spice1 (spice1)


Basic Information

Item Value
gene id spice1
gene name spice1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17621946 ~ 17629485 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938032.2
TAGCTTTCTGTGTTTCGTGCGTAGCGCATTAGGTAGCTTTATAGCTAATCTGAGTAAACAGTAAGAAGCTCTTTAgcacagttagctagctgacaGGCTCGCGCTTCTGACTACCTTCCTTAGATTGGTCGCTAAAATAAcgcttttaaatcattttacttTCGGTTTTTCAGGACTACGTTAATGTTTCTGTATGAAAATATGTTTCTGTTATCTGTTATGTTGTTGTACAGCGTTATTAAGGTAATAGTGATGACTTTTATGTTGTAAAGGGATGTCGTTTGTGCGGATTAACAGAAGACCAGCGCGAGCGAAGAAAGTGTCAGTTCCCAGGAAAGAGTGGGTGAGCACAGTTAATGACCTGTCAGTGCACAGAGCTACAGCTGAGGAACTGtccagGCGCCATGACCAGCACCGATCTCACAACAGAGCTGCTGCACAGTGGGAGCTGAGGGAGAAAGCGCTGAAGAAGAGAAAGCCCCGGCAGGCCAGCCCTCCTGGACTAGACCAGAGCAGACTGCGATTATTcagagaggtgTTCTCGGATCACTGTGAGCTGCAGGACGTTCTCGCGCGGTCTGACAGAGCACTGGCGGTGGTGAGGGATCTGTTCGGCGACGCACCTCGCAGACAGAAAGGTTTTCCGAGCGTAACCATGGCGCCTGACTGCGAGTCGGATTCTGAACTTCCTGTGCTGCAGAAACCGGATCCACCAACACAGCTGTCACTGCTCAGCCAATCAGTAATGGACCAACAGGCTTTAAATGAAGTGGATGATTCTGCAGCAGAGCATGGGGAAGATCTTCAGGATGTCTCGGTCAGCTTCAGCAGTGAAATGTGCAGGCCGAAGAGAAAAACGTGTAAAGCAAAGCCTCCTGTTTGGAGAACAACTCAGCAACCACAGCAGCAGAACGTTCCTCAGACTCCCTGTAACGCAACAAGCTCAGAGGACCATGCGGCTCTGAACGCAACCCTGGCTGTGCAGCGTCTAAAGTCGAGGCAGTCTCAGTCAGAGGCAGACCAGTCCACCACTCTCGTCACTCAGGTCCTCAATCCTGAACCGTCTCCCTCTCGTTCTGGTGGTAAGAGCAGGTCGTTCAGAACCACCAGAGGGCGCTCTCCTGAAGCCTCAGGCTTTAGCTCTCAGAGTGCTAACCAGTCGAGCCTGGAGCTGCTGCAGGACATGCTGGCTCAGGTGGAGACTGAACTGGCCTGCTTGGAGCCGCAGGAGCTTTTTGGACCCTCGGAGCAACCCGAGCTTCAGCATGGCCGTGGCCTTACTGGCTTCTCTGTGGCTCTTGTTGGTACTTTAGGACGCATCGTTGGTCATCTGAGACGAAGGGACGAGGAGATGCAAAAGGAGGCACATGTGAGGAAGAGGATGGAAGAGGAGATGAAGGAGCAGAGAAGCCTGATTGATGCCCTCACAGCGGAGTGTCTCACACTGAGAGAGGAAAGCGCCGCCCTACAGGCGAATGTGCAGGAGCGGATAGCTGAACTCGAACAGCGGCTGGACATGGTGATCCTTACAATGGGAGAGCTGGGAAAAGACGGAGACACACAGGGCGAAGAGGAAAACACACCAAGTGGAAGCCTCCAGCCTGTAACTGCTGAGAGAGACCAAGAGGAGCCAGCCCCGATCTCTCCTGCTGTGCTGCTCTCTCCTCCACaccagagagacagcagagcgCCGCCTACAGCACGCGCCCGATCTTTGCACTTCGAGGGCTCTCACACTTCAAGCAGTGGGTCACCAGGAGAGTCGGACATCTCGTGCACTCCGTCCTCATTCGCTAGCCTGCCCGAGAGCGTCCTGCCTCGTCCTGCCCCGCTGCTGAACCAGCTATCCCAGGATGCCATGCTGGAGCAGATAGCGGAGTTAACCCGTCAGAACGCAGTGATCCGGGCTCAGCTAGGGCACAACCATGCCTCTCCTACACAATGCTCAGACGGACGTGCATCGCCCCCTGCTGGACCCACACAACAGtgtgtgggtgtggaggATTCCTCAGTGAGGCTTATGGAGGACAGACTTCAGGAGCTGAACAGACAGAGTGCAGCAGCCAGGGCGAAACTGCTGGAGCTTATCGAGCAGCAGAGACAGACCACATCTCACAGTgcctctccctccatctccccCATACCCCCACACTCCACCAGTCctcacacagTTATTGGAAGGCGGACTCCTGAAGTGTGCGTGTCTGTACCTGAAAGAGCCCAGCCCTCTCACGCCAGGACAAACGGCAGAAGGTCAGCTGAAGCAGTTTCTCCACAAAATGTAGAGGGAAGACAAAAGCAGTCTGTTaatacacagGTGGATAAACTGAAAGGAGAAGGCTGGTTTGCGCTGTCAGCTCACGTCCGATAGCTTGACTGACTGGAGGACTGGAGGGACgctacagttacacactacctgcattctttcattcttgtCTCCCTGGctgttttagtttttaattttgcacatGTCAATAAATTTTAgacaaaca
