LOC113541177


Basic Information

Item Value
gene id LOC113541177
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20164767 ~ 20167147 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938015.2
acacacacacacacacacacacactctcactcacactgcaacacacacagagacacgctCCGTACCACACAAAtgccccaacacacacacacacacactccgctcTGTAAATCTtctcagagaggaaaaaagagaggaaaagatggATACAACATCATGGCTGTGTTGAAGATTCCCACTGGGACGTTTCtgttcatcctcatcctcagtGCCTTCATCACGGACACAGAAACAGCACGATGCTGCTTTTCCTACACACGGAGGCCTGTTCGCTGCGCCCGGCTGCTGGGCTACTTCATCCAGGAAATCACCGGAAACTGTGACATCAGAGCTATAATTTTTAAGACCCGGGATGAGAGACTCATCTGCGCCGATCCCAGAATGGAGTGGACTCAAGAGAGGATCACGTGTCTGTGGGAAAAGGCTGGAACGATGGAATATTGGAAGAACGGAATGAATGAAGGATGGATGAAACTAGCGTGACATCTTGTTtgggaaaaatccaccctgaacaatttgcatattaatcttcataattaattaataattaattataataattaatatttaataatgaatatgtTTAATATGGATTTATTCTGTAATGAAATTGTGAGGTTTTCAGTTTAACCCTTTCAGGCCAGTCTAGATGCAGAGTGTTTCCTGTAAGTctattattcaaaataaatgaattaatgattttatataaacatatttatactcatttgcatttaaacattGCATTTGCTTTTGCTATTCCTGCAATACCTTTATTTTTGTACGTGTTTAATATGTTCACATGTAACATGTgatttaaataatacaaataactaaaataaatataaacaatacactgcattttaaactcatttatTCATGAATCAGTTCAACGTATTTCACTtacggtttcctacattacccacaatgccctgCACTCCATGactccatcaactccatcagctccatcattccatcactccatcaactccatcagatccatcagctccatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938015.2 True 1011 mRNA 0.39 4 20164767 20167147

Neighbor

gene id symbol gene type direction distance location
map3k15 map3k15,LOC107685453 coding upstream 12718 20116014 ~ 20152049 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding upstream 52376 20050736 ~ 20112391 (+)
LOC113541169 klhl34 coding upstream 277210 19884047 ~ 19887557 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding upstream 414712 19740057 ~ 19750055 (+)
amer2 amer2 coding upstream 560997 19600565 ~ 19603770 (+)
tfr1b NA coding downstream 5953 20173100 ~ 20188652 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding downstream 26913 20194060 ~ 20207270 (+)
tmtopsb tmtopsb,LOC108256142,LOC108440411,LOC107586803,LOC107685448 coding downstream 48947 20216094 ~ 20228940 (+)
LOC113541175 LOC108256633 coding downstream 87236 20254383 ~ 20259930 (+)
si:ch211-230g15.5 phc3 coding downstream 150581 20317728 ~ 20333594 (+)
G335377 NA non-coding upstream 105945 20058374 ~ 20058822 (+)
G335345 NA non-coding upstream 135276 19965544 ~ 20029491 (+)
G335243 NA non-coding upstream 339856 19824703 ~ 19824911 (+)
G335215 NA non-coding upstream 396424 19767463 ~ 19768343 (+)
G335214 NA non-coding upstream 397941 19766470 ~ 19766826 (+)
G335381 NA non-coding downstream 7631 20174778 ~ 20189323 (+)
G335383 NA non-coding downstream 40377 20207524 ~ 20208617 (+)
G335558 NA non-coding downstream 93424 20260571 ~ 20260807 (+)
G335563 eif5a2,eif5a,LOC107685442,LOC107590245,LOC107586748 non-coding downstream 118934 20286081 ~ 20371855 (+)
G335582 NA non-coding downstream 133439 20300586 ~ 20300899 (+)
ccl20b NA other upstream 1661 20160267 ~ 20163106 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other upstream 176731 19985332 ~ 19988036 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 281931 19870381 ~ 19882836 (+)
G335231 NA other upstream 375709 19788583 ~ 19789058 (+)
cip2a kiaa1524 other upstream 460963 19636868 ~ 19703804 (+)
mynn mynn other downstream 94721 20261868 ~ 20270565 (+)
lrrc34 lrrc34 other downstream 106973 20274120 ~ 20281252 (+)
vipr2 vipr2,LOC107656837 other downstream 577602 20744749 ~ 20764373 (+)

Expression


Co-expression Network