LOC113541118 (LOC108256139,LOC108442190)


Basic Information

Item Value
gene id LOC113541118
gene name LOC108256139,LOC108442190
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17815640 ~ 17828279 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937907.2
tctctttATGTTTACATTGCACTTCCTGATGATTGGCTGTTGTCCCTGATTAATTTCATGACTTGATGAACACACTGTTAATCAGCTTGAATTTGCGCACAGTGTCTGTTGGATGCCTGTGTGCCACCAGTTCATAGTGGTGCCTTTGTGCCGCGTTGCATCATGGGAGCCGTGCAGCACCTGTGCACGGGCGGGCGCGGGCAGTGAGCGCGCGCAGCGCTGCACCCGCTCAGCTCGGGTTTCTCCGCGCACCGAAAGCGAGGCATCGCTCCGGACTTTTCCCCGCAGCTGCATTTCTCCGTGCTGCGCGTCGTGCTGTGTCGCCTGCGACCGGGAGCCACACGGGACCAGGAATGAGGACTTTCCCCAAAAACAGAAGCTGCGATGTTTACAGCGTATCCGGTTTAGGACACTGTGGAACCGCAGACTCACCTGTACAGGACATTAAAGTAAAGGAGCCGTTCCAAATTCCGAAAAGTGCCTCTAAAAGTGAGAATCAGGCTGGGTCAGACATCAGGCGGCCAGGGGAGAGGAGAGCCACCTTCAGGGCATGGCGAAAGTGGGCGCTGGGTGCCACCCCCCTCATCCCTCTGTCCACTGCCGTTGCACTGACTCTCCATTTCCTTGCATCGTCTCCGTCTTCCACAGTGTTCTTCCTGGGAGGAAGCGTGGAGTTTTCCAACCTCAGCTTCTCACCGGCGCTGGCCGATCCTTCTTCCACACAGTTCCACCTTCAGTCTCAGGCCCTCAGCCGCTATTTCTCAGAGTTATATCAGTCATCACCCTGGAGGCCATACTACCGCCGCTCAGGGATTGTCGCCTTTAGTGAAGGAGTGAATGGGCTCAATGTTTTCTTCTGGAGTAAGTTCTCCGCTCCATCAGCGGCCATTGCAGAGGAGCTGCAGAGATCTAAACCTGCGTGGTTGCAGCGGCATCTTCCTGGCACCAACAAGGTTCTTCACAGCAGACTGGAGGAGCAGTATTACCTGGCGAAGGATGAAGACACACTAAGGCTCCTGGGTTTGAATTTAGacagtgaagatgatgttgacGATGATGACATGGCAGATAAGATAAAGAATCCCAACAATTTGCAGAGTGGCAAGTGGCAGCTTGGACTTCAGGCCATGTCTTTTGACCTCTACGCCAAATATGGCAACAATCGAACACTGAGTTTGGTGAGCCCGAAGAAACCGTATTACCAGTGGAGGCTGAGAGTTCCCTCAGGTCACGTTGTACGGTTAGATGTAGTCACCCTGCAGGGGGCGACACCCGGTAGCTGTTCAGCCAACAAACTCTCCGCATACGACTTCCTGCTCCCTCTTCAGAACAAAATCATTGCCAGGTGGTGTGGATTGCCAGTGACTGGATCGTCCCCGGTGATGAAGCTGACATCCTCTGGAAACGTCATGCTCgtcacattttcatttagtcGACAGAGGCATGGAGCTATCTTCAAGGCTTACTTTCAGGCCATACCAAAAGCCGAATGCGGCGGCTTTCTGTCAGCTTGGAATGGCACTGTGGTATCCCCTTACTATCCTGCCTACTACCCTCCAAACATAGACTGTAACTGGAAGATCAGGGCTCCGCTGCCCGGCTACCTGCTATCCATAACCATTGTGATGCTGGATATTCAGGACTCGCCCACCACAAGCACCTGTGAGAAAGACTGGCTGGAAATCGGTGGCGTCAAGCTGTGTAATCCAGTTGGGGACAGCAGCAGGAAGAGGATCTACTCTTCCCCTGTGTTACTGCACTTTCACTCCGACGAGTCTTTGACTCACAAGGGCTTTTACCTGGTGTACAGAGCCTTCTCCCCAGAGAGCACGTGTCCGAGGCAGTTCCGCTGCGGAGACGGACGCTGTATTCCTCTGAGgaaagtgtgtgatggagagagggaCTGTGCAGATGGTCGGGACGAGGCCAAGTGCTCGATGTGCAAACCGGGAGAGGTGTATTGTGGGAGTGGGCAGTGCAGACCACATGGGAGTCAGTGTAACCTGCAGGCTTGTGGAGACAGCAGCGAGGAAACAAACTGTGCAGGAAAATGTTACCACATGTGCTCGAATAAAATATGTCTACCCAAGTCTTCTGTGTGTGACGGAGTCATAGACTGCAGAGACCGCAGTGATGAGCTCAACTGCACAAGAGCATTTAAAGGTTGCTCGCCGACATCCTATAAATGTGCGAATGGCAAGTGTATTGCGAAGATGAACCCAGAGTGTGACGGCATCAAAGACTGCAAGGACGGATCTGATGAGATACGCTGTGCAGGGTGTGGCACTCGACCCAGGAAACGGGCGAAGATTGTGGGAGGGACGGATGCCCAGGCGGGTTCGTGGCCCTGGCAGGTGAGCCTGCAGATAGAGCGCTATGGCCATGTGTGTGGAGCGTCGCTGGTGGGAAGCCGCTGGCTCCTCTCTGCCGCTCACTGCTTCCAGGACTCGGACGCCATCAAGTACTCAGATGCTCGTGCCTGGAGGGCCTACATGGGCATGCGGGTCATGAACTCAGCCAGTAATGCCGCCGCCACACGCCAGATCCGCAGGATAGTCCAGCACGCCCAGTACGATCAGTTCACCTCTGACTATGACATCGCCCTCTTGGAGCTCAGTGCCCCTGTCTTCTTTAATGAATTGgtacagcctgtgtgtgtgccagcCCCAACGCATGCCTTTACCTCCGGCACCAACTGCTTCGTCACTGGCTGGGGAGTCCTCACTGAGGAAGgtGAGCTGGCCACCCTGCTGCAGGAGGCCACAGTAAGCATCATCAACCACAAAACGTGCAACAAGATGTATGACGATGCCGTCACTCCCAGAATGATATGTGCAGGGAGCATACAGGGAGGAGTCGATGCTTGTCAAGGAGACTCTGGAGGACCTCTGGTGTGTCTAGAGAGGGGCCGGAGGTGGTTTCTGGCTGGCATCGTGAGCTGGGGCGAGGGATGCGCACGGCAAAACCGGCCTGGGGTTTACACACAGGTCATCAAGTTCACAGACTGGATCCACCAGCAGACTAAAGGCCAGGTGTGACATGTGACAAAAACAGCTTGGATTTCATCATGACCTGCACAAACTGTCGTTCTTCACGGACATCAACCCAGACGCCATGGTGTGTAGTGATACAGTGAACTCCGTCAAGTTTCTCCGACCGACCCCTCTCAGTCCAGTCCTCCAGGCCTCATCTTTAACCACCTCCTACATCTCTGTTTAATAATGCTCTTTTATATcctgaacaaaacacacagtgcagacaTTCAAAGCCTCGAACGACGGACCGTTAGTTTAGTATATTAATGCTCAGTTTAAAGACGTCATAATATGAGTGTCAAGATATGCAAAGAGTACTGCATTTGCTGCATCACTAGTAACATACATTTAATCATATTAACAgcttaaatgatatttatagaCTGATGAATACTCTTCCCTTACTGAGACACCATTGTATCTCCTTCAATTTATAAAGGCCATATAATTAAACTACTGTGAAATTGATTGCATGTAAAGGAATCATAAGGAGCACACCTCCCAAGGAATCatggtgaagaaaaaacccAACCTTCTGATTTGCTGATTGAGTATAGAAGTATTTACCTCAGTTTAGTAATTGTCCTCTCAGTAATAATCTATTGCTTTCGAACAATTTACTTCACCCTGGCTCATGTGGGTAAAGAGATTATATGAACATGAAATAAAGGtatattttgctgtttttgttttttttttatttagcagtaTGTAGCTACCCACTTAATGCTACGTTTATCCTACACACATGCTTTAATTTTTGAATTCATTTTACCCAATTTGTTTTTACATGCAACTCAAATGTAGGAGCAATTTGTTCAATTTAGGGAGTTAATTGCTAAACTGAGTGTACAGATGATTAAGGTGAGAGAGCAGGTTTATTAGACTGATTTTAGACTCCATAGTTTTGCTGTTTCAGCACCACTGCTGATACTCACTCCCCCCCTGTCGGTGAGAGGAAAGACTACAACTCCCTGCAGGTCATTTTCCttatttccttatttccttATTTCTTATATGATGAACAACCTGATATCGATGTCAAATGATCACACGTTATGTTTATGTTACATCTGAAATATTAGACCTATATTAAACAGAGGTGCTATACCAGTTTGACTTTGTGGTTATGTGATTCTGTGCATATAACTTAATTGTTAAAA
