LOC113541141 (LOC108256549)


Basic Information

Item Value
gene id LOC113541141
gene name LOC108256549
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15398281 ~ 15414443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937949.2
TACTTTAGCCGTGTTTGACGCGGAGGAATTTAATTTTAGTCCCACCCAAATTCCTAGAAGTATCTAAAGGGAATATCTTTGCTTTCGGTTTCAGTTTGAGTGTATTTGAGTATTTAACTCAGGGACACCACAGACAGAGCGGTTCTTGTACAAATGGCAAGAGTTTTGACTTTTTGCTCCACGGTTCTGACTGTGTTAGGGCTGAGCCAGTCCGCCACCAGGACCTATTACATCGGGATTCGAGAGCAATACTGGAATTACGCTCCCAGTGAGAGGAATCTAATCACTGACGTTGCTATCAAGCATGACAAGCATGCTTCTACTTATCTGTCCAATAGTCCAAACCGGATTGGTAGTGTGTATAAAAAAGCTGTGTATAAACAGTACACAGATAGGACTTTCACCATCGAGGTGCCTAAACCGGAATGGCTGGGATTCCTTGGACCTGTGATCCGTGCAGAAGTGGGTGATGACATTGAGGTGCACATGAAGAACTTTGCATCTCGGCCTTATTCAATCCATCCACATGGAATCCTCTACAAGAAGGACGCTGAAGGTGCATGGTATCCGGATGGTACATCTGGTGGGAATAAGAGTGATGATGCTGTGGATACAGGACAAGTCTACACATACAGATGGAAGGTGACAGAAATGTTTGCTCCTACAGAGTCTGACTCTAAATGTCTTACATCAATGTATCACTCTCATGTAAACGCACCGAAAGACATAGCAGCAGGACTCATTGGAGTGCTGCTCATCTGCAAGAAGGGAGCTCTGGACCCAACTGGACTTCACCAATCGGGCATGCCTCATGAGTTTTTCTTGATGTTCAGTGCAGTGGATGAAAATCTTAGTTGGTATCTTGAagaaaacattaacaaattCTGCCCTGAAGCTACTCATCTGAGAGAAGATACAGAGTTTCACCATTCAAACCAGATGCACTCAATAAACGGTTTTGCTTATGGCAACTTGCCAACACTGGAAGTATGTCTCAGAAGCCCTGTGTTCTGGCATCTTTTTGGTATTGGGAATGAGATAGATCTTCACTCCattcacttccatggccacaccCTGCTCAACCAAGGTCACCGTACTGATGTCCTCAGTGTATTTCCTGCCACGTCAGTCACTGCCAAAATGGATCCCATGACAACTGGGAAGTGGTTGTTCGGGTGTCAAGTTGATGATCACATGCATGCAGGTATGCAGGGCTTTTATGAGGTCTCTTCATGTGGAAATACTGCACCCACAGTGCCCAGTGCTGGGCATGTCAGGCGTTACTACATTGCTGCAGAGGAGATACTTTGGGAATACGCCCCCTCAGGGAAAAACAGACTGACCAACAGACCACTAAATGAAAAAGACAGTGACTCTGAAGAATTCTTCAGTACAGATGATGGAAAGCTGGGAGGAAAGTACTGGAAGGTCAGATACACTGAGTACCACGATGACACCTTTACTTCCAAAATCGAGCAAAGTGGTTCAGAAAAACACCTAGGCATTCTGGGTCCTGTCATTAGGGGAGAACCTGGTGATGTCATTGAGGTGACATTTCGAAATAAGGCACGTCGTAACTTCAGTATGCAACCTCATGGCGTGTCATATGACAAAGCTTACGAAGGAGTCATATATCAGGATGGTTCTCAGAAAGCAGGGGCCAGTGTGGCACCAGGTCAGACGTTTCCATATCGTTGGCGGGTGACAGAAGGCCCCTCGCCCAGTGACCCACCCTGCCTGTCATATTTGTATTACTCCGGTACAGATCCTGTTCCTGACACCAGCTCTGGTTTGGTGGGACCGTTACAGGTGTGCAGGAAAGGAGTTCTGGATGAGAGTGGTCGACAGcatatAGGGTCGGAGGTGCAGAAAgagtttttccttcttttcactGTGATGGATGAAAACAAAAGCTGGTATCTGCAGAAGAATATTGAAGCATTTGGTAGTGATGAGTCAGACCCAGAAGACTCAGGATTTCAGGAGAGCAATAAAATGAGCTCGGTGAATGGCTTCATGTATGGAAACCTTCCTGACCTTGATTTGTGTGAGGGGGACCATGTTGTGTGGCACTTGCTGGGGTTGGGCTCAGTGAATCTCTTTGGCGTTTACTTCCAGGGCAACACGTTTCAGCTGGATACCACTACACGTgacacactcactctcttccCTCACTCCAGTGTCACCGTCTCCATGACACCTGACAATGATGGTCTTTTTGAGCTGAGCTGTCTGACAGCTTCCTACTACCGTGGTGGCATGTGGCAGCTCTACACTGTCAAACGCTGCACATCGAGTCAGAACCCTGGTTCAGAAGTTACGACCTTTCAGCCCGACGTGTATTTCTACTTGGCTGCTGAAGAAATGGAGTGGAATTATGCCCCAAACCGAACATGGGAGTTGGAGAAACTTAACACTACGCTCAACAAAAGCTCTGGAAGTGTTTACCTCACAAAATCAGAGAAATCTATTGGGTCTGTATACAGAAAGGTGGTCTACCGCAAATACAAGGATGCGACCTTCACAGAACAGGATGTCAGTGGTTCTGATGAAGAGCATTTAGGCATTCTGGGTCCCATTCTCAGGGTGCAAGTTGGTGAGAAGGTCCAGGTTGTGTTTAAGAACAATGCCACAATCCCCTATTCAGTTCACGCTCATGGAGTGAAGACCAGTAATGCTCAACCTGTTTCTCCAGgtaaCACAACAACGTATAACTGGACTATCAGTTCAGGTCCTGGACCCACTGAGTCAAATTGCAAAACCTATGCCTATTACTCATCAGTGAACTTTCTGAAGGATTTGGCGAGTGGCTTGGTCGGGCCATTGGTGGTGTGTCGTAAGGGGACTCTGAATGAAAGCAGACGGCGAAATGACGTGGATAAAGAATTTGCTCTGCTCTTCATGGTGTTTGATGAGAATGAATCGTGGTATCTgcaggaaaatataaaaatttaccTGAACAAAGACCCTAATACTTTTGACACGAATGATCACCATTTTCTGGAGAGTAACATGATGCATAGTATTAATGGAAAGCTGTATGCTAACCTGCATGGTTTGAAGATGCAGGAGGGAGATCGGACTGAGTGGTATTTAATGGCGCTGGGGAATGAAGAAGATATGCACACAGTACACTTTCACAGTCAGAGCTTCATATACAAGACGGATCAGCCCCATAGAGCTGATGTGTATACCTTGTTCCCTGGAACCTTTAAGACTGTTGAATTACAAGCAGGAGCTCCAGGAACATGGCTCATCCATTGCCATGTGTCAGACCACATCGACGCCGGCATGGAGACAACGCTTCACCATCGAAGCTGCAAAATCCAAAGCTTGGACAAATGgCATTGTGTTTCTGCAGTGGTTTTGCCAAATACTGCTCACCATCACGCCCGCCTTCTGGCTCCATTAACTCAGCAGAGGATGGTTTTCACTTAACCACTACCTGTGAAGTTCtatttattaagttttatttagtttttaatagttttttttttacaagtgaCACTGTACATTTAGCACTTTTTTATTAGGCTTTTCTTCTTTATAGCAGAGACTAGTTACATTATAAGACATTATGTACTGAAGAAATAGTTATCAGTGTAGTGTATCGTGCAATGAGTGGAACATCCACAATGTAAGTACTGTACTGAAAGATTTAAGACTTGACACACTTCTCAGGAGACCTACTTGGCCACATGTGCCTTCAAATTTTCAACTggtccaaaaatatttttataatgggTACAATTGCACTACtgatattttttatccattaggTTCACTTCTATGCAGAgtgtaaatggattaaatttcTTTGTGACCATCATAAACTGTcatgtcagggttttttttcggGCGGGGGGTGGGGTAGGAGGTGTCCtggttttatttacaaaagaaaatcGAAGCATGCGTGGGTTTTACAGTACAGCAAAATTCAGATCACAGAAAATTTAATTCTGTGCTTTCAAACGttattttcaacatgtttatttCCAGATCTAGTTTTAGTTAGACTGGATAACATTTTTGCTCTCTAGGATGCCCCTGCAATCATCCCCAGTCATGATGGTATCATCCCCGACTTCCCCACCTTTAGGGCACGCCTCAATGTGAAATATTCCTGCAGTGAGGTTAGTGGCAGACACAAAACTTAGACCTCCGTGCACAAACACTTACAGATTAGTTTGAATAAAACCactttttaatttcatattttcatgGTGTCATCCTTGAAGTTTCAGATGTCACCgtccaacaaaaaa
