si:ch73-173p19.1 (LOC108256550)


Basic Information

Item Value
gene id si:ch73-173p19.1
gene name LOC108256550
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15382986 ~ 15397527 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937952.2
TGTTAATCAGATGATCGTTGGCCCCGCCCACTGTTTACTGTCAGCGTGTTAtgattgaatcttttttttttaacaattaaaaaaataacatttattttcgTAACAAACGCTTTGGCAGCTTGACGAGGCACATTTAACAGTTATTTAATTCGGATTAAATGACGGATTCGGATTAAGCAGTTTAAAGCAGTTTTAATGGCGTCTTCAGCGACGCTCGGTGAGTTCATGCGCTGTCTCAGTGAAATGGGTTTCACTGAGCATCAGATTCAGGCTGCAGTTCAGGCTGGCTGTTTCTCTGTACCAGAAGCAGCTGAATGGATTGTGCGGGCTGGCAGTCCGAGACACACACTAATGCCACGTTCCGGACCAGTTACAAGTGCTATTGCTGCATTTAACCCTCCTAAAGATGCTCAAGGAGCTCAGACGGAGGGAAAAGgtgCTGATTTGGTGCTGCATCATCCTGCAGCAGAAACCGAACCTGTAAAGTCTCgaataaagcaaaacaatgaCTTTCTCGctcaggagagacagagagcagcagAACATGCCCGGGCCGAGAAGAGACaaaacacacaggaGCGAGAGTTAATCTTGAAAAGAATAGCAGAAGATCGCCGTGCTCAGCAGGAGAAACACACCATCACTCCAACTGTCAGTGAACGAGAGAAACCGAGTGAACGAGTGCAGAGCGGCGCAGACAGCAATTGCATTCTAATGatcCGTCTCCCCTCCGGCGAGtctttgcgtgtgtgttttccagCAGATGCTCCTCTCCGGGATGTCGTTGACCATGTCACTTCCCTCCAGCCGTCTCTTCCCTCATTCACACTTTTTCATGGTTTTCCTCGTCGGCGCTTCAGTGATGATGACATGTCACTGTCACTGCGCTGTCTCGGTTTAACACCAAACGCTGCACTCGTCCTTCAGGCCATCACTCCTCCTGATCCCTCCATCCCCGCTGCTGTCCATGATCCTGAGCCACCTCGCATTGACCCTCCtgcccagcagggggcagaTGTTTTACCACAACCTGTAGCTCCACCCCAGTTTCAACAACTACGCTGGGAAGACATGGTGCATGCTGGGATTGCTGAACCTCGTCACCGCTGggGCCGTGGACAGAGACTGGTGCCAGGAGAagaaggtgatgatgatgatgctggtgCTGATGAAGAACAGCCACTGGTAGATATTAATGCTGTACCTCGCCTTCCTTTCTTTAATGAGCTCAGAGATCAGGATCAGCATTACTGGCCGAACCAGGGAAACAGACTcggtgatccAGATGCCTCAGTAGATCCAGCAGAGGGCAGAGTTTTACCCGGTGAGGCAGCATTACAGCGTTTACAGAGAAATGATCAACAGCAACATCACCACACCGAGTCTCTGGCTCCCCACAAGAAACCCTGCAGTGTGCCCAAActtgttaccatggcaacacgcGCTGCCATCTCCCTCACCAGCGctCCTTATATGCAGTTCGTCAGCAGTTTTTCATGTTTGACCCCAGAGCTGGCTGAGCGTCTGTtgggtcacatgacctcagATCGCCTGCTGAACCCTCGAACTCTTCAGCTCTTCATTGGCTGCTCGCTTCGGAAGCTAACATTAAACAGCTACCCATACACCACCAACACACTGCTGCAGCAACTCAGCACatttacacacctcacacacctcagCTTGGTCAACTCCCCACTAATCACTGATTGTGGGCTGTCTGTGCTGTGTAAATTGGTGAAGCTGCAGTATCTGAATCTCTCGGCCTGCTCTAAACTTACTGACGGCTGTTTACACCACATGACACCTCTCAGATCCTTGTGTGTGTTGATTCTGGATCACACTAAAGTGAGTGATGCCGGTCTGCTGGTCTTCCTTCAGTCATCTCCTCCTGCACTTGTTCACCTGAGTTTAAACCAAACAGCTGTTACAGAGGAAACGCTAACtgcactgcgtgtgtgtgtaccacaGCTGCGTCTgctcagcatcacacacaccaggGTGTGTGACGTGTCTGCTCTGGCCAGTCTGCACGATCTACAGACTCTTCACCTTGACTTCACTCAGGTTAAAGAAGAATCCTTGCAGTGTCTTTCAGCGCACCGCAATCTATCATCACTCAGTCTTCACGGTGTTCCTGTCAGTAGCGGTGATCACACACTCGAGATCATCTCAGggCTGAATCTGACTCAATTAACACTTCCTGGTCGTCACTCAGTGACTGATGCTGGGCTTTTCTTCCTCTGCGCACACACTCTGCTGTCTGAACTCGACCTTAGCGACTATACGCACATTACTGACCAGGGCATCACACACTTGGGAAAACTGCCTCGGCTGAAGAAGCTTTCATTGAGTAACACTCCCCTCACTGATGCGGGCTTATCAGCTCTGTCCACTCTCACTCTGCTGATGGATGTGTGTCTAAACCGAACAGCCGTGACGAGCCGTGGAGTCACTGAGTTCATCACACGCCTGCCTTacctacaggttcTTGGTTTGTCTTGCACGCAGGTGGGAGATTCGGTACTGAAAGCTTTAATTCGTTGCACTGAACTGATCAAACTGAACCTGAGCAATACGCGCATCACCGATCGggGATTAAAGTTTCTTCACGGTATGAAACTGAGTCAGGTAAATCTGGACAGTACCGGTGTGACTGCAGGGGGCGTGGCCAACCTGATCTCCGCCTCTCCTCACCTGATCAACATCCGTGCCAATAACACGCGGCCGCTCCCTGCTGAACAACAAAGCGACGATGATGGTGGTACTGATGAAGATCGGCCATTACATTGAGACAGCTCTGAACAGGctattatgcacacacacatttcctagAGATTTTCATTACAAGCAAAGCCATTATTCAGTTGCTCTTTCTTGCTTCTGCAATTATCACATCTTAATCTTGTACTTAATAACATAGTAATAGTTTCAATAGTTTCAATCAAGAtagctttacaaataaaaaacaaataaatgcaataatgtaataatgcttttattaattaaaccaGTTAGCTTTGGTTAGCTTTGGTCTGGTTTTGGATATAACTAGGAGGCTTTGGCTGAAAGTAAGGGTTTCATCACCCAAGAAATTCAAACCCAGGTtgatttaccttttttttaatcaattttttgcattaataatgCTATTTTTGCAAAagcaaattaaagaaaataaactgtaGGGGATAATGTAAGCAGTTGTACTGATAAAATACTGGAAACATACTTATTTGCAAATTTACCAAAAGTAGTTACATATaacattttactaaataaaGTGTGTAACTACAGCGTTTATCAAtcagtcattattattattattattagtaacaatattattatgtataagtTGTGCCATATCATTCAGAATTACAAAATTAGGTAAATCAGAACAATTTTCAAGAATCAGACCAAGAATCAGTGTTTTTATGCAGTACTAAATTATTTAAGACTGTTAAGCTTGACACTGCAAAATATaactcaataaaaatatatatttttagatattgtttgtattttgtaataGTTTTGTATGAGATCATTAAAAAGATAACAAGTTATTACATATTGTAACTGTTGCTTACTGTACAGtacaaatgaatgatttttttttttttaaataccggGCATATCTCCTGAGTGATGTAGCCATCTATTCATCTAGTTTTAATCCTGCTGGGAGTACAGACACTTTAGTAAATTGAGCCTCGAGCTCAATGAAAGCAAAAGAGGCAGATTTGCACTTAAGCAGAATTTTTGATTTGTAGCTCTTTCATGTCATGCTCATGAACAATAAACTAATGTGTTCCCCCAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC103363515

