timm21 (timm21,LOC107662560,LOC106590615)


Basic Information

Item Value
gene id timm21
gene name timm21,LOC107662560,LOC106590615
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13749291 ~ 13754357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937955.2
tcatattttaatatgcTGCTATTTTGAAAGCTAACTGTCGTGCCAATGGCGTTGTCGGTGTTTTCACACTAATATGACGAGATTTTGCGTTTTAATGAGAATGTAGAGTTTCTCTATCAACAGAattctgaaataaaagtgttttttctatTCTactttttgccaaaaaaaaattgcagcttagCAAAAGTTTCAGGCTAGCGACGCTAACTAATTAGCCGAGGACTTAGCTGCTGTGCTGAAGgacttagctagctagaattGCCGTGTAACGTTAGATATTAATAGCGGTTATAATGCTTTATTCACTCCTATTCCGATTTGGCAAAGCTTCATACTGTGCACAGATATTAAACCGTGTCAATGCCCCGTGTCCTCTGTCAGCTTTGCATCTGCATAGCCCTGGTTTGACTCGGGTAAAGAAATGTGCCAGGGCTCAGGGGGCTTGTGTGCACTATTATAGAGTTTTAAGTCAAATGAGAAATGTTCATACTGGAGCTGAGTGCAGAAATAAAGCTCAGGATcaacacagagagaaggagctGTCAGCCTCCACCAGTCAGCCTTCTTCAGGCATCTCTGCTGCACAGAAAGTGAAGCAGGCTGGCAGAGACTTCACATATCTGATCGTGGTGCTTGTTGGACTTGGAGTTACAGGAGGACTCCTGTATGTCATCTTCCAAGAGCTGTTTTCATCATCAAGTCCAAGCAAAATCTACGGCAAGGCTTTTAACAAATGCAAGTCCCACCCAGAGGTAATTGGAGCCTTTGGTGAGCCCATTAAAGGCTACGGAGAGACCACACGCCGCGGACGGAGACAGCAAGTTAGTCATGTTGAGTATATGAAGGACGGACAAAAGCACATGAGGCTGAAATTCTACATTGAGGGTTCAGAGCCTGGACTGCGTGGCACCGTGCACTCAGAATCACGAGAGaatcctGAAAGCGGAAAATACGAATTCCGTTACATATTTGTGGACGTGGACACGTATCCCAGGAGGACCATCGTCATCGAGGACAACAGATGAGAATTTTCTGCAGGATTTGTGAAAGTGCTTCACTTGCAGCATTGCCAAAGCAGCtaaaagattttgtttttttaaataatgctaaaAGAATCATATAGTTTGTCATTCAGATTGCAGAATTCAGCTGGTTTAGCTTTATGGTGCTTCAGTGATCTGATCATGATCAGATGATTTGAGGTTTGCTGATTCAATTgctcattcaattcaattaaatgtaAGGAAGAAGCTGAAATTTTGGGAAACATATAGAACACACTTTTGGATAACAAAAAAAGGTAATGTATAGCACTTATgacattttggaaataaaataatgtgtgcaTATGTCTTTATGAAGTCTGACTTGCTGTTAACAGAACTTTGATAGGAAATATTTCTTAAACCTCTGAAAATCAGGAACTGTGatccagcagggggcagtatTGCACAATCATTTCAATATTCAAAGATTCAAGTAGCTTTATTGGGCTGGTAAAAGGCTTTATGCTGCCAAAGCACTGGTAACCTTAAATTACAGtcatacacatttacagaagTTCAATAAAGTAAGAGCAataagaagggaaaaaaatatagacaatgatttgttttattaccCAAATGTTACATGTCAAACTGAGCATGTTGTGCATGTTcacagtgttggtgttattgtgtgGTTGATGCTCCTGTTCCACTGCTTACACTTTTGTCgtgactgggtttcacaaagCTGGCAGCCAGGTTTGAGCTCGTTGAGGTTTCTCCTAGCAGGTGTGGGAGTTTGTTCTTGTCTGGCATCAGATTGAAGGCTTTTTCATGGGTTGTGAAGTGGAGAAAACATGTTTCCTTAATTTGTGAATAATTAGGGCATGTTGTTAAAAAGTGCAGTGCACTATGAAGTGCACTTCATTTTGTGTGCAGTGGGGGCACAGCCTGTCTTCTTTTGGTAGCCaggtctgtctgtgtctgcccGTCTCTATGGCGAGGTTGTGATCACTGAGTCTGGACATGGTCAGGACTTTTCTTAGTTTGGGGTCGGACACCGTGCTCAGGTATTCTGCCAGTTTATATTCTCTGTTTAGGGACAGGTAACATTGGAATTTACTTTGTTGAGCTGTTGCTTCTGTCCATCATtttagatatgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaataatttgatttgGTCTGTCTGAGGTTTTGTTCTGGAGTTTGGCTGGACATGTTTTGGATTTCTCTGTTATGAACAATAAAGCTATAAATCGATACATTCA