>XM_026938033.2
CCGTTTAGGACTTTTGTTTTGAAGCGCGCGCTGATTGGCGGTGGTTTTTAAAAAGATCAGTTGCTTTCTTCACCATCAGCTCATAGCAACAAAACACAAGCTCCTGCCTGTATATCCGGAGAGGGATGTCGTTTGTGCGGATTAACAGAAGACCAGCGCGAGCGAAGAAAGTGTCAGTTCCCAGGAAAGAGTGGGTGAGCACAGTTAATGACCTGTCAGTGCACAGAGCTACAGCTGAGGAACTGtccagGCGCCATGACCAGCACCGATCTCACAACAGAGCTGCTGCACAGTGGGAGCTGAGGGAGAAAGCGCTGAAGAAGAGAAAGCCCCGGCAGGCCAGCCCTCCTGGACTAGACCAGAGCAGACTGCGATTATTcagagaggtgTTCTCGGATCACTGTGAGCTGCAGGACGTTCTCGCGCGGTCTGACAGAGCACTGGCGGTGGTGAGGGATCTGTTCGGCGACGCACCTCGCAGACAGAAAGGTTTTCCGAGCGTAACCATGGCGCCTGACTGCGAGTCGGATTCTGAACTTCCTGTGCTGCAGAAACCGGATCCACCAACACAGCTGTCACTGCTCAGCCAATCAGTAATGGACCAACAGGCTTTAAATGAAGTGGATGATTCTGCAGCAGAGCATGGGGAAGATCTTCAGGATGTCTCGGTCAGCTTCAGCAGTGAAATGTGCAGGCCGAAGAGAAAAACGTGTAAAGCAAAGCCTCCTGTTTGGAGAACAACTCAGCAACCACAGCAGCAGAACGTTCCTCAGACTCCCTGTAACGCAACAAGCTCAGAGGACCATGCGGCTCTGAACGCAACCCTGGCTGTGCAGCGTCTAAAGTCGAGGCAGTCTCAGTCAGAGGCAGACCAGTCCACCACTCTCGTCACTCAGGTCCTCAATCCTGAACCGTCTCCCTCTCGTTCTGGTGGTAAGAGCAGGTCGTTCAGAACCACCAGAGGGCGCTCTCCTGAAGCCTCAGGCTTTAGCTCTCAGAGTGCTAACCAGTCGAGCCTGGAGCTGCTGCAGGACATGCTGGCTCAGGTGGAGACTGAACTGGCCTGCTTGGAGCCGCAGGAGCTTTTTGGACCCTCGGAGCAACCCGAGCTTCAGCATGGCCGTGGCCTTACTGGCTTCTCTGTGGCTCTTGTTGGTACTTTAGGACGCATCGTTGGTCATCTGAGACGAAGGGACGAGGAGATGCAAAAGGAGGCACATGTGAGGAAGAGGATGGAAGAGGAGATGAAGGAGCAGAGAAGCCTGATTGATGCCCTCACAGCGGAGTGTCTCACACTGAGAGAGGAAAGCGCCGCCCTACAGGCGAATGTGCAGGAGCGGATAGCTGAACTCGAACAGCGGCTGGACATGGTGATCCTTACAATGGGAGAGCTGGGAAAAGACGGAGACACACAGGGCGAAGAGGAAAACACACCAAGTGGAAGCCTCCAGCCTGTAACTGCTGAGAGAGACCAAGAGGAGCCAGCCCCGATCTCTCCTGCTGTGCTGCTCTCTCCTCCACaccagagagacagcagagcgCCGCCTACAGCACGCGCCCGATCTTTGCACTTCGAGGGCTCTCACACTTCAAGCAGTGGGTCACCAGGAGAGTCGGACATCTCGTGCACTCCGTCCTCATTCGCTAGCCTGCCCGAGAGCGTCCTGCCTCGTCCTGCCCCGCTGCTGAACCAGCTATCCCAGGATGCCATGCTGGAGCAGATAGCGGAGTTAACCCGTCAGAACGCAGTGATCCGGGCTCAGCTAGGGCACAACCATGCCTCTCCTACACAATGCTCAGACGGACGTGCATCGCCCCCTGCTGGACCCACACAACAGtgtgtgggtgtggaggATTCCTCAGTGAGGCTTATGGAGGACAGACTTCAGGAGCTGAACAGACAGAGTGCAGCAGCCAGGGCGAAACTGCTGGAGCTTATCGAGCAGCAGAGACAGACCACATCTCACAGTgcctctccctccatctccccCATACCCCCACACTCCACCAGTCctcacacagTTATTGGAAGGCGGACTCCTGAAGTGTGCGTGTCTGTACCTGAAAGAGCCCAGCCCTCTCACGCCAGGACAAACGGCAGAAGGTCAGCTGAAGCAGTTTCTCCACAAAATGTAGAGGGAAGACAAAAGCAGTCTGTTaatacacagGTGGATAAACTGAAAGGAGAAGGCTGGTTTGCGCTGTCAGCTCACGTCCGATAGCTTGACTGACTGGAGGACTGGAGGGACgctacagttacacactacctgcattctttcattcttgtCTCCCTGGctgttttagtttttaattttgcacatGTCAATAAATTTTAgacaaaca

