pabpn1 (pabpn1,LOC108256547,LOC107758815,LOC107589928,LOC107596039)


Basic Information

Item Value
gene id pabpn1
gene name pabpn1,LOC108256547,LOC107758815,LOC107589928,LOC107596039
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14565792 ~ 14577243 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937980.2
AGTGACCTAACGCCCCGCCCATGGCTTCCATTTCTGTTCTGGATCACACGGCGCAAAGCGAATAATACACATTTGGGTTTTTTCCTGAATAATATTGATGTGACTGATAATTATAGCGAACACAAGTCCTTCCTGGTCACGGCACGACAGAGAGTTTAGCTGGTCTAGCGAGTAGCAGTGAGTTATTTCTGGGAAGTGGTAAAGGTTTGAGTCTTTTGTACAGGAGACGGGCctctttattcctctttttaACTTTAGCGGCGTATTTTCCGCcgttttttttccaccttctGCCCCTCGCGCTCTCCCAGCGGCGTGAGTAGAAGCACGAGGCGCGCGCGGAGTGGCGGGAATCGGGCCGATGGCGGAGTTCGGTAACGGACTGGCGGAGGAATCTCTGCTCGACTCAGACCCCGGTCATCCGGAGCTGGAAGATCCGGGTGTTGGTGACGAAGAGCCGGGTTTAGATGAGGGAGAGGCCGCTATTGAAGACCCGGAGCTGGAGGCCATTAAAGCCCgggtgagagagatggaggaggaagCAGAGAAACTGAAGGAGCTCCAGAACGAAGTGGAGAAACAGATGAACCTTAGTCCTCCTCctgCTGGTCCTGTCATCATGTCCATTGAAGAGAAGATAGAAGCAGATGGAAGATCAATTTATGTTGGAAATGTGGATTATGGAGCAACAGCAGAGGAGCTTGAAGCTCATTTTCATGGCTGTGGCTCTGTTAACAGAGTCACTATCCTGTGTGACAAATTCACAGGACACCCGAAAGGGTTTGCATATATTGAGTTTGCAGACAAGGAATCTGTTAGAACAGCAATGGCACTGGATGAGTCCTTATTCCGTGGAAGGCAGATAAAGGTTGGGGCAAAGAGAACGAATCGACCCGGTATCAGCACCACAGACCGCGGGTTTCCTCGGGCCCGGTTCCGCTCACGTGGAGGAAGTTTCTCGTCTCGGGCTCGGTATTACAGTGGATACACACCACCCAGAGGAAGAGGACGGGCCTTCAGGTTTCAGGACCAGTGGAGGCTGAGTACTCCTCCTCCCCCTGTGGCTGCAGCGCCCCCTACAGTCTCACCatcgtctctttctctctctgctccctctatccctctatccACACTCatgtgggggggtgggggtggggcaCAGGGTGACCCCCGGCCCATTTACTACAACAACAAACGCTGAACACACGCACTCTCTcacatgcactaacacacacacatatatacacacacacatacacacaccccaccACATATTTATATAGCGAGAGCAAAGCAGCTTGTTAAAGTGGGAGAGAATGAGACGGTGAGGACAAGAACAGGTTAAAGGTTAAAAGGGAGGGATGCATTTCTAGGGCCCTAGAGGACCGATCCTGGGAATTTAAGGCTATTTAAGAAGGAAAGGAGCAAAGCTTTTATTTGTTGGGAGGGGGGTTGTGtggagaggttttttttttcccttgggtttttttttgttttgttttttgttttgagacGGGGAAGTGGGTttggggggag
>XM_026937981.2
GTGACCTAACGCCCCGCCCATGGCTTCCATTTCTGTTCTGGATCACACGGCGCAAAGCGAATAATACACATTTGGGTTTTTTCCTGAATAATATTGATGTGACTGATAATTATAGCGAACACAAGTCCTTCCTGGTCACGGCACGACAGAGAGTTTAGCTGGTCTAGCGAGTAGCAGTGAGTTATTTCTGGGAAGTGGTAAAGGTTTGAGTCTTTTGTACAGGAGACGGGCctctttattcctctttttaACTTTAGCGGCGTATTTTCCGCcgttttttttccaccttctGCCCCTCGCGCTCTCCCAGCGGCGTGAGTAGAAGCACGAGGCGCGCGCGGAGTGGCGGGAATCGGGCCGATGGCGGAGTTCGGTAACGGACTGGCGGAGGAATCTCTGCTCGACTCAGACCCCGGTCATCCGGAGCTGGAAGATCCGGGTGTTGGTGACGAAGAGCCGGGTTTAGATGAGGGAGAGGCCGCTATTGAAGACCCGGAGCTGGAGGCCATTAAAGCCCgggtgagagagatggaggaggaagCAGAGAAACTGAAGGAGCTCCAGAACGAAGTGGAGAAACAGATGAACCTTAGTCCTCCTCctgCTGGTCCTGTCATCATGTCCATTGAAGAGAAGATAGAAGCAGATGGAAGATCAATTTATGTTGGAAATGTGGATTATGGAGCAACAGCAGAGGAGCTTGAAGCTCATTTTCATGGCTGTGGCTCTGTTAACAGAGTCACTATCCTGTGTGACAAATTCACAGGACACCCGAAAGGGTTTGCATATATTGAGTTTGCAGACAAGGAATCTGTTAGAACAGCAATGGCACTGGATGAGTCCTTATTCCGTGGAAGGCAGATAAAGGTTGGGGCAAAGAGAACGAATCGACCCGGTATCAGCACCACAGACCGCGGGTTTCCTCGGGCCCGGTTCCGCTCACGTGGAGGAAGTTTCTCGTCTCGGGCTCGGTATTACAGTGGATACACACCACCCAGAGGAAGAGGACGGGCCTTCAGgGGCCGAGGGCGATCAACATCGTGGTATTCCCCTTACTAATAACTCCCCACTGTCATTTCCCCTTTTTACTGTCATCCCTCCTTtccctgtttaaaaaaaaaaaaaa
>XM_026937982.2
ttggttggtggggggagaaaaaaaaacgttcgTCGCAAAAAATGCGAGAGGGGGTTAACGTTAGAGGGTAGGACAGGCCGCCATTAACGCCGCTGCTGTCTGCAGAGAGGCGAAAAGCTCACGGAGCTGGAGGCCATTAAAGCCCgggtgagagagatggaggaggaagCAGAGAAACTGAAGGAGCTCCAGAACGAAGTGGAGAAACAGATGAACCTTAGTCCTCCTCctgCTGGTCCTGTCATCATGTCCATTGAAGAGAAGATAGAAGCAGATGGAAGATCAATTTATGTTGGAAATGTGGATTATGGAGCAACAGCAGAGGAGCTTGAAGCTCATTTTCATGGCTGTGGCTCTGTTAACAGAGTCACTATCCTGTGTGACAAATTCACAGGACACCCGAAAGGGTTTGCATATATTGAGTTTGCAGACAAGGAATCTGTTAGAACAGCAATGGCACTGGATGAGTCCTTATTCCGTGGAAGGCAGATAAAGGTTGGGGCAAAGAGAACGAATCGACCCGGTATCAGCACCACAGACCGCGGGTTTCCTCGGGCCCGGTTCCGCTCACGTGGAGGAAGTTTCTCGTCTCGGGCTCGGTATTACAGTGGATACACACCACCCAGAGGAAGAGGACGGGCCTTCAGGTTTCAGGACCAGTGGAGGCTGAGTACTCCTCCTCCCCCTGTGGCTGCAGCGCCCCCTACAGTCTCACCatcgtctctttctctctctgctccctctatccctctatccACACTCatgtgggggggtgggggtggggcaCAGGGTGACCCCCGGCCCATTTACTACAACAACAAACGCTGAACACACGCACTCTCTcacatgcactaacacacacacatatatacacacacacatacacacaccccaccACATATTTATATAGCGAGAGCAAAGCAGCTTGTTAAAGTGGGAGAGAATGAGACGGTGAGGACAAGAACAGGTTAAAGGTTAAAAGGGAGGGATGCATTTCTAGGGCCCTAGAGGACCGATCCTGGGAATTTAAGGCTATTTAAGAAGGAAAGGAGCAAAGCTTTTATTTGTTGGGAGGGGGGTTGTGtggagaggttttttttttcccttgggtttttttttgttttgttttttgttttgagacGGGGAAGTGGGTttggggggaga

