cmbl (cmbl)


Basic Information

Item Value
gene id cmbl
gene name cmbl
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13386074 ~ 13396461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937943.2
TCCAACAACTGTTCTCTGTGGGCGTTTCTAAAGAGGCCACGCTCAAATAAAGGTGTGTTTTCCTCTTCGACCTTCCCAGTTTCGGAGCCTCTTCACTTTTCTCTATTACAGTTGCAGTGTCAAATATCCACGATGGCAAATGAAGCCAGGCCATGCCCGTGTGACATTGGGGACAGGATGGAATATGGCAGCCTTGGCGAGGAGGTTCAGATTGAGCATGTTAAAGCTTACGTGGTGAAACCTAAAGCACCAACAGACAAAGCAGTCATTGTAATTCAGGACATTTTTGGATGGCAACTACCCAATACAAGATACATGGCTGACATGCTCGCTTCAAATGGATATgtTGCTGTTTGCCCAGACTTCTTTCTTGGAAAGGAGCCATGGAGTCCTTCAAGTGATTGGTCAACATTTCAGGAGTGGCTTGAAGACAAAAAACCTACCAACATCAACAAgGAGGTGGATGTGGTTTTGAAATATCTCAAGGAACAACGTGGAGCTAAAAGGATTGGAGTGGTAGGGTTCTGTTGGGGCGGAGTGGCCACACACTACATAGCCCTCCAATATCCTGAAGTCAAGGCTGGGGTTTCAGTTTATGGGAtcattaaagagagagaggatagtTATGAACTCAAATGTCCGACTCTGTTCATCTTTGGTGAAAACGACACAGTGATACCACTTGACCAGgtGACAACACTTGAGGCAAAACTGAAGGACAAGTGCACTGTTGACTTCGAAGTGAAGGTTTTCCCCAACCAAACTCACGGATTTGTGCATCGTAAACGGGAAGACGTCAATCCGACAGACAGACCTTTCATTCAGGAGGCTCGGGAGGACATGATTAACTGGTTAAATAAGTACATGTAAAATTAGAGCAAATTATCTGGTTTAAAGTAAAAGTTTCCTTACCCACTCTTACCCACTCTGACACTCTTGTTGATGACCCAGGACGTGTTTGTGTCCAAAGTGCACACTGCATTCGTGAAGCTACTATAGTATAATACATgactaaatcatcacacactctccttaAAAGACATTTGGTTCAGTAACAACAGTTGCACATAAAGGTTTCATAAAATACCCTAGCAAGTTTATTGCCCTTagaagtaagcagataaaagatcAAGAGTTGACTTAAATTGTGGCATTTGcttttggaatctgttgctgttaactttcaatatgaagtccaaagagctgtcgctgccagtgaagcaatccataattaaattgaaaaatgaaaacaaatcagtcagagagatagcaagaatattaggtgtggccaaatcaactatttggtcCATTCTTAAAAAGGCAGAACACACTGGTGACCTCATGAACAACCACAGGtccggaagaccacggaaaacaactgagGGGGAAGACAGacgaattctttccctggtgaagaaaaacccctttacaacagttggccagatcaagaacaccctccaggaggtaggcgtatctgtGTCAGAGTCAACAAttaagagaagacttcaccagagtaaatacagttGGTCTGCCGTAAGcctcagagagaggaagactaAAGGTAGAcataaaaatgccaaaaaacaaatgaaaaaacgTGTAAGTTCTGAAACAACatcagatggacagatggaacAAGAATCTGTTTTACCAGAATCAGGGGAAGAGACAAGTAAagagaagggaaagaagtgCTCATGATCTGAATGATAGTACGTCATCTTGTGAAgcctggtggaggtagtgttagGGTATGGGCATGTATGCCTGCAagtggaactggttcccttttATTCATTGATGTTTCACAGTGCAGATTGATGATTGAGATTACCATACTGAAGATTATTCTCCAATAATGGCACATCCCAAAGGgttcttattcctcttatgccacagcgatttgccaaagattacaatgaaaaaaatttattgatgaacaacacattgtgctttttaatcGTTTATAGTTGCATATAATGCTGCGGAATGTCAGCGAGTTATTTGCTGTCATCACTTACAAAAAACAGTCTTCCCTCTCTAGcctctttttccccctctcttgatgttaagacaaaaaatgcagcttatcataTTTTTGAGAAACTAGAGTGTTCCTGTGGTAAACACTTTCCCATAGAAAATTAATTGTTACAAACCGACACTAGAGattccttccttaaatgttaagtaaatgtccccatacagaaagcttcaccatgtaaatgattatatgtttttcttttgttaaataacatgtttttaaaatttattattagctttagatctcTGAGGTCTCTTTGTCCATTTTTACATACCACAATATGAAatctaaagaaacaaaattcaGACCGTGCATGCTTATAGAATCTGGCCAAGAATGGTCAATGTCACTGTTTTCAACTGCTGATACAACTGAGGCTGTATGTGATTATGTGCCTGCTTCAGATATGCAGGTTGCTTTGCTTGCATCTGTGAAGGAAGAGATAGGTTGTGATAAAAATGGAGCATATTCCTCCCACTGTTATAATGATTCCTGTGTGGTTGTCcctgttcttttcattttaaagggGGTGAGATGAGCAGGAGGAGCTGAGGGAGGGGAGAGGGGTCACTCGGTACAGCTCActgagatagacagagagaagctTTACTAACTGACATCTCTGTGAGACTGGGGTAACATATGCAGTTGTATGTTATGGAGATGTGTTGATCATATTTTACTTTTAGAAATAGTGTAATGCATTAATTTAGAGTGATAATCCTTTATACTATGCATTCTCCCCAGACacagatatacactatatggccaaaagtatgtggtcacctgaccatcaacaCCAATATTtgggccttcctcaaacagttgctacaaagttggaagcacaaaattgtgTTCGATGTCTTTGTAAGCGGTTGTATTACAATTTGCCTTCACTGGAACATGAATGAgatccatgaaaacatggtttagcaaggttggagtggaagaacactGGTGCCCTGCACAAATCCCTGAACTtgactccactgaacacctttggaatgaactggaatgccaacaTACCCCAGGCCATGGTCCAAATACTAGTGCAaacccttcccagaagagtagaggttattgTATCAGCAataggggaactaaatctggaaagtgatgttcagaaagcacataagggtatgatggtcaggtgtccacaatcttttggccatacagtgtattacTATACTTACTTAGATTAGTTATATTGTAATGTTTCATAGGTATGGTAGATACGTGACAATGTTCTACTGTGTGATTGCATTAACCAACCTAGTAGGTACAAAGactgaaaattattttcttaGAGAATGTGGCTGATACATAATAGCATCATTTTCCTTTCTATCTTAAAGTTAAGGGTTAGTTAAGTTAGTGCTATGGGTGCTTTATAAGGtactttcattattttactCTATAATACTATTCCTGGATTCCAGATGGCAGAAATGTGTTGATGGGAGAATTGTCAATCAGAAACTCAAATCATGTCAATGAGAAATCTGTTAAAATGAAATAGCAATGCTTTTGTTGACTTAACTAATAATTGGATAATTTGATAATtgacttcattattttttttttttaataaatcatacaaTGGTTTTATTAC
>XM_026937944.2
AAAGAGGCCACGCTCAAATAAAGGTGTGTTTTCCTCTTCGACCTTCCCAGTTTCGGAGCCTCTTCACTTTTCTCTATTACAGTTGCAGTGTCAAATATCCACGTGCCAAACAATCACGATGGCAAATGAAGCCAGGCCATGCCCGTGTGACATTGGGGACAGGATGGAATATGGCAGCCTTGGCGAGGAGGTTCAGATTGAGCATGTTAAAGCTTACGTGGTGAAACCTAAAGCACCAACAGACAAAGCAGTCATTGTAATTCAGGACATTTTTGGATGGCAACTACCCAATACAAGATACATGGCTGACATGCTCGCTTCAAATGGATATgtTGCTGTTTGCCCAGACTTCTTTCTTGGAAAGGAGCCATGGAGTCCTTCAAGTGATTGGTCAACATTTCAGGAGTGGCTTGAAGACAAAAAACCTACCAACATCAACAAgGAGGTGGATGTGGTTTTGAAATATCTCAAGGAACAACGTGGAGCTAAAAGGATTGGAGTGGTAGGGTTCTGTTGGGGCGGAGTGGCCACACACTACATAGCCCTCCAATATCCTGAAGTCAAGGCTGGGGTTTCAGTTTATGGGAtcattaaagagagagaggatagtTATGAACTCAAATGTCCGACTCTGTTCATCTTTGGTGAAAACGACACAGTGATACCACTTGACCAGgtGACAACACTTGAGGCAAAACTGAAGGACAAGTGCACTGTTGACTTCGAAGTGAAGGTTTTCCCCAACCAAACTCACGGATTTGTGCATCGTAAACGGGAAGACGTCAATCCGACAGACAGACCTTTCATTCAGGAGGCTCGGGAGGACATGATTAACTGGTTAAATAAGTACATGTAAAATTAGAGCAAATTATCTGGTTTAAAGTAAAAGTTTCCTTACCCACTCTTACCCACTCTGACACTCTTGTTGATGACCCAGGACGTGTTTGTGTCCAAAGTGCACACTGCATTCGTGAAGCTACTATAGTATAATACATgactaaatcatcacacactctccttaAAAGACATTTGGTTCAGTAACAACAGTTGCACATAAAGGTTTCATAAAATACCCTAGCAAGTTTATTGCCCTTagaagtaagcagataaaagatcAAGAGTTGACTTAAATTGTGGCATTTGcttttggaatctgttgctgttaactttcaatatgaagtccaaagagctgtcgctgccagtgaagcaatccataattaaattgaaaaatgaaaacaaatcagtcagagagatagcaagaatattaggtgtggccaaatcaactatttggtcCATTCTTAAAAAGGCAGAACACACTGGTGACCTCATGAACAACCACAGGtccggaagaccacggaaaacaactgagGGGGAAGACAGacgaattctttccctggtgaagaaaaacccctttacaacagttggccagatcaagaacaccctccaggaggtaggcgtatctgtGTCAGAGTCAACAAttaagagaagacttcaccagagtaaatacagttGGTCTGCCGTAAGcctcagagagaggaagactaAAGGTAGAcataaaaatgccaaaaaacaaatgaaaaaacgTGTAAGTTCTGAAACAACatcagatggacagatggaacAAGAATCTGTTTTACCAGAATCAGGGGAAGAGACAAGTAAagagaagggaaagaagtgCTCATGATCTGAATGATAGTACGTCATCTTGTGAAgcctggtggaggtagtgttagGGTATGGGCATGTATGCCTGCAagtggaactggttcccttttATTCATTGATGTTTCACAGTGCAGATTGATGATTGAGATTACCATACTGAAGATTATTCTCCAATAATGGCACATCCCAAAGGgttcttattcctcttatgccacagcgatttgccaaagattacaatgaaaaaaatttattgatgaacaacacattgtgctttttaatcGTTTATAGTTGCATATAATGCTGCGGAATGTCAGCGAGTTATTTGCTGTCATCACTTACAAAAAACAGTCTTCCCTCTCTAGcctctttttccccctctcttgatgttaagacaaaaaatgcagcttatcataTTTTTGAGAAACTAGAGTGTTCCTGTGGTAAACACTTTCCCATAGAAAATTAATTGTTACAAACCGACACTAGAGattccttccttaaatgttaagtaaatgtccccatacagaaagcttcaccatgtaaatgattatatgtttttcttttgttaaataacatgtttttaaaatttattattagctttagatctcTGAGGTCTCTTTGTCCATTTTTACATACCACAATATGAAatctaaagaaacaaaattcaGACCGTGCATGCTTATAGAATCTGGCCAAGAATGGTCAATGTCACTGTTTTCAACTGCTGATACAACTGAGGCTGTATGTGATTATGTGCCTGCTTCAGATATGCAGGTTGCTTTGCTTGCATCTGTGAAGGAAGAGATAGGTTGTGATAAAAATGGAGCATATTCCTCCCACTGTTATAATGATTCCTGTGTGGTTGTCcctgttcttttcattttaaagggGGTGAGATGAGCAGGAGGAGCTGAGGGAGGGGAGAGGGGTCACTCGGTACAGCTCActgagatagacagagagaagctTTACTAACTGACATCTCTGTGAGACTGGGGTAACATATGCAGTTGTATGTTATGGAGATGTGTTGATCATATTTTACTTTTAGAAATAGTGTAATGCATTAATTTAGAGTGATAATCCTTTATACTATGCATTCTCCCCAGACacagatatacactatatggccaaaagtatgtggtcacctgaccatcaacaCCAATATTtgggccttcctcaaacagttgctacaaagttggaagcacaaaattgtgTTCGATGTCTTTGTAAGCGGTTGTATTACAATTTGCCTTCACTGGAACATGAATGAgatccatgaaaacatggtttagcaaggttggagtggaagaacactGGTGCCCTGCACAAATCCCTGAACTtgactccactgaacacctttggaatgaactggaatgccaacaTACCCCAGGCCATGGTCCAAATACTAGTGCAaacccttcccagaagagtagaggttattgTATCAGCAataggggaactaaatctggaaagtgatgttcagaaagcacataagggtatgatggtcaggtgtccacaatcttttggccatacagtgtattacTATACTTACTTAGATTAGTTATATTGTAATGTTTCATAGGTATGGTAGATACGTGACAATGTTCTACTGTGTGATTGCATTAACCAACCTAGTAGGTACAAAGactgaaaattattttcttaGAGAATGTGGCTGATACATAATAGCATCATTTTCCTTTCTATCTTAAAGTTAAGGGTTAGTTAAGTTAGTGCTATGGGTGCTTTATAAGGtactttcattattttactCTATAATACTATTCCTGGATTCCAGATGGCAGAAATGTGTTGATGGGAGAATTGTCAATCAGAAACTCAAATCATGTCAATGAGAAATCTGTTAAAATGAAATAGCAATGCTTTTGTTGACTTAACTAATAATTGGATAATTTGATAATtgacttcattattttttttttttaataaatcatacaaTGGTTTTATTAC