>XM_026937950.2
CTTTAGCCGTGTTTGACGCGGAGGAATTTAATTTTAGTCCCACCCAAATTCCTAGAAGTATCTAAAGGGAATATCTTTGCTTTCGGTTTCAGTTTGAGTGTATTTGAGTATTTAACTCAGGGACACCACAGACAGAGCGGTTCTTGTACAAATGGCAAGAGTTTTGACTTTTTGCTCCACGGTTCTGACTGTGTTAGGGCTGAGCCAGTCCGCCACCAGGACCTATTACATCGGGATTCGAGAGCAATACTGGAATTACGCTCCCAGTGAGAGGAATCTAATCACTGACGTTGCTATCAAGCATGACAATCCAAACCGGATTGGTAGTGTGTATAAAAAAGCTGTGTATAAACAGTACACAGATAGGACTTTCACCATCGAGGTGCCTAAACCGGAATGGCTGGGATTCCTTGGACCTGTGATCCGTGCAGAAGTGGGTGATGACATTGAGGTGCACATGAAGAACTTTGCATCTCGGCCTTATTCAATCCATCCACATGGAATCCTCTACAAGAAGGACGCTGAAGGTGCATGGTATCCGGATGGTACATCTGGTGGGAATAAGAGTGATGATGCTGTGGATACAGGACAAGTCTACACATACAGATGGAAGGTGACAGAAATGTTTGCTCCTACAGAGTCTGACTCTAAATGTCTTACATCAATGTATCACTCTCATGTAAACGCACCGAAAGACATAGCAGCAGGACTCATTGGAGTGCTGCTCATCTGCAAGAAGGGAGCTCTGGACCCAACTGGACTTCACCAATCGGGCATGCCTCATGAGTTTTTCTTGATGTTCAGTGCAGTGGATGAAAATCTTAGTTGGTATCTTGAagaaaacattaacaaattCTGCCCTGAAGCTACTCATCTGAGAGAAGATACAGAGTTTCACCATTCAAACCAGATGCACTCAATAAACGGTTTTGCTTATGGCAACTTGCCAACACTGGAAGTATGTCTCAGAAGCCCTGTGTTCTGGCATCTTTTTGGTATTGGGAATGAGATAGATCTTCACTCCattcacttccatggccacaccCTGCTCAACCAAGGTCACCGTACTGATGTCCTCAGTGTATTTCCTGCCACGTCAGTCACTGCCAAAATGGATCCCATGACAACTGGGAAGTGGTTGTTCGGGTGTCAAGTTGATGATCACATGCATGCAGGTATGCAGGGCTTTTATGAGGTCTCTTCATGTGGAAATACTGCACCCACAGTGCCCAGTGCTGGGCATGTCAGGCGTTACTACATTGCTGCAGAGGAGATACTTTGGGAATACGCCCCCTCAGGGAAAAACAGACTGACCAACAGACCACTAAATGAAAAAGACAGTGACTCTGAAGAATTCTTCAGTACAGATGATGGAAAGCTGGGAGGAAAGTACTGGAAGGTCAGATACACTGAGTACCACGATGACACCTTTACTTCCAAAATCGAGCAAAGTGGTTCAGAAAAACACCTAGGCATTCTGGGTCCTGTCATTAGGGGAGAACCTGGTGATGTCATTGAGGTGACATTTCGAAATAAGGCACGTCGTAACTTCAGTATGCAACCTCATGGCGTGTCATATGACAAAGCTTACGAAGGAGTCATATATCAGGATGGTTCTCAGAAAGCAGGGGCCAGTGTGGCACCAGGTCAGACGTTTCCATATCGTTGGCGGGTGACAGAAGGCCCCTCGCCCAGTGACCCACCCTGCCTGTCATATTTGTATTACTCCGGTACAGATCCTGTTCCTGACACCAGCTCTGGTTTGGTGGGACCGTTACAGGTGTGCAGGAAAGGAGTTCTGGATGAGAGTGGTCGACAGcatatAGGGTCGGAGGTGCAGAAAgagtttttccttcttttcactGTGATGGATGAAAACAAAAGCTGGTATCTGCAGAAGAATATTGAAGCATTTGGTAGTGATGAGTCAGACCCAGAAGACTCAGGATTTCAGGAGAGCAATAAAATGAGCTCGGTGAATGGCTTCATGTATGGAAACCTTCCTGACCTTGATTTGTGTGAGGGGGACCATGTTGTGTGGCACTTGCTGGGGTTGGGCTCAGTGAATCTCTTTGGCGTTTACTTCCAGGGCAACACGTTTCAGCTGGATACCACTACACGTgacacactcactctcttccCTCACTCCAGTGTCACCGTCTCCATGACACCTGACAATGATGGTCTTTTTGAGCTGAGCTGTCTGACAGCTTCCTACTACCGTGGTGGCATGTGGCAGCTCTACACTGTCAAACGCTGCACATCGAGTCAGAACCCTGGTTCAGAAGTTACGACCTTTCAGCCCGACGTGTATTTCTACTTGGCTGCTGAAGAAATGGAGTGGAATTATGCCCCAAACCGAACATGGGAGTTGGAGAAACTTAACACTACGCTCAACAAAAGCTCTGGAAGTGTTTACCTCACAAAATCAGAGAAATCTATTGGGTCTGTATACAGAAAGGTGGTCTACCGCAAATACAAGGATGCGACCTTCACAGAACAGGATGTCAGTGGTTCTGATGAAGAGCATTTAGGCATTCTGGGTCCCATTCTCAGGGTGCAAGTTGGTGAGAAGGTCCAGGTTGTGTTTAAGAACAATGCCACAATCCCCTATTCAGTTCACGCTCATGGAGTGAAGACCAGTAATGCTCAACCTGTTTCTCCAGgtaaCACAACAACGTATAACTGGACTATCAGTTCAGGTCCTGGACCCACTGAGTCAAATTGCAAAACCTATGCCTATTACTCATCAGTGAACTTTCTGAAGGATTTGGCGAGTGGCTTGGTCGGGCCATTGGTGGTGTGTCGTAAGGGGACTCTGAATGAAAGCAGACGGCGAAATGACGTGGATAAAGAATTTGCTCTGCTCTTCATGGTGTTTGATGAGAATGAATCGTGGTATCTgcaggaaaatataaaaatttaccTGAACAAAGACCCTAATACTTTTGACACGAATGATCACCATTTTCTGGAGAGTAACATGATGCATAGTATTAATGGAAAGCTGTATGCTAACCTGCATGGTTTGAAGATGCAGGAGGGAGATCGGACTGAGTGGTATTTAATGGCGCTGGGGAATGAAGAAGATATGCACACAGTACACTTTCACAGTCAGAGCTTCATATACAAGACGGATCAGCCCCATAGAGCTGATGTGTATACCTTGTTCCCTGGAACCTTTAAGACTGTTGAATTACAAGCAGGAGCTCCAGGAACATGGCTCATCCATTGCCATGTGTCAGACCACATCGACGCCGGCATGGAGACAACGCTTCACCATCGAAGCTGCAAAATCCAAAGCTTGGACAAATGgCATTGTGTTTCTGCAGTGGTTTTGCCAAATACTGCTCACCATCACGCCCGCCTTCTGGCTCCATTAACTCAGCAGAGGATGGTTTTCACTTAACCACTACCTGTGAAGTTCtatttattaagttttatttagtttttaatagttttttttttacaagtgaCACTGTACATTTAGCACTTTTTTATTAGGCTTTTCTTCTTTATAGCAGAGACTAGTTACATTATAAGACATTATGTACTGAAGAAATAGTTATCAGTGTAGTGTATCGTGCAATGAGTGGAACATCCACAATGTAAGTACTGTACTGAAAGATTTAAGACTTGACACACTTCTCAGGAGACCTACTTGGCCACATGTGCCTTCAAATTTTCAACTggtccaaaaatatttttataatgggTACAATTGCACTACtgatattttttatccattaggTTCACTTCTATGCAGAgtgtaaatggattaaatttcTTTGTGACCATCATAAACTGTcatgtcagggttttttttcggGCGGGGGGTGGGGTAGGAGGTGTCCtggttttatttacaaaagaaaatcGAAGCATGCGTGGGTTTTACAGTACAGCAAAATTCAGATCACAGAAAATTTAATTCTGTGCTTTCAAACGttattttcaacatgtttatttCCAGATCTAGTTTTAGTTAGACTGGATAACATTTTTGCTCTCTAGGATGCCCCTGCAATCATCCCCAGTCATGATGGTATCATCCCCGACTTCCCCACCTTTAGGGCACGCCTCAATGTGAAATATTCCTGCAGTGAGGTTAGTGGCAGACACAAAACTTAGACCTCCGTGCACAAACACTTACAGATTAGTTTGAATAAAACCactttttaatttcatattttcatgGTGTCATCCTTGAAGTTTCAGATGTCACCgtccaacaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937949.2 True 4268 mRNA 0.44 20 15398281 15414443
