LOC113541175 (LOC108256633)


Basic Information

Item Value
gene id LOC113541175
gene name LOC108256633
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20254383 ~ 20259930 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938010.2
GTTTGAAAAGATTCACTCGGCGCGTgataataacagaaaaaaggCGCGAGCTGCTCAGATTAGCATTTTATCTTTAGCAGttagcaaataaacaaaacgATGGTGTTCTGGTGTTAGAAGAAGATGCAGTTTGTGGAAGAGTATGATTCTGTCTACATTCCCGAGGAACAGCAGGATGAGGATTCGGACGAGGGAACGGATAAAGCTGAGCTCCTGCACTCCAACAGCTGCCTGAGGACGTTATACACCGACCTGCAGAAAGCCGTCGAAATGGCAGAGGACAGCAACGCGCTCCTCAGGACCGAGAACAGCGAGCTGAAGAACCAGATCAGAAGcaTGAAGCAGTCGATTCAGCATGTGCAGCCGCTTGTGAATGAACTGGAGGACATTCGAGCTGCGAAGACAGAGAAAGATCAGATCTGTGAGGAGATCGAAGCCAGCCGCAAAGAGCTCGTAAAGGAAAACGAAACGCTCAGGCAGCAGGTAGAAGCACTTTCTAGTGAGACGTCGAGTTTTCTCctggagagagagcagcaggagACGGAGGTCACCAAGCTCAGCTGCGTCCTCAGAGCTTTACAGCAACAGCTAGAGGAGAACCGGCTTCATCTGGAACAAAAAGATGAACTCATAAATCAGAGGGATTTTGTCATCGAGCAGCTCAAAGACTCAGTGTCAGAGTACATCACCATTAACCAGGACATGAAGGAGAAGCTAAAGGATTTGGAAGACCAGTTGGCTTTGGCGTTAGTTAGCGGTGAAGGAAGCTTCATGAACGTGGATACGACGCTGGAGCTCGCTCCTGAGCACTCCGTTTCACTCGGGGAAGAGCTCGGAATTCTGTCCAAGGATCAGATGAACCCTGACGAGGAGGAAcagaaagaggaggaagagaacgCAGAAGCTCTGGAGGAACAAGCAGCACTTTATGTGTCCGAAACcgTGACTGAGAGCTGTAAGAGAAATATAAGGAAAGGAGCCTGTGCTGCTGTCGCGCTCTGCTTCAGCGTGCTGGGGCTGTTCGGAGCGCTGACTCCCACCGTGCGCACAGACGTCTTGGACACCATCCGTCACCTGATCGAACCCTACTGCCGAATATATCACACCGGCCTTCCCCCTGTGTAAACACAAATCCACTCCGCTGTCCAGTGACCGGGGTTATCGGGTTATCGGTTTATTGATTGATAAGTTACACGGTTGCTGTTccagaagtaaaaaaataaaaataagacgTGTCACTGGAGTTGAAATTACAGCTGACTGTTCagtagtttgtttgttttttccccccaaactcTGATAATGTGATATCGATTAATCATTCCGCATCGATTtccaattaaatataaacaagcaTAAGAGCgttaaactgaaatatatatatttaaacatttgtgCGTAAAAGTTTGTACAGATTTCAtaaatccatattaatgccccTGGTTCTGGAATGTGATGTCCACAtaccttttggccatatagtgcatgtatactgatatacataataataataaaataataatattaataatattaactaaacaatcataataatatttCTGACTGTCTCTATAAATCTGAACTTTTATCTCACTTTTTATTcttgtttattctttattctctctAAATTTTATAGATGATTTTGTTACTAAACTTCCCCTTAAAcac
>XM_026938011.2
cagcATTCCGTACAGTTTAATATTCAGgacatttctgtgtttatttcactttaatatTCATCATGTAGTGTTCTGATGGTGTTCTGGTGTTAGAAGAAGATGCAGTTTGTGGAAGAGTATGATTCTGTCTACATTCCCGAGGAACAGCAGGATGAGGATTCGGACGAGGGAACGGATAAAGCTGAGCTCCTGCACTCCAACAGCTGCCTGAGGACGTTATACACCGACCTGCAGAAAGCCGTCGAAATGGCAGAGGACAGCAACGCGCTCCTCAGGACCGAGAACAGCGAGCTGAAGAACCAGATCAGAAGcaTGAAGCAGTCGATTCAGCATGTGCAGCCGCTTGTGAATGAACTGGAGGACATTCGAGCTGCGAAGACAGAGAAAGATCAGATCTGTGAGGAGATCGAAGCCAGCCGCAAAGAGCTCGTAAAGGAAAACGAAACGCTCAGGCAGCAGGTAGAAGCACTTTCTAGTGAGACGTCGAGTTTTCTCctggagagagagcagcaggagACGGAGGTCACCAAGCTCAGCTGCGTCCTCAGAGCTTTACAGCAACAGCTAGAGGAGAACCGGCTTCATCTGGAACAAAAAGATGAACTCATAAATCAGAGGGATTTTGTCATCGAGCAGCTCAAAGACTCAGTGTCAGAGTACATCACCATTAACCAGGACATGAAGGAGAAGCTAAAGGATTTGGAAGACCAGTTGGCTTTGGCGTTAGTTAGCGGTGAAGGAAGCTTCATGAACGTGGATACGACGCTGGAGCTCGCTCCTGAGCACTCCGTTTCACTCGGGGAAGAGCTCGGAATTCTGTCCAAGGATCAGATGAACCCTGACGAGGAGGAAcagaaagaggaggaagagaacgCAGAAGCTCTGGAGGAACAAGCAGCACTTTATGTGTCCGAAACcgTGACTGAGAGCTGTAAGAGAAATATAAGGAAAGGAGCCTGTGCTGCTGTCGCGCTCTGCTTCAGCGTGCTGGGGCTGTTCGGAGCGCTGACTCCCACCGTGCGCACAGACGTCTTGGACACCATCCGTCACCTGATCGAACCCTACTGCCGAATATATCACACCGGCCTTCCCCCTGTGTAAACACAAATCCACTCCGCTGTCCAGTGACCGGGGTTATCGGGTTATCGGTTTATTGATTGATAAGTTACACGGTTGCTGTTccagaagtaaaaaaataaaaataagacgTGTCACTGGAGTTGAAATTACAGCTGACTGTTCagtagtttgtttgttttttccccccaaactcTGATAATGTGATATCGATTAATCATTCCGCATCGATTtccaattaaatataaacaagcaTAAGAGCgttaaactgaaatatatatatttaaacatttgtgCGTAAAAGTTTGTACAGATTTCAtaaatccatattaatgccccTGGTTCTGGAATGTGATGTCCACAtaccttttggccatatagtgcatgtatactgatatacataataataataaaataataatattaataatattaactaaacaatcataataatatttCTGACTGTCTCTATAAATCTGAACTTTTATCTCACTTTTTATTcttgtttattctttattctctctAAATTTTATAGATGATTTTGTTACTAAACTTCCCCTTAAAcact
>XM_026938013.2
GTTTGAAAAGATTCACTCGGCGCGTgataataacagaaaaaaggCGCGAGCTGCTCAGATTAGCATTTTATCTTTAGCAGttagcaaataaacaaaacgATGGTGTTCTGGTGTTAGAAGAAGATGCAGTTTGTGGAAGAGTATGATTCTGTCTACATTCCCGAGGAACAGCAGGATGAGGATTCGGACGAGGGAACGGATAAAGCTGAGCTCCTGCACTCCAACAGCTGCCTGAGGACGTTATACACCGACCTGCAGAAAGCCGTCGAAATGGCAGAGGACAGCAACGCGCTCCTCAGGACCGAGAACAGCGAGCTGAAGAACCAGATCAGAAGcaTGAAGCAGTCGATTCAGCATGTGCAGCCGCTTGTGAATGAACTGGAGGACATTCGAGCTGCGAAGACAGAGAAAGATCAGATCTGTGAGGAGATCGAAGCCAGCCGCAAAGAGCTCGTAAAGGAAAACGAAACGCTCAGGCAGCAGGTAGAAGCACTTTCTAGTGAGACGTCGAGTTTTCTCctggagagagagcagcaggagACGGAGGTCACCAAGCTCAGCTGCGTCCTCAGAGCTTTACAGCAACAGCTAGAGGAGAACCGGCTTCATCTGGAACAAAAAGATGAACTCATAAATCAGGACATGAAGGAGAAGCTAAAGGATTTGGAAGACCAGTTGGCTTTGGCGTTAGTTAGCGGTGAAGGAAGCTTCATGAACGTGGATACGACGCTGGAGCTCGCTCCTGAGCACTCCGTTTCACTCGGGGAAGAGCTCGGAATTCTGTCCAAGGATCAGATGAACCCTGACGAGGAGGAAcagaaagaggaggaagagaacgCAGAAGCTCTGGAGGAACAAGCAGCACTTTATGTGTCCGAAACcgTGACTGAGAGCTGTAAGAGAAATATAAGGAAAGGAGCCTGTGCTGCTGTCGCGCTCTGCTTCAGCGTGCTGGGGCTGTTCGGAGCGCTGACTCCCACCGTGCGCACAGACGTCTTGGACACCATCCGTCACCTGATCGAACCCTACTGCCGAATATATCACACCGGCCTTCCCCCTGTGTAAACACAAATCCACTCCGCTGTCCAGTGACCGGGGTTATCGGGTTATCGGTTTATTGATTGATAAGTTACACGGTTGCTGTTccagaagtaaaaaaataaaaataagacgTGTCACTGGAGTTGAAATTACAGCTGACTGTTCagtagtttgtttgttttttccccccaaactcTGATAATGTGATATCGATTAATCATTCCGCATCGATTtccaattaaatataaacaagcaTAAGAGCgttaaactgaaatatatatatttaaacatttgtgCGTAAAAGTTTGTACAGATTTCAtaaatccatattaatgccccTGGTTCTGGAATGTGATGTCCACAtaccttttggccatatagtgcatgtatactgatatacataataataataaaataataatattaataatattaactaaacaatcataataatatttCTGACTGTCTCTATAAATCTGAACTTTTATCTCACTTTTTATTcttgtttattctttattctctctAAATTTTATAGATGATTTTGTTACTAAACTTCCCCTTAAAcact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938010.2 True 1668 mRNA 0.44 12 20254383 20259929
XM_026938011.2 False 1645 mRNA 0.44 12 20254764 20259930
XM_026938013.2 False 1609 mRNA 0.44 11 20254383 20259930