>XM_026937908.2
ctctttATGTTTACATTGCACTTCCTGATGATTGGCTGTTGTCCCTGATTAATTTCATGACTTGATGAACACACTGTTAATCAGCTTGAATTTGCGCACAGTGTCTGTTGGATGCCTGTGTGCCACCAGTTCATAGTGGTGCCTTTGTGCCGCGTTGCATCATGGGAGCCGTGCAGCACCTGTGCACGGGCGGGCGCGGGCAGTGAGCGCGCGCAGCGCTGCACCCGCTCAGCTCGGGTTTCTCCGCGCACCGAAAGCGAGGCATCGCTCCGGACTTTTCCCCGCAGCTGCATTTCTCCGTGCTGCGCGTCGTGCTGTGTCGCCTGCGACCGGGAGCCACACGGGACCAGGAATGAGGACTTTCCCCAAAAACAGAAGCTGCGATGTTTACAGCGTATCCGGTTTAGGACACTGTGGAACCGCAGACTCACCTGTACAGGACATTAAAGTAAAGGAGCCGTTCCAAATTCCGAAAAGTGCCTCTAAAAGTGAGAATCAGGCTGGGTCAGACATCAGGCGGCCAGGGGAGAGGAGAGCCACCTTCAGGGCATGGCGAAAGTGGGCGCTGGGTGCCACCCCCCTCATCCCTCTGTCCACTGCCGTTGCACTGACTCTCCATTTCCTTGCATCGTCTCCGTCTTCCACAGTGTTCTTCCTGGGAGGAAGCGTGGAGTTTTCCAACCTCAGCTTCTCACCGGCGCTGGCCGATCCTTCTTCCACACAGTTCCACCTTCAGTCTCAGGCCCTCAGCCGCTATTTCTCAGAGTTATATCAGTCATCACCCTGGAGGCCATACTACCGCCGCTCAGGGATTGTCGCCTTTAGTGAAGGAGTGAATGGGCTCAATGTTTTCTTCTGGAGTAAGTTCTCCGCTCCATCAGCGGCCATTGCAGAGGAGCTGCAGAGATCTAAACCTGCGTGGTTGCAGCGGCATCTTCCTGGCACCAACAAGGTTCTTCACAGCAGACTGGAGGAGCAGTATTACCTGGCGAAGGATGAAGACACACTAAGGCTCCTGGGTTTGAATTTAGacagtgaagatgatgttgacGATGATGACATGGCAGATAAGATAAAGAATCCCAACAATTTGCAGAGTGGCAAGTGGCAGCTTGGACTTCAGGCCATGTCTTTTGACCTCTACGCCAAATATGGCAACAATCGAACACTGAGTTTGGTGAGCCCGAAGAAACCGTATTACCAGTGGAGGCTGAGAGTTCCCTCAGGTCACGTTGTACGGTTAGATGTAGTCACCCTGCAGGGGGCGACACCCGGTAGCTGTTCAGCCAACAAACTCTCCGCATACGACTTCCTGCTCCCTCTTCAGAACAAAATCATTGCCAGGTGGTGTGGATTGCCAGTGACTGGATCGTCCCCGGTGATGAAGCTGACATCCTCTGGAAACGTCATGCTCgtcacattttcatttagtcGACAGAGGCATGGAGCTATCTTCAAGGCTTACTTTCAGGCCATACCAAAAGCCGAATGCGGCGGCTTTCTGTCAGCTTGGAATGGCACTGTGGTATCCCCTTACTATCCTGCCTACTACCCTCCAAACATAGACTGTAACTGGAAGATCAGGGCTCCGCTGCCCGGCTACCTGCTATCCATAACCATTGTGATGCTGGATATTCAGGACTCGCCCACCACAAGCACCTGTGAGAAAGACTGGCTGGAAATCGGTGGCGTCAAGCTGTGTAATCCAGTTGGGGACAGCAGCAGGAAGAGGATCTACTCTTCCCCTGTGTTACTGCACTTTCACTCCGACGAGTCTTTGACTCACAAGGGCTTTTACCTGGTGTACAGAGCCTTCTCCCCAGAGAGCACGTGTCCGAGGCAGTTCCGCTGCGGAGACGGACGCTGTATTCCTCTGAGgaaagtgtgtgatggagagagggaCTGTGCAGATGGTCGGGACGAGGCCAAGTGCTCGATGTGCAAACCGGGAGAGGTGTATTGTGGGAGTGGGCAGTGCAGACCACATGGGAGTCAGTGTAACCTGCAGGCTTGTGGAGACAGCAGCGAGGAAACAAACTGTGCAGGAAAATGTTACCACATGTGCTCGAATAAAATATGTCTACCCAAGTCTTCTGTGTGTGACGGAGTCATAGACTGCAGAGACCGCAGTGATGAGCTCAACTGCACAAGAGCATTTAAAGGTTGCTCGCCGACATCCTATAAATGTGCGAATGGCAAGTGTATTGCGAAGATGAACCCAGAGTGTGACGGCATCAAAGACTGCAAGGACGGATCTGATGAGATACGCTGTGGGTGTGGCACTCGACCCAGGAAACGGGCGAAGATTGTGGGAGGGACGGATGCCCAGGCGGGTTCGTGGCCCTGGCAGGTGAGCCTGCAGATAGAGCGCTATGGCCATGTGTGTGGAGCGTCGCTGGTGGGAAGCCGCTGGCTCCTCTCTGCCGCTCACTGCTTCCAGGACTCGGACGCCATCAAGTACTCAGATGCTCGTGCCTGGAGGGCCTACATGGGCATGCGGGTCATGAACTCAGCCAGTAATGCCGCCGCCACACGCCAGATCCGCAGGATAGTCCAGCACGCCCAGTACGATCAGTTCACCTCTGACTATGACATCGCCCTCTTGGAGCTCAGTGCCCCTGTCTTCTTTAATGAATTGgtacagcctgtgtgtgtgccagcCCCAACGCATGCCTTTACCTCCGGCACCAACTGCTTCGTCACTGGCTGGGGAGTCCTCACTGAGGAAGgtGAGCTGGCCACCCTGCTGCAGGAGGCCACAGTAAGCATCATCAACCACAAAACGTGCAACAAGATGTATGACGATGCCGTCACTCCCAGAATGATATGTGCAGGGAGCATACAGGGAGGAGTCGATGCTTGTCAAGGAGACTCTGGAGGACCTCTGGTGTGTCTAGAGAGGGGCCGGAGGTGGTTTCTGGCTGGCATCGTGAGCTGGGGCGAGGGATGCGCACGGCAAAACCGGCCTGGGGTTTACACACAGGTCATCAAGTTCACAGACTGGATCCACCAGCAGACTAAAGGCCAGGTGTGACATGTGACAAAAACAGCTTGGATTTCATCATGACCTGCACAAACTGTCGTTCTTCACGGACATCAACCCAGACGCCATGGTGTGTAGTGATACAGTGAACTCCGTCAAGTTTCTCCGACCGACCCCTCTCAGTCCAGTCCTCCAGGCCTCATCTTTAACCACCTCCTACATCTCTGTTTAATAATGCTCTTTTATATcctgaacaaaacacacagtgcagacaTTCAAAGCCTCGAACGACGGACCGTTAGTTTAGTATATTAATGCTCAGTTTAAAGACGTCATAATATGAGTGTCAAGATATGCAAAGAGTACTGCATTTGCTGCATCACTAGTAACATACATTTAATCATATTAACAgcttaaatgatatttatagaCTGATGAATACTCTTCCCTTACTGAGACACCATTGTATCTCCTTCAATTTATAAAGGCCATATAATTAAACTACTGTGAAATTGATTGCATGTAAAGGAATCATAAGGAGCACACCTCCCAAGGAATCatggtgaagaaaaaacccAACCTTCTGATTTGCTGATTGAGTATAGAAGTATTTACCTCAGTTTAGTAATTGTCCTCTCAGTAATAATCTATTGCTTTCGAACAATTTACTTCACCCTGGCTCATGTGGGTAAAGAGATTATATGAACATGAAATAAAGGtatattttgctgtttttgttttttttttatttagcagtaTGTAGCTACCCACTTAATGCTACGTTTATCCTACACACATGCTTTAATTTTTGAATTCATTTTACCCAATTTGTTTTTACATGCAACTCAAATGTAGGAGCAATTTGTTCAATTTAGGGAGTTAATTGCTAAACTGAGTGTACAGATGATTAAGGTGAGAGAGCAGGTTTATTAGACTGATTTTAGACTCCATAGTTTTGCTGTTTCAGCACCACTGCTGATACTCACTCCCCCCCTGTCGGTGAGAGGAAAGACTACAACTCCCTGCAGGTCATTTTCCttatttccttatttccttATTTCTTATATGATGAACAACCTGATATCGATGTCAAATGATCACACGTTATGTTTATGTTACATCTGAAATATTAGACCTATATTAAACAGAGGTGCTATACCAGTTTGACTTTGTGGTTATGTGATTCTGTGCATATAACTTAATTGTTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937907.2 True 4198 mRNA 0.50 19 17815640 17828279