XM_026937950.2 False 4237 mRNA 0.44 20 15398283 15414441

Neighbor

gene id symbol gene type direction distance location
LOC113541204 LOC108256300 coding downstream 18006 15337379 ~ 15380275 (-)
LOC117595668 NA coding downstream 109516 15285508 ~ 15288765 (-)
LOC113541332 NA coding downstream 114126 15276583 ~ 15284155 (-)
LOC117595763 LOC108256304 coding downstream 123205 15273126 ~ 15275076 (-)
LOC117595804 NA coding downstream 129017 15267358 ~ 15269264 (-)
LOC113541144 cntnap2,cntnap2a,LOC108256478,LOC108256479,LOC108256453 coding upstream 2661 15417104 ~ 15559455 (-)
LOC113541101 NA coding upstream 164832 15579275 ~ 15582034 (-)
LOC113541299 cntnap2,cntnap2a,LOC108256479,LOC108256478,LOC108256453 coding upstream 362578 15777021 ~ 15899598 (-)
LOC113541324 LOC108256119 coding upstream 682538 16096981 ~ 16115913 (-)
tnfrsf11a tnfrsf11a coding upstream 710674 16125117 ~ 16140956 (-)
G332580 NA non-coding downstream 1149 15345272 ~ 15397132 (-)
G332196 NA non-coding downstream 601083 14714217 ~ 14797198 (-)
G332164 NA non-coding downstream 763355 14544032 ~ 14634926 (-)
G332147 NA non-coding downstream 833577 14537252 ~ 14564704 (-)
G332169 NA non-coding downstream 875666 14513735 ~ 14522615 (-)
G332637 NA non-coding upstream 151744 15566187 ~ 15566646 (-)
G332676 NA non-coding upstream 206063 15620506 ~ 15620717 (-)
G332682 NA non-coding upstream 215780 15630223 ~ 15630444 (-)
LOC113541266 NA non-coding upstream 521385 15935828 ~ 15943189 (-)
LOC113541293 NA non-coding upstream 564673 15979116 ~ 15985108 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 332471 14962837 ~ 15065810 (-)
LOC113541102 msc other downstream 460877 14932995 ~ 14937404 (-)
LOC113541105 NA other downstream 1635666 13757658 ~ 13762615 (-)
LOC113541288 NA other downstream 2720343 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 3401581 11944054 ~ 11996700 (-)
sec61g NA other upstream 201055 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 866828 16281271 ~ 16312916 (-)
oxsr1b oxsr1,oxsr1b other upstream 1415347 16829790 ~ 16879884 (-)
myd88 myd88 other upstream 1470708 16885151 ~ 16889424 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 1701655 17116098 ~ 17139685 (-)

Expression


Co-expression Network