vps41 (vps41,LOC107722032,LOC107558337,LOC107748298)


Basic Information

Item Value
gene id vps41
gene name vps41,LOC107722032,LOC107558337,LOC107748298
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 11900755 ~ 11943508 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937978.2
TGGTCATGTGACTGTTCTTATGATCAGTGTTAACAGCTCCAGGAACATCACTGCAGCTGAGGAGTTAATGCTACATTAATTGCTGTAAATCGCTGTAGTTGTTCAGAaccgctgcagtggctgagctccTCTGTCTTTTTATTAAGCTCAGTGAACCGACGCGTTTCTTCGCTGTCTTTTTGGATGAATTAACGGCTGTGGCTAGCTGTTAGCAGTGAGCTATGTCGGAAGTGGAGGAGCAGGGAAAGAAACCTAGTGAGGAGTCCACAGATGACTCAGAGGAAGAAGACAGTGAGGAGGAACCTAAATTGAAATATGAGCGATTGGCCAATGGGGTGACGGAGATTCTGCAGAAGGATGCGGCCAGCTGCTTGACCGTACATGACAAGTTTCTGGCCCTGGGGACTCACTTTGGGAAGGTCTTCCTTCTCGATGTCCAAGGAAACGTCACCCAGAAGTATGAAATTAGTTCGGTGAAGATAAATCAGATCAGTCTGGATGAGAGCGGAGAGCATGTGGGGATCTGCTCAGAGGATGGAAAGGTGCAAGTGTTTGGTCTCTACACCAGAGAGGGCTTCCATGAGAACTTTGACTGTCCTATTAAAGTGGTGGCTTTACATCCTCAGTTCAGCAAGTCAAACAACAAGCAGTTTGTAACTGGAGGAAACAAGTTGCTACTGTATGAGAGAAACTGGCTGAACCGCTGGAAGACGTCCGTTCTGCATGAGGGAGAGGGAACCATCACCAACGTCAAGTGGAGGGCCAATCTCATCGCCTGGGCTAACAACGTGGGGGTGAAGATCTATGACATCAGCAGTAAGCAACGAATCACCAATGTGTTACGGGACAACTCCAGCTTGAGGCCTGACATGTACCCCTGTAGCCTTTGCTGGAAAGATAACACCACACTTATTATTGGCTGGGGAACTTCAGTTAAGatTTGTGTTGTCAAGGAACGCGACCCTTCAGAAATGAGAGATTTACCTAGTCGCTATGTCGAGATTGTGTCAGCATTTGAGACGGAGTTTTTCATCAGCGGACTGGCCCCTTTGGCAGATCAGCTCGTCACTCTTTACTTTGTTAAAGAGAATTCTGAGCATATGGAGGAGGAGTTCCGGTCACGTCCACGTTTAGACATCATCCAGCCTTTGCCCGAGAGCTGTGAGGAGATCTCGTCAGATGCTTTGACTGTCCGCAACTTTCAGGAAAATGAATGCCGGGACTACAGACTGGAGCACTCGGAGGGAGAGTCTCTGTTCTACATCATAAGCCCTAAAGACATTGTAGTGGCTAAAGAACGAGACCAGGATGACCACATCGACTGGCTGCTCGACAAGAAGAAATATGAGGAGGCACTAATGGCAGCAGAGATCAGCTTCAAGAATATCAAAAGGCATGATGTTCAGaaAATCGGGATGGCCTACATCAATCACCTGGTGGAGAAAGGGGACTATGATGCTGCAGCAAGaaaatgtcagaaagtTCTAGGAAAAAATATGGACCTATGGGAGAATGAGGTGTACAGGTTCAAAACTATTGGACAACTGAAGTCCATCAGTCAGTACTTACCCAGAGGAGATCTGCGCCTCAGACCTGCCATTTATGAGATGATCCTGCATGAATTCCTCAAGACTGACTAtgatGGTTTTGCCACACTGATCCGAGAGTGGCCAGGAGAGCTCTACAACAACATGACTATAGTTCAGGCAGTGACAGACCACCTAAGAAAGGACCCTACCAACAGCATCTTGCTCACTACATTGGCTGAATTATACACATATGACCAGCGCTATGACCGAGCTCTGGAGATCTACCTAAAGCTGAGACACAAAGACGTCTACCAGCTTATCCACAAACACAACCTCTTCTCTTCCATTGAGGATAAAATTGTCCTCCTCATGGACTTTGACAAGGAGAAAGCTGTTGACATGCTGCTGGATAATGAAGATAAAATATCTGTGGACAGAGTAGTTGAAGAGCTGAAAGACAGACCTGAGCTGTTGCATGTGTACCTGCACAAGCTGTTTAAGCGAGATCACCACAAGGGCCAGAGATATCACGAGAAGCAGATCAGTCTTTATGCTGAGTACGACCGGTCCAACCTTCTACCTTTCCTCAGAGACAGCACTCACTGCCCACTGGAGAAGGCCCTGGAGATTTGCCAGCAGAGACACTTTGTGGAGGAAACAGTCTTTCTACTCAGTCGTATGGGGAACTGTAGGCGGGCGTTGCAGATGATCATGGAGGAGCTGGAAGATGTGGATAAAGCCATCGAGTTTGCCAAAGAGCAGGATGATGTTGAACTGTGGGAGGATCTCATCTCTTACTCCATAGATAAACCGCcCTTCATCACTGGCCTCCTGAACAACATAGGAACCCATGTGGACCCCATTCTCCTAATCCAGCGCATTAAAGAAGGCATGGAGATCCCAAACCTCAGAGACTCACTCGTCAAAATCCTGCAGGATTACAATCTACAGATTTTATTGCGAGAGGGCTGTAAGAAGATCCTGGTAGCAGATTCGCTCTCCCTGCTGCAAAAGATGCACAGAACACAGATGAGAGGCGTTCGAGTGGACGAGGAGAACATCTGTGAAGCATGTCATGTCACAATATTACCATCAGACACGGCTCAGCCCTTCAGTGTAGTGGTCTTCCACTGCAGGCATATGTTCCATAAAGAGTGTCTCCCCTCAGCAGGAACAATGCCAGGTGGACAGTACTGCAACATCTGCAGTGCCAAGCGAAGAGGCCCAGGCAGCGGCATTCTGGAGATAAAGAAATAGTGTCCTTCTACCTAGTGACTCCTTACATACATACTGCAGTctatcattttgttttgcaagtcttggtaaaaaaaatgaagtctgGTTAACTGAGTCTCTATTGGCACATACTATttaagaatcttttttttttttacatttttgtgtgcAGAATTGTAAGGCActtggtaatttttttttgcaaggctTATAAATTGTTCCATTTGGCATGTAAGTAATTTGTACACTTGTATTTAGTTTTCAGTgaagcagaaaaagaagaatatgtGCAGGAGCTCACCAGTGGGTGGATGATCATCTATGTGGCTATAAGAAGCCACATATTATAAGGCCAGGCAAAGTTATCAGTAGTTTGGCCTTTTTCTCTCACAATAAATTTAATCAATATTGCACTGTG

