wasf3b (wasf3,wasf3b,LOC107705209,LOC107716409,LOC107584970,LOC107654222,LOC107701678)


Basic Information

Item Value
gene id wasf3b
gene name wasf3,wasf3b,LOC107705209,LOC107716409,LOC107584970,LOC107654222,LOC107701678
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17504889 ~ 17519966 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937956.2
CCCGCCCCGGAGCGGATTGTTTGGAGCGGTCACAGGGGCTGATGGTGGACAGAGCAGGATGGCAGCCGGACTCAGGGACATGTGTGAGAACTGAAGTGTTTGGAAATCCAGTTTAGGCTGAGTGTGGCGAGGGAGAGCCATGCCGCTGTTGAAGAGGAACATCGAGCCCCGGCACCTGTGCCGTGGTGCGCTGCCTGAGGGCATCGGTAGTGAGCTGGAGTGTGTAATGAACAACACACTCTCTGCCATCATCCGCCAGCTCAGCAGTCtcaGTAAGCATGCAGAGGACATATTCGGCGAGCTGTTTCGCGAGGCCAACGCGTTTTATCTGCGAGCGAACTCCCTGCAGGATCGCATCGATCGGCTCGCCGTCAAGGTCACTCAGCTGGACTCCACTGTGGAGGAGGtctctCTGCAGGACATTAACATGAGGAAGGCCTTTAAGAGCTCTACAGTACAGGACCAGCAGGTGGTGTCCAAGAGCAGCGTCCCAATCCCTGTGAAAGAGATGCACGAGCTGAGTGACCCACCTCCCCCCCTCAACATCCTCTCGCCCTACAGGGACGATAATAAGGATGGGCTGAAATTTTACACGGACCCCTCGTACTTCTTTGACCTTTGGAAGGAGAAAATGCTGCAGGACACGGAGGacaagaggaaagagaaaagacgGCAGAAGGAGCAGAGGCGCTGTGTGGATGGCACGCTGCAGAGAGAGGTGAAGAAGGTGCGAAAGGCGCGTAACCGGCGTCAGGAGTGGAACATGATGGCCTTCGATAAGGAACTGAGGCCTGACCTGCGACACGGGCACATGCTGCACAGAGGAGGATCATCTGAGGGCTCCATGTCACCAGAAAACAGaTCTCATGGCCAAGACCACCTGGACCATGGCTATCTGACCATGTCCAACCATgcaggccacgcccacacgtACTCTGGCCCTCCCCCCAGCATGGCGGCCCTCTCGGCTCACGCCCACATGGGCATGGAGCAGGACTACAGGACGGGGGCTATGGCGTACCGCTCGGGCACACTGGGGCGTCCACACCAGGCCCCGCCCCCTCCTCCATCCATAGAATGCATGAACGGCTCCACGCCCCTCCCACCAATGGACTACAGTATGGATTACATGAACTCAGCCCCTCCCCCTCCAGCCCCAGCTCCTCTCATTCCATCATCTCAAACTGCCTTCGCTATGCCACCCATGGGCCCGCCTCCAGGCCCGCCCACTGTAGGCGCAGGTTACCTCCTGCCTGCTTCACCTGCCTCTGGACCATTggctgctcctcctccaccagggcctccacctcctccacccaGCACCACCCAACCCATCACACCCAAACGGCCACCCGTGCCCACTGAAGCCCCGCCCATGAACGATGCCCGCAGCGACCTGCTAGCAGCCATACGCATGGGTATCCAGCtgaagaaggtgcaggagcagcaggagcagcaggcAAAGCGGGAGCCGGTGGGGAACGACGTGGCCACCATTCTGTCCCGCCGCATAGCCGTGGAGTACAGCGACTCCGAGGATGACTCTGAGTTAGAGGATAATGACTGGTCTgactagaaacacacacacacacacacacacacactcacacttcctTTTGCCGTAACACTGCAGTACCTACAGTACAGAGATGTGCAGAAGCTCTCAAAAGTTTCATCAAAAGGCTTAGTCTCGAAAGTTGTTTCTAAGACAAGTATAAATTaatcactgattttattttcgAAAAACACACAGCTAGGTTTCTATCcgatttaaaagaaattttatttaGAAGAAAAAGCTGTCGAGTGACTTCAAAACTTAAAGACTCGACTGCTCAAGAAGCTGACAGGCTGAATTTTCTGTGCCTTCATACTGATAactatttgtaaaataatgcaGGTTAatgttagagttagagttagggttaacattcaaaaaaaaatttaaaaatgaattcacATGTAATTCATCTAAATCAACCACATCACTCTTGTTCTTTTGAATTCATTTTCCATGAGATCAGGTTTGTTCAGAGCTGACATCAAGTCTGCTTTAAAGAATCGAAACTAtgagttttgatttatttaactttttttttgatcaCTGCAAAAAATCTATACAGATTAGTTCATTTCTCATTATTCTAGAATGTGGGAAATGGTAAAATAAATTACCTGAAGCAGCGattaaggggtccaagcactatgCCGTGGACTGGCGATGCTCAATGCATGacttgaaatgatgaaataattcaCTGGATACACTTTTCCACTTTGTGTAAGAATGAAGTCAAGTTCTTTTCAGATAAAAGAAGATTTCTGGACATATGTCTGTTCCGTAAAGTTGATGGAGGATGTTTCTGGTAATTATGATCAGTTTGCGTGGGTTAAGTGATTTCTGTATAAATCAGAGATGGGAGTGTCTTCATGATGTATTCATCAGTCATCACACCAAAAATTCCGTATGTATACATAAACCTCctcattttaaaacagattGTTTTAACCTGTTGCTTCGGACACGTCCTCTTAAACATtgtctgtattttattgttctgtgttttaaactcaCTTGGTTTGGTTCCAGCGGGAGATGATTGAAAAGAGCGAGCTCTTCCTCGAGTGTCTTTATGCTggagaaaaagtgcaaaacctcttttcccacaggatataacaATGTTTACCAACACGTCAATTCAGACGAGATAAATATTACCTGGTTATTTctactggtcattttatagaaggtgAAATCTGGTGTATTCTTTCCAGATACGTATACAAAGTAATAGTAAAATAATGGAGTAATGTAGAATGATTTGGACAGTTTTTGCACGTAATGATGGTGATAGTGTAAAACATCGCTGCCAAGatattgcttaaaaaaatgtacatgaaaTATCTTTGGCTACTGAATAAGAAGAAATTGGAATAATGATTCTGTGACAAAAGTATTTGGAAGAAATATTCAAAGTATGTTCAACTTTGGCTTGTTTgccacctttggtgcttggacccctaataaaatatggtgtgtccaaacttttgactggttcTGTGCGATCAAACCCACAATATGATGCTCATCCAGCTGTTTATTTAGATATTAGAtttagtaaaaataatttttttctttaggtaAAAGCAGCTGAGAGTCAAACTTTGTTTGTGATTGTAATAAACTGACAAAATTATCAAAATTGTCAAGTGAACAGGCGAGATGGTTCGGTTAAATAGACAAACACACCACTGAGAGATTATAGCTATGCATGATGCAGGCCTGGAGGTCACATGACCTGGACATCCCTTAAGAGAGCTGAAGAAAATCTAAGGAGTCACGGTGACGGCTGTGCAAACTCTGCTCTTGTGACAACGACTAAAATGAATCATCTGCTCCAGGACCCGTCGAGCCCTCATCATGGAAACGGGTTCTTGGGGGACTGGCGTCTCTATGGAAACAGTACAGCTGGGATGCAGATCTCCATGGCAACCATGGAGCCTAGGTAGCGAGCGGATGAAATAAAACAAGCGCAGGCCGGGATATTTTTAATGCACAGCACATtcttttaatacaaaaattaacAAGAATCTCTCGATTTTAAACTAACCAAAGCAATAAAAAGAGAGCACTAACACCTTGGAAAAATA
>XM_034298074.1
AGGGGCTGATGGTGGACAGAGCAGGATGGCAGCCGGACTCAGGGACATGTGTGAGAACTGAAGTGTTTGGAAATCCAGTTTAGGAAGCCAGAGATGGGACACACAGAGGAACAGGAAGCTGCAGCCTGGGTGGGGAGGTGcaaaacaggaagcaggaagGCTGAGTGTGGCGAGGGAGAGCCATGCCGCTGTTGAAGAGGAACATCGAGCCCCGGCACCTGTGCCGTGGTGCGCTGCCTGAGGGCATCGGTAGTGAGCTGGAGTGTGTAATGAACAACACACTCTCTGCCATCATCCGCCAGCTCAGCAGTCtcaGTAAGCATGCAGAGGACATATTCGGCGAGCTGTTTCGCGAGGCCAACGCGTTTTATCTGCGAGCGAACTCCCTGCAGGATCGCATCGATCGGCTCGCCGTCAAGGTCACTCAGCTGGACTCCACTGTGGAGGAGGtctctCTGCAGGACATTAACATGAGGAAGGCCTTTAAGAGCTCTACAGTACAGGACCAGCAGGTGGTGTCCAAGAGCAGCGTCCCAATCCCTGTGAAAGAGATGCACGAGCTGAGTGACCCACCTCCCCCCCTCAACATCCTCTCGCCCTACAGGGACGATAATAAGGATGGGCTGAAATTTTACACGGACCCCTCGTACTTCTTTGACCTTTGGAAGGAGAAAATGCTGCAGGACACGGAGGacaagaggaaagagaaaagacgGCAGAAGGAGCAGAGGCGCTGTGTGGATGGCACGCTGCAGAGAGAGGTGAAGAAGGTGCGAAAGGCGCGTAACCGGCGTCAGGAGTGGAACATGATGGCCTTCGATAAGGAACTGAGGCCTGACCTGCGACACGGGCACATGCTGCACAGAGGAGGATCATCTGAGGGCTCCATGTCACCAGAAAACAGaTCTCATGGCCAAGACCACCTGGACCATGGCTATCTGACCATGTCCAACCATgcaggccacgcccacacgtACTCTGGCCCTCCCCCCAGCATGGCGGCCCTCTCGGCTCACGCCCACATGGGCATGGAGCAGGACTACAGGACGGGGGCTATGGCGTACCGCTCGGGCACACTGGGGCGTCCACACCAGGCCCCGCCCCCTCCTCCATCCATAGAATGCATGAACGGCTCCACGCCCCTCCCACCAATGGACTACAGTATGGATTACATGAACTCAGCCCCTCCCCCTCCAGCCCCAGCTCCTCTCATTCCATCATCTCAAACTGCCTTCGCTATGCCACCCATGGGCCCGCCTCCAGGCCCGCCCACTGTAGGCGCAGGTTACCTCCTGCCTGCTTCACCTGCCTCTGGACCATTggctgctcctcctccaccagggcctccacctcctccacccaGCACCACCCAACCCATCACACCCAAACGGCCACCCGTGCCCACTGAAGCCCCGCCCATGAACGATGCCCGCAGCGACCTGCTAGCAGCCATACGCATGGGTATCCAGCtgaagaaggtgcaggagcagcaggagcagcaggcAAAGCGGGAGCCGGTGGGGAACGACGTGGCCACCATTCTGTCCCGCCGCATAGCCGTGGAGTACAGCGACTCCGAGGATGACTCTGAGTTAGAGGATAATGACTGGTCTgactag

