skida1 (skida1)


Basic Information

Item Value
gene id skida1
gene name skida1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13274660 ~ 13278025 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937922.2
TTGTGGCTTAAACCAGCACAGGGAACAGCAGTTGCATTTTGGGGGCTTTTAttcgcctctctctctctctctctctctctctctctctctttatccgTTTCACCTTCCCTCTTCTCTTCATGGGGAAGGAGAGAGCTGAAGGGACTGCAGGTATATAAGAGCTCCATGCAACATCTCACATATCCATCATGTTGCGCCTAGCTGAATGGACATGCTGTTTTACATTATTTCAGGACTATTCCTTCtctatttttagatttttttccctctatttcaaacttttttttccctcagtgtGGACCTATTCGTGGTCCACGTTGAACTGATCAGCAGTGATGCCTTGTGATAAAGCAACTGCAGTAGCAGAGGAGCATCAATGCTGGGATTCTTAACAACACAATAAGGAAAATGGGAGACTTGGAGTTTGGCTTCGAGGAAATGCAGGGTGTAAAGCTCGGGTATCTGGTCATTAAAGGCAAGCAGATGTTTGCCCTCTCCCAGGTCTTCACCGACCTCTTAAAAAACATCCCACGGACTACCGTGCACAAACGGATGGATCACCTGAACGTGAAAAAGCATCACTGTGATCTGGAGGAGCTGCGAAAGCTCAAAGCAATAAACTCGGTGGCTTTCCACGCAGCCAAATGCACTCTGATCTCCAGAGAGGACGTGGAGGCTCTCTATTTCTCCTGCAAAACGGAGCGCGTGCTGAAATCCAACAAAAGGAGAACGAAGACAAAAGCAGACGAACACATCCGAGGTGAAGACCGTTCCCACGACAGCACAAACGGCTTCTGGAAGAAGAAACTTTGGCTGAGTTTTCGCGGAGTGTCGCCGACTCTGGCTCTTCGAAACAAAGCTGTCAGACCGGAGCTCTCGTCCAATCTACCTCAAATTTACAGCAAATCCATCTACCAGAACTTTCAACCGGTAACCCCGACTGCATGCAGAGCCTTCAGAAACTATGAAACTGTGCAAATACCTGGAAAATGTGTGGAGTTTAATGAGAAACGCTCGTTTTTTCGAAGCGGCGAGGCGGTGAAGCGAAAGCCGGCTGTGTCCGCCATTTCGGCTCCGTCCGACTCGGAGCTGCTTTACAAAAGGAAAAGGAGGTGCGAGAGACACTTCGGGAGCAGAAAACGACACTACAGGCAGGTCTTGCTCGTTCCTAAGTGCTGCAAACCCAAAGCATGTCTGGCTAACGGATCTCTGAGCCATTTTCACCCGGATCGGGAGCTCTACTTGGAGTCCCGGCATTTTCAGGAGAGCTGCAGCAGCGACACCGAGTGCAGCTCCGCCAACGACTCGGACTTTGGCTCAAGTTTGTCCACCAGCAGTAGCACCAGCAGCTCAACCAACTCTGCAACTACAGACGACGAGGAGGAAGACTCCTTTTCCGGTTCTTCAGAAGAAAGCAGTGATGGAGAGAGCTCGTCTCAGTCCGATTCAAGCTCCGTGTCCAGTCGGGTTTCGGTGCAGAGCATCAGATTCAGGCGCGCGCGCTTCACGAGCCTCAACGCAAAAGCGCCTCTGGTTCTGCAGCCTACTTTCCACTACAGGTCTAATTTTCAACCCAAAAATGGAGGTGTGCATGCAAGTGCTGCAGCTCTGGATTGTGagaaagggaggaaaaaaacgaCTTTGGACATTACCGACTGGAAGCACAGACGCAGGGAATGTGATGACTGGGACTGTGGGAAAAATGTGTGCACGGTTGGGAATTGTTTCTCAGGCCTGAAAAGAGTCGTGGCTCCACAAACGGTAGACTTTTCAAACGAGCCAAAGACAACCGAGCTTCTAAGTGgtagaaataaatatgtaagtTTTACATCCTGTGCAGATGGAAAGGTGTTTCCCCAACAAAGAGCGTCAGGATACCAAGCCACATTACCACACTGCAATCAGGACAAAGACACTGGCATTTCTAAGGCTCATGATAGCAATTTTTCGGAAGGTGCAAATTCCAAAAAAGATGCAAAAACAGTCAGCTGCCTCAAGCAACCATCACCTCTGAAAACAGTAAAGACTGAGACCGAGGAGTTCACCACAATCACAAACTCAGACACTACAGGAGACACGAAACTGAACCACGTGAAAATCAAAGTGGAGGACACTTTTGATGAGTATGAATATGCAACCCAAGACCATGCTCACCAATGCAAAGATAAATACGATGAAAATGACGCGGACGGTTTGTGTATCAGTGCTGATACTGCAGAAACAGATCGTGGTAAAGATGGCAGACAAACATTTCCCCCTCCTTCTAAACAGGAACCAAGCAGCACTTTAAACACTCAAGGGGATTACAAAAACGGTGCAAGGGTCAGGAAAAGCTACCGGACTCCAGTTTGtgggaaaaagacagaaaatggaGTTAGGACAAATGCGAAGGTGGACAGGAGTCCTAGACCTGCTGGCAAATGTGTGAGCAAACGAACTGCCCAACATGCATCCTCTTTGAAAACAACTTTTAACTTCATGGCCAATTTTCCATGCCCTCCGTCTCTGATCATCGGTAGTGATGGAGATTTGAGTCCTGCTTACTCTTTAACCTCTTTCAGGACTAACCAGGTGCCTCATCCTTCTCATCCGGTGTGGACATGGCAGCTCGGCACTTCTGTTATACCTCCTCACCTTAACCAGAGATTcaggaaaacaacaacataagCCAATATTTGAGAGGACAAGTCTTAAGGCACTGATAATGATtataaatggcttttttttttggttttggtgaGCATGCAGGAGGCCTACTCCTTCACTCCTTCATCACGTGCCACAGAAGCCCAGCATTTTTTTCACCCTGCTTTACGGAACactgtggatgttttttttttatatatatatattttcattaacaATGGCAAAGAACATCTTGTGGATTTGTACTAGGACCTGTTGGAATTTCAGACTACGTATGAATGCCATTTTGGAATAGACCCATACATATTGCCAGGAAAGCTTGGCTTTGActattaaaataatcttttaattttttttttttttttttttttgcaatagtTGCAGATCCCAAATATTTTCCCCAAACGTCCCCATTCACAGGACTCTTAAACTCATTGTAGGCATCTACATTGGACCGGGTTTACGTATTTATTCAAGGGCTGAAGCCCAGTTGGTCCAGACCCCCGTCCCATCCTGTCCCgtccccccaacacacacatacacacaccacaacaatAACAGAAAGGCCCTGGACGATTGACAATCAGGAGCTGTTTGGATTTGCACGAAGTTAAGAAGAGGGGAAAAACTCCAAATCGATGTGGTTAAGGCATTGATAGTCTATGGTAGGAGCTGAAGCACAGATTTGACTATGCATTGTTACAATGCTGTACTGCTCCA

