGGATCTGCAGCTCTGTGGGCCGAGAGCGGCTGTTCAGAATATAAAAGCAATCGACGGGATTTCAGGAGTTACGACAGAGCCTGGCAGATTCACCCCAAAAAGCCCAAGAAGTCCAAGAGTGACTTAGCAGTGTCCAAcatttctcctccttctcctgagTCTAAATCACTGCCTCGTTCCATAGAGTGTCCCTCATGGGACTGGAGGACCAAACCCGAGAGCCGAGACTTTGACGAGCTCAACCACATcctgagagagagcaagaagcTGGGCAAAGCGTTGGAGAACCTGTCCCGAAGTATTGCCTTATCTGATGAGCTCGATCAGGGCCCGCGGCTTTATAACTCAGTGTTGCGGCCCCGTGTGGTGGGCGAGTGGCTGGGCAGAGACGAGGATGATGCTGACCCGCTGGCTGCTGAGATGCTCCAGCCACCTGTCCCGAGGGCAAAGAACGAGGGATGGAGCAGCCGAGACACCAGTCCTGCAGGGAGTCTGAAGATGGAGGTGAAGACGAAAGGGctgaaacagcagcagcagcaccggAAGAAGCTCCTGGCGGCCATGTTGTCTCAGGACTCGTTTGAGTCCATGGCCAGCTCGGCTCCGTCCGTCACCGAGGACGAGATGGAGGACGAGGACGACGCCATGGAGCTTCTGGAGGACCTGGATGACCTGAGGATGGAGGGGGTCACTGGCCTGGTTTCTTCTGGCAGTAAGTTCAGCCAAGGGCGCAGCTCCTACTGCCCCGAACCGCAGGCCAAAGTCACCCTCAACATCTGCTCAAGGTGTGCCAGGCTTCAGGGGGATAGTCTCGCTCCAGCCGGAGCTGAAGAGGAACCAGCACCGCATGTTCCTGAGCAGGCCGTGCCTGAAGTGACATGTCCATTGCCTGGAGTGACAGAGCCTCCGACTGCCGCCGAGCTGGAACTCCAGAGTACTTCTCAAGTGTCCGCTCCGcgaTACCCTGCATGGGCGCCGGACGTGAAGCCGGTGAGAGGCACGAGCCCAAAGGCACAGAGGCGTGCTCTACAGCTCGAGGAGCTTCTCTTTTCTAAAGAGCTGGAGAACATGGGCAAGCACCTCGCTGAAGTGGAGAAGGACTTGGCCAAGCTGGCTGAACAAGGGAAGCTCAGCAGGAGTCCCATCAGCCCCCACAGCAGCCTGCTCCTGCCTGTGAACCCCCAGAGTGCCAACGCTCTTCCCATGCCAGGCTTCAGCTCCAAGCCCAACTCGCCAAGCAAGACTCCCATGCTGCCGCTCATCATCAGCCGGACTCAATCTCCCAGCAACCCCTGCAGCCGAGCCCAGACTCCCAGCAGGCCCCTGACCCCCAACAGCCTCATGATGCGCTCTCTACCCACTGCTAGCCACGGAAACCCAGATCGTATGTACAGGCGCTCCAGGAGCAGACCGGTTACCCCGACTGGGCAAATAACGCGACCTCTTTTGACCCCGCCAGGTCTCAGCAGCACGGACAGCTTCAGTCTGCGCAGCACACTGTCTGAGgatgAGTTTTACCGGCAGCTGCAAGCCGTCAGACAGCCTTGGCTCATCCCCAGTGACACTGAGAGCGAGTGTATGGAGCGTCCAGAGCAGGACAAGTGTAACCCTGGCGGAATGAGAGATGCCAGTAAACGATCAGTGTTTTCAGgcttATAACACGACAACTGCAGATGGAGACCCAATCATATTTATGCAATCTAAACGGGCATTTTGAACATTGTGAATAAGCCAGAGAGAGacttattttttataattcctatttaaaaaaaaggattgtgTACTTTTTTTCCACAGAGGTTAATATTTCTTAGAACCTGGCACATCTGTATGCTAAAGTACAAATACTTGAAATTAGAGAATGTAGTATGTTGATAAGAATGCTGTCTATCTgctgtgtttgatttgtttgcctttttaGCATGCTTCCCATTACTGAGTTATGGGAGAAAATCTTGACACATGGCCTTGCATTGAAGTTATGTATACGATTTTATGTGccaactgatgaaaaaaaagatatttttgataACCATTTTCAGTAAAGGAAATGGCAGCCTTGTTTAGATGGATGTGTGAATATTAAAGCTAGGTAGAGAAGCACCCTTAAGCCAggtttacactgtatgattttcagcCCAGTTTTATCACTGCAGAGGAAAAGCGCACATCCTAAAAGAATCTGGCTCAGTGTGGCagccagggaaaaaaaaaaaaagttctgtcaGTGTTTGAAATGTTTGAGTAGAAACTTAGAGCGTGAGCGTTGCTTCAAAGCTTGTCTAAAAGTAAGGTGACTTACGCAGGATTACGCAGAGTTGATGAGAGAGCTACAAAGACGTTAGTAGCAATGTCGAAGCATAAACAAAACAagctaatggaaaaaaaacatccttattacctcaagcgcACTtgagaatgtttctgtttttccgCTCAAGCCCAGATCAGTCAGCTTGATGACGTACGCAGAACGtagacattttctttaatctaTCGTTAGAGAAACTTCGTTCGAGAATTTGAGATTTTTCTGGGATCATCTCATACAACGTGACAGAATCGTACAGTGTAAAAGAGGCTATATCCTGTATCACTGCCCTGGAAGACCAACACAGCAAGCACTCTTTTACTTCCTACAACGAATGACAAAAGTAACGTGTAGAACAAGATGagatttatttgttattttgtacCAATGATGCACTACGTATATATATCGCCTGCTACACCTTGTATGATGCAAA