Function

symbol description
wasf3b Predicted to enable Arp2/3 complex binding activity and protein kinase A regulatory subunit binding activity. Predicted to be involved in actin cytoskeleton organization and positive regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Predicted to be active in lamellipodium. Orthologous to human WASF3 (WASP family member 3).
wasf3 Predicted to enable Arp2/3 complex binding activity and protein kinase A regulatory subunit binding activity. Involved in cytoskeleton organization and regulation of cell shape. Located in extracellular exosome.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K06083 WASF3; WAS protein family, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937956.2 True 3651 mRNA 0.46 9 17504889 17519966
XM_034298074.1 False 1619 mRNA 0.59 10 17506964 17519933

Neighbor

gene id symbol gene type direction distance location
rpl21 rpl21,LOC107591224,LOC107701647,LOC107585018 coding downstream 21679 17479340 ~ 17483210 (-)
gtf3ab LOC100305039 coding downstream 34212 17467758 ~ 17470677 (-)
si:ch211-140b10.6 polr1d coding downstream 54465 17446518 ~ 17450424 (-)
pdx1 pdx1,LOC107580123 coding downstream 64379 17435073 ~ 17440510 (-)
gramd1c gramd1c coding downstream 88933 17400360 ~ 17415956 (-)
cdk8 cdk8,LOC107732894,LOC107701677 coding upstream 1817 17521783 ~ 17535395 (-)
LOC113541063 shisa2 coding upstream 93338 17613304 ~ 17619370 (-)
LOC113541192 LOC108256613 coding upstream 109507 17629473 ~ 17636380 (-)
LOC113541196 usf3 coding upstream 187026 17706992 ~ 17719256 (-)
naa50 naa50,LOC106579447 coding upstream 200139 17720105 ~ 17726408 (-)
G333657 NA non-coding downstream 114776 17389862 ~ 17390113 (-)
G333656 NA non-coding downstream 115148 17389454 ~ 17389741 (-)
G333653 ccdc191 non-coding downstream 119243 17385279 ~ 17385646 (-)
G333652 NA non-coding downstream 120866 17383742 ~ 17384023 (-)
G333650 ccdc191 non-coding downstream 123653 17380855 ~ 17381236 (-)
G333700 NA non-coding upstream 21880 17541846 ~ 17542352 (-)
G333932 NA non-coding upstream 379873 17899839 ~ 17902383 (-)
G333934 NA non-coding upstream 382667 17902633 ~ 17902855 (-)
G333939 NA non-coding upstream 385942 17905908 ~ 17906806 (-)
G333971 NA non-coding upstream 404525 17924491 ~ 17924789 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 265773 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 365204 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 615465 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 625005 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 1191973 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 387618 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 389358 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 396118 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 917548 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1485532 19005498 ~ 19015855 (-)

Expression


Co-expression Network