Function

symbol description
cmbl Predicted to enable hydrolase activity. Predicted to be located in cytosol. Orthologous to human CMBL (carboxymethylenebutenolidase homolog).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01061 E3.1.1.45; carboxymethylenebutenolidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937943.2 True 3656 mRNA 0.39 6 13386074 13396461
XM_026937944.2 False 3642 mRNA 0.39 7 13386103 13396461

Neighbor

gene id symbol gene type direction distance location
trnat-agu_17 NA coding upstream 800 13385201 ~ 13385274 (+)
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding upstream 6422 13373564 ~ 13379652 (+)
c8g NA coding upstream 35858 13343746 ~ 13350216 (+)
msrb2 msrb2,LOC107735060 coding upstream 44413 13336338 ~ 13341661 (+)
armc3 armc3 coding upstream 51549 13322337 ~ 13334525 (+)
mtrr mtrr coding downstream 9703 13406164 ~ 13447748 (+)
cbln2b cbln2,cbln2b,LOC107657802,LOC107596058,LOC107741967 coding downstream 578779 13975240 ~ 13980189 (+)
rttn rttn coding downstream 837583 14234044 ~ 14295771 (+)
cd226 NA coding downstream 901099 14297560 ~ 14309471 (+)
crispld1a LOC108256732 coding downstream 990500 14386961 ~ 14405762 (+)
G331502 NA non-coding upstream 3438 13380644 ~ 13382636 (+)
G331496 eif2s3,LOC102783563 non-coding upstream 23372 13361369 ~ 13362702 (+)
G331498 NA non-coding upstream 25056 13360280 ~ 13361018 (+)
G331468 NA non-coding upstream 95675 13287447 ~ 13290399 (+)
G331487 NA non-coding upstream 111663 13274127 ~ 13274411 (+)
LOC117595809 NA non-coding downstream 561563 13958024 ~ 13962184 (+)
G332111 NA non-coding downstream 1291702 14688163 ~ 14703270 (+)
G332238 NA non-coding downstream 1548530 14944991 ~ 14945212 (+)
G332248 NA non-coding downstream 1559399 14955860 ~ 14956067 (+)
G332334 NA non-coding downstream 1669514 15065975 ~ 15113514 (+)
G331476 NA other upstream 127658 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 673396 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 1229287 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1637515 11717415 ~ 11748559 (+)
G330257 NA other upstream 2411159 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 1737892 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 1855174 15251635 ~ 15265895 (+)
G332636 NA other downstream 2169714 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 3703703 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 3888621 17285082 ~ 17302004 (+)

Expression


Co-expression Network