Function

symbol description
pabpn1 Predicted to enable RNA binding activity. Human ortholog(s) of this gene implicated in oculopharyngeal muscular dystrophy. Orthologous to human PABPN1 (poly(A) binding protein nuclear 1).

NR:

description
PREDICTED: polyadenylate-binding protein 2-B-like isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14396 PABPN1, PABP2; polyadenylate-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937980.2 True 1536 mRNA 0.51 7 14565792 14577242
XM_026937981.2 False 1126 mRNA 0.51 7 14565793 14575630
XM_026937982.2 False 1164 mRNA 0.50 7 14566563 14577243

Neighbor

gene id symbol gene type direction distance location
zfhx2 NA coding upstream 1118 14543991 ~ 14564674 (+)
LOC113541072 NA coding upstream 30472 14529664 ~ 14535320 (+)
jph1a LOC108256670 coding upstream 48005 14486970 ~ 14517787 (+)
crispld1a LOC108256732 coding upstream 160030 14386961 ~ 14405762 (+)
cd226 NA coding upstream 256321 14297560 ~ 14309471 (+)
xkr9 xkr9 coding downstream 137552 14714795 ~ 14721577 (+)
eya1 eya1,LOC107657823 coding downstream 219401 14796644 ~ 14848084 (+)
trpa1b trpa1 coding downstream 507278 15084521 ~ 15110314 (+)
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding downstream 543983 15121226 ~ 15129603 (+)
si:ch73-173p19.1 LOC108256550 coding downstream 805743 15382986 ~ 15397527 (+)
LOC117595809 NA non-coding upstream 603608 13958024 ~ 13962184 (+)
G331502 NA non-coding upstream 1183156 13380644 ~ 13382636 (+)
G331496 eif2s3,LOC102783563 non-coding upstream 1203090 13361369 ~ 13362702 (+)
G331498 NA non-coding upstream 1204774 13360280 ~ 13361018 (+)
G331468 NA non-coding upstream 1275393 13287447 ~ 13290399 (+)
G332111 NA non-coding downstream 110920 14688163 ~ 14703270 (+)
G332238 NA non-coding downstream 367748 14944991 ~ 14945212 (+)
G332248 NA non-coding downstream 378617 14955860 ~ 14956067 (+)
G332334 NA non-coding downstream 488732 15065975 ~ 15113514 (+)
G332348 NA non-coding downstream 624574 15201817 ~ 15202305 (+)
G331476 NA other upstream 1307376 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 1853114 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 2409005 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 2817233 11717415 ~ 11748559 (+)
G330257 NA other upstream 3590877 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 557110 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 674392 15251635 ~ 15265895 (+)
G332636 NA other downstream 988932 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 2522921 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 2707839 17285082 ~ 17302004 (+)

Expression


Co-expression Network