Function

symbol description
timm21 Involved in mitochondrial cytochrome c oxidase assembly; mitochondrial respiratory chain complex I assembly; and protein import into mitochondrial matrix. Part of TIM23 mitochondrial import inner membrane translocase complex.

NR:

description
mitochondrial import inner membrane translocase subunit Tim21

GO:

id name namespace
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component

KEGG:

id description
K17796 TIM21; mitochondrial import inner membrane translocase subunit TIM21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937955.2 True 2286 mRNA 0.41 6 13749291 13754357

Neighbor

gene id symbol gene type direction distance location
sema5a sema5a,LOC108426609,LOC106578437 coding downstream 31176 13509875 ~ 13718115 (-)
cct5 cct5,LOC107686714,LOC107695377 coding downstream 343214 13397268 ~ 13406077 (-)
eif2s3 eif2s3,if2g,LOC106590489,LOC107741782 coding downstream 377248 13361369 ~ 13372043 (-)
zfx LOC108256485,LOC108439659 coding downstream 389194 13351341 ~ 13360097 (-)
pip4k2aa pip4k2a,pip4k2aa,LOC107686705,LOC107695407,LOC107741799,LOC107549201,LOC107595124,LOC107727230 coding downstream 429852 13287330 ~ 13319439 (-)
neto1l neto1 coding upstream 11502 13765859 ~ 13867147 (-)
fbxo15 fbxo15 coding upstream 200200 13954557 ~ 13968352 (-)
LOC113541290 socs6,LOC107689432,LOC107596044,LOC107727394 coding upstream 462781 14217138 ~ 14223311 (-)
dok6 dok6,LOC107657792,LOC107596042,LOC107741641,LOC107589921,LOC107689434,LOC107727392 coding upstream 558725 14313082 ~ 14373453 (-)
pi15a pi15a,LOC108256124,LOC107758808,LOC107589991,LOC107657806,LOC107689437,LOC107706855 coding upstream 665537 14419894 ~ 14429370 (-)
G331569 mtrr non-coding downstream 335480 13412902 ~ 13413811 (-)
G331568 NA non-coding downstream 341833 13406386 ~ 13407458 (-)
G331565 NA non-coding downstream 366856 13380609 ~ 13382435 (-)
G331560 c8g non-coding downstream 401434 13343614 ~ 13347857 (-)
G331546 NA non-coding downstream 469905 13278136 ~ 13279386 (-)
G332056 NA non-coding upstream 712037 14466394 ~ 14466613 (-)
G332169 NA non-coding upstream 759378 14513735 ~ 14522615 (-)
G332147 NA non-coding upstream 782895 14537252 ~ 14564704 (-)
G332164 NA non-coding upstream 789675 14544032 ~ 14634926 (-)
G332196 NA non-coding upstream 959860 14714217 ~ 14797198 (-)
LOC113541288 NA other downstream 1071353 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 1752591 11944054 ~ 11996700 (-)
G330379 NA other downstream 2666140 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 2818516 10923126 ~ 10930775 (-)
G330185 NA other downstream 3226028 10522732 ~ 10523263 (-)
LOC113541105 NA other upstream 3301 13757658 ~ 13762615 (-)
LOC113541102 msc other upstream 1178638 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 1208480 14962837 ~ 15065810 (-)
sec61g NA other upstream 1861141 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 2526914 16281271 ~ 16312916 (-)

Expression


Co-expression Network