Function

NR:

description
PREDICTED: uncharacterized protein C8orf34 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937906.2 True 3223 mRNA 0.50 15 16444663 16529117

Neighbor

gene id symbol gene type direction distance location
prex2 prex2,LOC107741010,LOC107686687,LOC107758281,LOC107695383 coding upstream 1519 16326985 ~ 16443144 (+)
LOC113541322 NA coding upstream 225650 16200496 ~ 16219013 (+)
hephl1a LOC108256642 coding upstream 347892 16076891 ~ 16096771 (+)
panx1a panx1 coding upstream 814698 15620148 ~ 15629965 (+)
tpk1 tpk1 coding upstream 829772 15587302 ~ 15614891 (+)
sulf1 sulf1 coding downstream 8536 16537653 ~ 16632052 (+)
LOC113541353 slco5a1,LOC108256392,LOC107741005,LOC107686683,LOC107584939,LOC107695420,LOC107758302 coding downstream 109988 16639105 ~ 16684971 (+)
LOC113541068 LOC108256337 coding downstream 276529 16805646 ~ 16818439 (+)
acaa1 acaa1,LOC107701655,LOC107758307,LOC107741015,LOC107591283,LOC107670419 coding downstream 424567 16953684 ~ 16960846 (+)
plcd1a plcd1 coding downstream 455930 16985047 ~ 17014794 (+)
G332859 NA non-coding upstream 223718 16219553 ~ 16220945 (+)
G332791 NA non-coding upstream 342066 16102271 ~ 16102597 (+)
G332790 LOC108272979,LOC108266882 non-coding upstream 342451 16101750 ~ 16102212 (+)
G332788 NA non-coding upstream 403076 16041384 ~ 16041587 (+)
G332650 NA non-coding upstream 827429 15592088 ~ 15617234 (+)
G333157 NA non-coding downstream 66664 16595781 ~ 16620089 (+)
G333148 NA non-coding downstream 76031 16605148 ~ 16633783 (+)
G333232 NA non-coding downstream 203799 16732916 ~ 16829979 (+)
LOC113541357 NA non-coding downstream 359789 16888906 ~ 16890161 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding downstream 363889 16893006 ~ 16897855 (+)
G332636 NA other upstream 878000 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 1129695 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 1178768 15251635 ~ 15265895 (+)
G331476 NA other upstream 3186247 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 3731985 12706939 ~ 12712678 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 571047 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 755965 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 1006827 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 1232414 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 1457645 17986762 ~ 17993014 (+)

Expression


Co-expression Network