Function

symbol description
spice1 Predicted to be involved in metaphase plate congression; mitotic spindle assembly; and regulation of centriole replication. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in centriole; centrosome; and spindle. Orthologous to human SPICE1 (spindle and centriole associated protein 1).

NR:

description
spindle and centriole-associated protein 1 isoform X2

GO: NA

KEGG:

id description
K16490 SPICE1; spindle and centriole-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938032.2 True 2492 mRNA 0.53 17 17622103 17629485
XM_026938033.2 False 2343 mRNA 0.55 18 17621946 17629485

Neighbor

gene id symbol gene type direction distance location
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding upstream 16753 17543823 ~ 17605193 (+)
gpr12 gpr12,LOC107701646,LOC107716385,LOC107654195,LOC107705188 coding upstream 118243 17496077 ~ 17503703 (+)
usp12a usp12,usp12a,LOC107705210,LOC107584971,LOC107591222,LOC107654221 coding upstream 129628 17483693 ~ 17492318 (+)
lnx2a lnx2,lnx2a,LOC107716412,LOC107584972,LOC107701681,LOC107591221 coding upstream 155494 17450723 ~ 17466452 (+)
urad urad coding upstream 187121 17432046 ~ 17434825 (+)
LOC113541191 cfap44 coding downstream 6898 17636383 ~ 17653613 (+)
boc boc coding downstream 49413 17678898 ~ 17706118 (+)
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding downstream 98368 17727853 ~ 17739585 (+)
chodl chodl coding downstream 312943 17942428 ~ 17951626 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding downstream 331503 17960988 ~ 17963471 (+)
G333582 NA non-coding upstream 174903 17446185 ~ 17447043 (+)
G333548 NA non-coding upstream 258871 17362871 ~ 17363075 (+)
G333360 NA non-coding upstream 435271 17186129 ~ 17186675 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 724091 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 731785 16888906 ~ 16890161 (+)
G333787 NA non-coding downstream 38151 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 40931 17670416 ~ 17670625 (+)
G333779 usf3 non-coding downstream 78237 17707722 ~ 17712380 (+)
G333795 NA non-coding downstream 111916 17741401 ~ 17756282 (+)
G333797 NA non-coding downstream 126840 17756325 ~ 17756542 (+)
rnf6 rnf6,LOC106590444 other upstream 79559 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 319942 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 511919 17100164 ~ 17110027 (+)
G332636 NA other upstream 2055283 15566175 ~ 15566663 (+)
si:ch73-173p19.2 LOC108256301 other upstream 2356051 15251635 ~ 15265895 (+)
pan3 pan3,LOC107705213 other downstream 132046 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 357277 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 685869 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 838393 18467878 ~ 18486009 (+)
G334373 NA other downstream 1063664 18693149 ~ 18717953 (+)

Expression


Co-expression Network