bhlhe22 (bhlhe22)


Basic Information

Item Value
gene id bhlhe22
gene name bhlhe22
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18214863 ~ 18217206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937924.2
AGGTGGATGTGGACACACAGGAGCGCATTTAGGAGGAGTCTCCGCTTCCTCGCGTCTCACTTTTGATTTGACAAGTGAAGATTCGCGCTTCACATGACACACACGTAAGAGTAAGAGATTGCGCGTCTGAGTCCAGTCTGCgggataaaaaaacaataaacgaTGGACAGGAGGACGAACTTTGGGGACGTTTTTCACAAAACTCTGAGCGTCTCGGGTAAAAAGATGGACTCGTTGCGCGCTCCGGGTGCCGAGCCGCCGTGCAGAGAGCGCCAGTCGCCGCTCGGATCTTTCGAACCGCCCGACTCGGACCCGCTTCAGGCTGTCGGAGGAGGAGTGGGGTCTCTCGGCCTCCCTGGTGGATCCATGCGGGCGCCATACGGCGTTGGAGGCGAGGGCACGAGCGGACAGAGCAGCGGCGGGGAGCAGAGTCCGGACGACGACAGCGACGGCCGGTGCGAGATGATGCTCCTGGCGACGGCTCGAGACGGGAGGACGACTTCTGCAGCGGCGGTGCGTCGAGCGCCAAAGTGCGACACGGGGAAGAAGAACCGGGAGCAGAAGATGCTGCGGCTCAACATCAACGCGCGCGAGCGGAGACGGATGCACGACCTGAACGACGCGCTGGACGAGCTGCGAGCGGTCATCCCTTACGCGCACAGCCCATCCGTGCGCAAGCTCTCCAAGATCGCCACGCTGCTCCTCGCCAAGAACTACATCCTCATGCAGGCGCAGGCGCTGGAGGAGATGAGGCGGCTCGTGGCGTACCTGAACCAGGGCCAGGCCGTGTCGCTTGCGCCGAGCCTGAGCGCGTACGAGCAGCCGCCCGGGTACCCCGCGTTCCCCTCCGGAGCCGCCGCGGCCTCTTCATGCCCCGACAAATGTGCCCTTTTCAACAGCGTCACCTCCAGTCTGTGTAAACAGTGTACCGACAAGCcttaaaactctctctctctctctctctctctctcttctctctctctctctctctctctctgtgagacTGAAACTGACGCCTGTAGGCTGCATTTCATATTCCAAGAACGGACAGAAAAGAATTCTCAACTTTTCTTACATCGACTAGGATTTCAGCAGATTTGCCGCAGATCCAACAGTTTGTTTTGttcgtttttctttctttctttttttttttgttcagataCTTgatatctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgcgctgtgtatgtatatataaagtaaGTGCTGGTGCGAGTGAATTGAAAGCAAACAAAGTCTATGTGTGAATGTTGAGGATGGACAGTTTATGGAAATATGGACCCTAACACAGTGAGCTGTTCCGACCTGGCAACATGTGAGCATTACTTTTACTTTGCCTGCACCTTTTATCCTGGGAGCTCTTGCTTAATAGCTAtcctgcaataataataataataataataataataataataataataataatgtttcagtTAGGAATTTCACGTCCTTGTTTGAGTTTTGGTGATAATAAACTAGTAGCATCTATGACTTGGAAAGCAGAGGATTGGAAATTGCAGAAATGAGGGACTTTTTTGTCACAGCTGATTTATAACATTCCCACTGCAGGCTTGTTTGAGTCACTGAAGTTGACTTTGGGTTGAATTTATAGGTCTGCATGCGTGCTATAAGTCTCTTTGCTGTACATctggcttctttctttcttttgtattcTTTCCCTCCACTCTCATGCAGCAGGCTGTGAATGAGATTTCGGCTTGGGCTTGTTGTCAGGTCATCCTGATGAGCACTGCAGATACATCCGGTTCACTATGACTGCACAGGGCCATTTGTACATGTTgatgtcctgaaaaaaaaaagctttattaaaatattttgatcaAACTTACACTTTTTCGCCTGGTTGTTTGATGGGAAAGAGTGTGAAGAGACTAAGGGCTGCTTGGTCAGATATTTGTGCATATCTGTGAAAGATTTAAGTGTAGGATGAAAAGCTAACGAGTCATGcaaacatgttttcatttttttaaacaaacctaTGACAAAATAAGTCGCAAAAAATCTAATATCGAGATTATATGTGTTATAAAGTCCTTCTAAATGAAGGCATGATGGATGAATATAGTGGAGTCTCGAGTATCATAAGAGAAGGAGACtaattatgattataattattgAAACAATTTCCATAACGGTGTGTGTCATGTGTTAATTGGGAAACAACGAAGTAGGAAAACTGTCGAGTGCAATCATTTAATGAAACGTAGCGTTAAAGCAATTAAAAGCTCGCGCAGGTGATTAGGGAATGTAATTATTCACTGGTTTAATTGGGTGTGTTTAATCAC

Function

symbol description
bhlhe22 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within neurogenesis and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in immature eye; midbrain neural rod; nervous system; neural plate; and neural tube. Orthologous to human BHLHE22 (basic helix-loop-helix family member e22).

NR:

description
PREDICTED: class E basic helix-loop-helix protein 22

GO: NA

KEGG:

id description
K09086 BHLHB4_5, BETA; class B basic helix-loop-helix protein 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937924.2 True 2343 mRNA 0.48 2 18214863 18217206

Neighbor

gene id symbol gene type direction distance location
ythdf3 ythdf3,LOC107666630,LOC107705256 coding upstream 116948 18087647 ~ 18097915 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding upstream 231443 17973204 ~ 17983420 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding upstream 251392 17960988 ~ 17963471 (+)
chodl chodl coding upstream 263237 17942428 ~ 17951626 (+)
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding upstream 475278 17727853 ~ 17739585 (+)
dnajc5b dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861 coding downstream 155516 18372722 ~ 18378196 (+)
trnaa-agc_15 NA coding downstream 162096 18379302 ~ 18379374 (+)
trnaa-agc_16 NA coding downstream 162736 18379942 ~ 18380014 (+)
trim55b trim55,LOC107590338,LOC107663638 coding downstream 163085 18380291 ~ 18390865 (+)
si:dkey-97a13.12 NA coding downstream 179021 18396227 ~ 18432150 (+)
G334077 NA non-coding upstream 11183 18203063 ~ 18203680 (+)
G334078 NA non-coding upstream 11958 18200395 ~ 18202905 (+)
G334032 NA non-coding upstream 106059 18085319 ~ 18108804 (+)
G334028 NA non-coding upstream 135493 18079151 ~ 18079370 (+)
G334005 NA non-coding upstream 169686 18043824 ~ 18045177 (+)
G334120 NA non-coding downstream 79437 18296643 ~ 18324885 (+)
G334209 NA non-coding downstream 218515 18435721 ~ 18437406 (+)
G334210 NA non-coding downstream 221943 18439149 ~ 18439446 (+)
G334211 mybl1 non-coding downstream 223049 18440255 ~ 18440656 (+)
G334219 NA non-coding downstream 283577 18500783 ~ 18530907 (+)
G333943 LOC108256468 other upstream 221849 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 418342 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 672476 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 912859 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 1104836 17100164 ~ 17110027 (+)
mtfr1 mtfr1 other downstream 98148 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 250672 18467878 ~ 18486009 (+)
G334373 NA other downstream 475943 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 494842 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 1100651 19317857 ~ 19427936 (+)

Expression


Co-expression Network