XM_026937908.2 False 4194 mRNA 0.50 19 17815640 17828278

Neighbor

gene id symbol gene type direction distance location
flt1 flt1 coding downstream 5345 17784153 ~ 17810295 (-)
flt3 flt3 coding downstream 55647 17743332 ~ 17759993 (-)
naa50 naa50,LOC106579447 coding downstream 89232 17720105 ~ 17726408 (-)
LOC113541196 usf3 coding downstream 96384 17706992 ~ 17719256 (-)
LOC113541192 LOC108256613 coding downstream 179260 17629473 ~ 17636380 (-)
tmprss7 tmprss7 coding upstream 3013 17831292 ~ 17842178 (-)
spata13 LOC108256577 coding upstream 21487 17849766 ~ 17874941 (-)
c1qtnf9 LOC108256147,LOC108442199 coding upstream 48435 17876714 ~ 17879197 (-)
tagln3b tagln3,tagln3b,LOC108442189,LOC107701685,LOC107705223,LOC107654214 coding upstream 51731 17880010 ~ 17883333 (-)
abhd10b abhd10b,LOC108256739,LOC108442198,LOC107716420,LOC107705222,LOC107591218,LOC107654210,LOC107701684 coding upstream 57269 17885548 ~ 17889762 (-)
G333700 NA non-coding downstream 273288 17541846 ~ 17542352 (-)
G333657 NA non-coding downstream 425527 17389862 ~ 17390113 (-)
G333656 NA non-coding downstream 425899 17389454 ~ 17389741 (-)
G333653 ccdc191 non-coding downstream 429994 17385279 ~ 17385646 (-)
G333652 NA non-coding downstream 431617 17383742 ~ 17384023 (-)
G333932 NA non-coding upstream 71560 17899839 ~ 17902383 (-)
G333934 NA non-coding upstream 74354 17902633 ~ 17902855 (-)
G333939 NA non-coding upstream 77629 17905908 ~ 17906806 (-)
G333971 NA non-coding upstream 96212 17924491 ~ 17924789 (-)
G334038 NA non-coding upstream 200296 18028575 ~ 18028834 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 576524 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 675955 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 926216 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 935756 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 1502724 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 79305 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 81045 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 87805 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 609235 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1177219 19005498 ~ 19015855 (-)

Expression


Co-expression Network