Function

symbol description
skida1 Is expressed in several structures, including central nervous system; midbrain neural keel; neural plate; neural tube; and presumptive telencephalon. Orthologous to human SKIDA1 (SKI/DACH domain containing 1).

NR:

description
SKI/DACH domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937922.2 True 3366 mRNA 0.46 1 13274660 13278025

Neighbor

gene id symbol gene type direction distance location
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding upstream 232144 13021167 ~ 13042516 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding upstream 259551 12766560 ~ 13015109 (+)
ccl34b.4 LOC100304628 coding upstream 562009 12710626 ~ 12712651 (+)
LOC113541349 LOC108256200 coding upstream 566657 12706939 ~ 12708003 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding upstream 775614 12428457 ~ 12499046 (+)
armc3 armc3 coding downstream 44312 13322337 ~ 13334525 (+)
msrb2 msrb2,LOC107735060 coding downstream 58313 13336338 ~ 13341661 (+)
c8g NA coding downstream 65721 13343746 ~ 13350216 (+)
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding downstream 95539 13373564 ~ 13379652 (+)
trnat-agu_17 NA coding downstream 107176 13385201 ~ 13385274 (+)
G331487 NA non-coding upstream 249 13274127 ~ 13274411 (+)
G331486 NA non-coding upstream 619 13273743 ~ 13274041 (+)
G331482 NA non-coding upstream 5018 13269427 ~ 13269642 (+)
G331480 NA non-coding upstream 10074 13264349 ~ 13264586 (+)
LOC117595778 NA non-coding upstream 14102 13258456 ~ 13260558 (+)
G331468 NA non-coding downstream 9422 13287447 ~ 13290399 (+)
G331498 NA non-coding downstream 82255 13360280 ~ 13361018 (+)
G331496 eif2s3,LOC102783563 non-coding downstream 83344 13361369 ~ 13362702 (+)
G331502 NA non-coding downstream 102619 13380644 ~ 13382636 (+)
LOC117595809 NA non-coding downstream 679999 13958024 ~ 13962184 (+)
G331476 NA other upstream 16244 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 561982 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 1117873 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1526101 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 2290451 10874209 ~ 10984209 (+)
stau2 stau2,LOC107691439 other downstream 1856328 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 1973610 15251635 ~ 15265895 (+)
G332636 NA other downstream 2288150 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 3822139 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 4007057 17285082 ~ 17302004 (+)

Expression


Co-expression Network