Neighbor

gene id symbol gene type direction distance location
tmtopsb tmtopsb,LOC108256142,LOC108440411,LOC107586803,LOC107685448 coding upstream 25443 20216094 ~ 20228940 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding upstream 47113 20194060 ~ 20207270 (+)
tfr1b NA coding upstream 65731 20173100 ~ 20188652 (+)
LOC113541177 NA coding upstream 87236 20164767 ~ 20167147 (+)
map3k15 map3k15,LOC107685453 coding upstream 102334 20116014 ~ 20152049 (+)
si:ch211-230g15.5 phc3 coding downstream 57798 20317728 ~ 20333594 (+)
cldn11b cldn11 coding downstream 74682 20334612 ~ 20339784 (+)
LOC117595803 ghsr,LOC107685461,LOC107586810,LOC107725860,LOC107721864 coding downstream 233402 20493332 ~ 20496346 (+)
LOC117595765 NA coding downstream 320650 20580580 ~ 20581545 (+)
larp4b larp4b coding downstream 332756 20592686 ~ 20612322 (+)
G335383 NA non-coding upstream 45766 20207524 ~ 20208617 (+)
G335379 NA non-coding upstream 62594 20091823 ~ 20191789 (+)
G335381 NA non-coding upstream 65060 20174778 ~ 20189323 (+)
G335377 NA non-coding upstream 195561 20058374 ~ 20058822 (+)
G335345 NA non-coding upstream 224892 19965544 ~ 20029491 (+)
G335558 NA non-coding downstream 641 20260571 ~ 20260807 (+)
G335563 eif5a2,eif5a,LOC107685442,LOC107590245,LOC107586748 non-coding downstream 26151 20286081 ~ 20371855 (+)
G335582 NA non-coding downstream 40656 20300586 ~ 20300899 (+)
G335564 NA non-coding downstream 104487 20364417 ~ 20366758 (+)
G335593 NA non-coding downstream 118477 20378407 ~ 20380717 (+)
ccl20b NA other upstream 91277 20160267 ~ 20163106 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other upstream 266347 19985332 ~ 19988036 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 371547 19870381 ~ 19882836 (+)
G335231 NA other upstream 465325 19788583 ~ 19789058 (+)
si:ch73-264p11.1 sh21b other upstream 570513 19678481 ~ 19683870 (+)
mynn mynn other downstream 1938 20261868 ~ 20270565 (+)
lrrc34 lrrc34 other downstream 14190 20274120 ~ 20281252 (+)
vipr2 vipr2,LOC107656837 other downstream 484819 20744749 ~ 20764373 (+)

Expression


Co-expression Network