Function

symbol description
vps41 Predicted to enable metal ion binding activity. Predicted to be involved in several processes, including cellular response to starvation; endosomal vesicle fusion; and protein targeting to vacuole. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and lysosome. Predicted to be part of HOPS complex. Predicted to be active in late endosome. Orthologous to human VPS41 (VPS41 subunit of HOPS complex).

NR:

description
vacuolar protein sorting-associated protein 41 homolog

GO: NA

KEGG:

id description
K20184 VPS41; vacuolar protein sorting-associated protein 41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937978.2 True 3183 mRNA 0.46 29 11900755 11943508

Neighbor

gene id symbol gene type direction distance location
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding upstream 347538 11488916 ~ 11553217 (+)
asap1b LOC108256502,LOC108256646,LOC108434233 coding upstream 414450 11391309 ~ 11486305 (+)
LOC113541334 LOC108256505 coding upstream 517949 11378301 ~ 11382806 (+)
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding upstream 526250 11370263 ~ 11374505 (+)
myrip myrip,LOC107724561 coding upstream 592143 11122395 ~ 11308612 (+)
LOC113541340 LOC108256745,LOC108434245 coding downstream 218947 12162455 ~ 12179621 (+)
bcl2a bcl2 coding downstream 238277 12181785 ~ 12234183 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding downstream 484949 12428457 ~ 12499046 (+)
LOC113541349 LOC108256200 coding downstream 763431 12706939 ~ 12708003 (+)
ccl34b.4 LOC100304628 coding downstream 767118 12710626 ~ 12712651 (+)
G330908 NA non-coding upstream 4864 11895666 ~ 11895891 (+)
G330869 NA non-coding upstream 26563 11873992 ~ 11874192 (+)
G330856 NA non-coding upstream 74365 11826139 ~ 11826390 (+)
G330616 NA non-coding upstream 517093 11383436 ~ 11383662 (+)
G330457 NA non-coding upstream 545754 11354620 ~ 11355001 (+)
G330911 cdv3 non-coding downstream 522 11944030 ~ 11946238 (+)
G330962 NA non-coding downstream 81068 12024576 ~ 12034059 (+)
G330976 NA non-coding downstream 198435 12141943 ~ 12142865 (+)
G331003 NA non-coding downstream 267742 12211250 ~ 12273290 (+)
G331161 NA non-coding downstream 505254 12448762 ~ 12450347 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 152196 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 916546 10874209 ~ 10984209 (+)
G330257 NA other upstream 925840 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 1132395 10595130 ~ 10768360 (+)
G330038 NA other upstream 1467891 10431333 ~ 10432864 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other downstream 118824 12062332 ~ 12156787 (+)
G331263 LOC108256200,LOC100304628 other downstream 763431 12706939 ~ 12712678 (+)
G331476 NA other downstream 1314386 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 3190845 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 3308127 15251635 ~ 15265895 (+)

Expression


Co-expression Network