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937952.2 True 3821 mRNA 0.45 17 15382986 15397527

Neighbor

gene id symbol gene type direction distance location
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding upstream 253383 15121226 ~ 15129603 (+)
trpa1b trpa1 coding upstream 272672 15084521 ~ 15110314 (+)
eya1 eya1,LOC107657823 coding upstream 534902 14796644 ~ 14848084 (+)
xkr9 xkr9 coding upstream 661409 14714795 ~ 14721577 (+)
pabpn1 pabpn1,LOC108256547,LOC107758815,LOC107589928,LOC107596039 coding upstream 805743 14565792 ~ 14577243 (+)
tpk1 tpk1 coding downstream 189775 15587302 ~ 15614891 (+)
panx1a panx1 coding downstream 222621 15620148 ~ 15629965 (+)
hephl1a LOC108256642 coding downstream 679364 16076891 ~ 16096771 (+)
LOC113541322 NA coding downstream 802969 16200496 ~ 16219013 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281,LOC107695383 coding downstream 929458 16326985 ~ 16443144 (+)
G332527 NA non-coding upstream 50554 15328614 ~ 15332432 (+)
G332348 NA non-coding upstream 180681 15201817 ~ 15202305 (+)
G332334 NA non-coding upstream 269472 15065975 ~ 15113514 (+)
G332248 NA non-coding upstream 426919 14955860 ~ 14956067 (+)
G332238 NA non-coding upstream 437774 14944991 ~ 14945212 (+)
LOC113541145 NA non-coding downstream 16345 15413872 ~ 15418923 (+)
LOC113541248 NA non-coding downstream 173336 15570863 ~ 15579798 (+)
G332650 NA non-coding downstream 194561 15592088 ~ 15617234 (+)
G332788 NA non-coding downstream 643857 16041384 ~ 16041587 (+)
G332790 LOC108272979,LOC108266882 non-coding downstream 704223 16101750 ~ 16102212 (+)
stau2 stau2,LOC107691439 other upstream 68018 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 117091 15251635 ~ 15265895 (+)
G331476 NA other upstream 2124570 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 2670308 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 3226199 12062332 ~ 12156787 (+)
G332636 NA other downstream 168648 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 1702637 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 1887555 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 2138417 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 2364004 17761531 ~ 17796521 (+)

Expression


Co-expression Network