lztfl1 (lztfl1,LOC107701792)


Basic Information

Item Value
gene id lztfl1
gene name lztfl1,LOC107701792
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10440957 ~ 10477542 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938034.2
ACTTCTTCATGGATGTCTTCAACGCTCTACTGCCTATCTTGCTTTAGTGTTCCCTGCTGTCTGTGTGGTAATAGCGCAGTGACGCTGTTCCGTTGCCAGGAGCAACTTACATAGACTGAGGGGAAACGCATGATAGATAACGTAGTTAATTCGCATTTACTAAAATACTGGACGAAAATGATTAACTAGAATTCACGGTGCAGTGCCTTATTGTCCCCATGTTATCACACTAGTTTACACTCTGACGTCTGTATTTTTCTGCATAAAGTCGCATTTTCAGCTTGCTGCCATGGCCGATTTTGGGTTCAACGAACATCACCAGAACGAGGTCATAAACTATATGCGCTTTGCTCGCTCCAAGAGGCTTCTGCGACTCAAGACCATTGACTCATGCTTTCAGGAACTCAAAGACAGCAGACTGGTTGAGGAGACATTTACGGTGGATGAGGTGTCAGATATGCTGGATGGTCTACAGGTAGTGGTGCGTGGAGAGGTGGAGATGGAGCTCATCAACACCGCCCACACCAATGTCCTGCTCCTGCGCCAGCTCTTCTCCCAGGCTGAGAAGTTCTACCTGAAACTGCAGACCGATATCTCAGAGCTGGAGAGCAGAGAATTACTGGAACAAGTAGCAGCATTTGAAAAGACTGATTTTAAATCCAACAGCAAGGTAAATCAGGAATCCAGCAAACCCAAGTTAGCCCCACTGAATGAGGGAGGAGTGTCAGAACTGCTCAACAAGGAAATTTCCAGACTACAAGAGGAGAATGATAAACTGAGAGCTAGACTCCGAACATTGGAAAGTAAGGCCATGAATGCCCTAGATGAGAAGTGCGAGGCTGAGAGGGCCCTGAATGATCTTCAGAAAATCCAGGGAGATCAGCAGCACGCCATGCACGCTCAGGAGATCTCTAAACTGGAGGACACTGTGGCAGCCATGCAGATCGATTTTGAGAAGACGCTTAGTGCCAGTACTGCATCACAGAAGGAGCTACAGGACAGCCTAGTGTCAGCTAAACATGAGCTGCTCCGTGTTCAAGATCACCTCGCCCTTGCTGAGAAGgaACTAGATAAGAAGTTTCAACAAACAGCTGCATATCGGAACATGAAAGAAATTCTGAGTAAGAAGAATGACCAGATTAAGGAGCTCAGGAAAAGATTGCAAAGATACGAGTCTGATGAGTGAAGTCCTGGGCCACAGAAAATGGCATGTGTGAAAATGGCATGTGTGAAGGGGCTTTATAGGCAAAAAGGAGCTGAAGTCAGTTTTGGCCTCAACGCTATAAACATGGCAAGGGACcaaagaatgaaacaaaagaagaacaaaaaggaAGTTTTTAATAATCATTGCTATTCCCAAGTTTCTCTTTAACAAGAACTGCCCATTTGATTAAAACTATTGCTGTGCTTAGGGATGTTTGTTGTACCTGTGTGTCCTATGTTCCATTTTGAATGAGGTTATTGTGTGCAGTTTATCATCTAAAATGTACAAGTGTTTCCACTTAAAACTCCCACTTTGTTAGTtgaggcatatatatatatatatatttttttgtctcttagTATGTCATCTGGTCTTGTGCGCCAGCACAGCacttatattttctttcttgtatTGAAAGTTTCGTTGCTATTGCATTAGGAGCAATGATAAATGTTCAGTGACAATGAGCTCTGAATTAAGATGGTTTTAGATAATAGCAATTGAGGCCACTTTCTGATCGATTTTGTCCTTGCTTTCTGTATTTATCTGTGATGGCATGTCTATCTTTCAGCATCTATCAGCATgtctatcttttttttgtcattctgtAGTTTTAGGTTTATTGTGGACTGTATTTACAAAtgattttacatgttttaattgTAGTTTAATAGTAGTTTTCTATCCAGGTTATCCACctaagaaaggaagaaaatgacTTTAAATTGCTTCCTGTATCCACACTACACTAGccagaatatatttttgtaaaaagttAAGTCCATTCACAAACTATGACAGACTGTAGTTATTGAATAAGCACCTGAGGACCTGGGTCATTTGTGCCTGTGTGCACATGCCATGTGCACATGTAGCAACTAAATCACTGTAATAGGGACACTGTAATCTGTAATAGTTGTGGTATTGAGTATGTGGCTGGGATGCACAGCATTATGAACACCATTTCTTTACTTTCCCAATGTTGAAAGTAGCATCATcaagaaaaaacacacttagCCACTGTTAATGTAAGAGTTCCTCTTATTGTACACCACATAAGgcaatattaaacaaaaaaaaaattacagtatgaTAAGCTACCCtattttggaaatgccagtcagcctacaccATGTCTTTTTCAAAAATTCCCCTCAAGTTTTCATGGCATAAATCACGACGTAATTCCTCATTGTAACAAgttctgaaataataaaaatcccaTTAAAGTAAAATCCCCAGAACTATTCTTTGA
>XM_026938035.2
ACTTCTTCATGGATGTCTTCAACGCTCTACTGCCTATCTTGCTTTAGTGTTCCCTGCTGTCTGTGTGGTAATAGCGCAGTGACGCTGTTCCGTTGCCAGGAGCAACTTACATAGACTGAGGGGAAACGCATGATAGATAACGTAGTTAATTCGCATTTACTAAAATACTGGACGAAAATGATTAACTAGAATTCACGGTGCAGTGCCTTATTGTCCCCATGTTATCACACTAGTTTACACTCTGACGTCTGTATTTTTCTGCATAAAGTCGCATTTTCAGCTTGCTGCCATGGCCGATTTTGGGTTCAACGAACATCACCAGAACGAGGTCATAAACTATATGCGCTTTGCTCGCTCCAAGAGGCTTCTGCGACTCAAGACCATTGACTCATGCTTTCAGGAACTCAAAGACAGCAGACTGGTTGAGGAGACATTTACGGTGGATGAGGTGTCAGATATGCTGGATGGTCTACAGGTAGTGGTGCGTGGAGAGGTGGAGATGGAGCTCATCAACACCGCCCACACCAATGTCCTGCTCCTGCGCCAGCTCTTCTCCCAGGCTGAGAAGTTCTACCTGAAACTGCAGACCGATATCTCAGAGCTGGAGAGCAGAGAATTACTGGAACAAGTAGCAGCATTTGAAAAGACTGATTTTAAATCCAACAGCAAGGTAAATCAGGAATCCAGCAAACCCAAGTTAGCCCCACTGAATGAGGGAGGAGTGTCAGAACTGCTCAACAAGGAAATTTCCAGACTACAAGAGGAGAATGATAAACTGAGAGCTAGACTCCGAACATTGGAAAGTAAGGCCATGAATGCCCTAGATGAGAAGTGCGAGGCTGAGAGGGCCCTGAATGATCTTCAGAAAATCCAGGGAGATCAGCAGGAGATCTCTAAACTGGAGGACACTGTGGCAGCCATGCAGATCGATTTTGAGAAGACGCTTAGTGCCAGTACTGCATCACAGAAGGAGCTACAGGACAGCCTAGTGTCAGCTAAACATGAGCTGCTCCGTGTTCAAGATCACCTCGCCCTTGCTGAGAAGgaACTAGATAAGAAGTTTCAACAAACAGCTGCATATCGGAACATGAAAGAAATTCTGAGTAAGAAGAATGACCAGATTAAGGAGCTCAGGAAAAGATTGCAAAGATACGAGTCTGATGAGTGAAGTCCTGGGCCACAGAAAATGGCATGTGTGAAAATGGCATGTGTGAAGGGGCTTTATAGGCAAAAAGGAGCTGAAGTCAGTTTTGGCCTCAACGCTATAAACATGGCAAGGGACcaaagaatgaaacaaaagaagaacaaaaaggaAGTTTTTAATAATCATTGCTATTCCCAAGTTTCTCTTTAACAAGAACTGCCCATTTGATTAAAACTATTGCTGTGCTTAGGGATGTTTGTTGTACCTGTGTGTCCTATGTTCCATTTTGAATGAGGTTATTGTGTGCAGTTTATCATCTAAAATGTACAAGTGTTTCCACTTAAAACTCCCACTTTGTTAGTtgaggcatatatatatatatatatttttttgtctcttagTATGTCATCTGGTCTTGTGCGCCAGCACAGCacttatattttctttcttgtatTGAAAGTTTCGTTGCTATTGCATTAGGAGCAATGATAAATGTTCAGTGACAATGAGCTCTGAATTAAGATGGTTTTAGATAATAGCAATTGAGGCCACTTTCTGATCGATTTTGTCCTTGCTTTCTGTATTTATCTGTGATGGCATGTCTATCTTTCAGCATCTATCAGCATgtctatcttttttttgtcattctgtAGTTTTAGGTTTATTGTGGACTGTATTTACAAAtgattttacatgttttaattgTAGTTTAATAGTAGTTTTCTATCCAGGTTATCCACctaagaaaggaagaaaatgacTTTAAATTGCTTCCTGTATCCACACTACACTAGccagaatatatttttgtaaaaagttAAGTCCATTCACAAACTATGACAGACTGTAGTTATTGAATAAGCACCTGAGGACCTGGGTCATTTGTGCCTGTGTGCACATGCCATGTGCACATGTAGCAACTAAATCACTGTAATAGGGACACTGTAATCTGTAATAGTTGTGGTATTGAGTATGTGGCTGGGATGCACAGCATTATGAACACCATTTCTTTACTTTCCCAATGTTGAAAGTAGCATCATcaagaaaaaacacacttagCCACTGTTAATGTAAGAGTTCCTCTTATTGTACACCACATAAGgcaatattaaacaaaaaaaaaattacagtatgaTAAGCTACCCtattttggaaatgccagtcagcctacaccATGTCTTTTTCAAAAATTCCCCTCAAGTTTTCATGGCATAAATCACGACGTAATTCCTCATTGTAACAAgttctgaaataataaaaatcccaTTAAAGTAAAATCCCCAGAACTATTCTTTGA
>XM_026938036.2
CTCCTGATTATCGAGGCTTGATAGTTAGCTAAGAGTTACGAGTGATGTAACCGACGGCATCATTAATCATATGAACAGAATGTTAGTAACTGCGTGGAAACGACGAGCTAGCTAATAGACAATAAACACTGGCCGATTTTGGGTTCAACGAACATCACCAGAACGAGGTCATAAACTATATGCGCTTTGCTCGCTCCAAGAGGCTTCTGCGACTCAAGACCATTGACTCATGCTTTCAGGAACTCAAAGACAGCAGACTGGTTGAGGAGACATTTACGGTGGATGAGGTGTCAGATATGCTGGATGGTCTACAGGTAGTGGTGCGTGGAGAGGTGGAGATGGAGCTCATCAACACCGCCCACACCAATGTCCTGCTCCTGCGCCAGCTCTTCTCCCAGGCTGAGAAGTTCTACCTGAAACTGCAGACCGATATCTCAGAGCTGGAGAGCAGAGAATTACTGGAACAAGTAGCAGCATTTGAAAAGACTGATTTTAAATCCAACAGCAAGGTAAATCAGGAATCCAGCAAACCCAAGTTAGCCCCACTGAATGAGGGAGGAGTGTCAGAACTGCTCAACAAGGAAATTTCCAGACTACAAGAGGAGAATGATAAACTGAGAGCTAGACTCCGAACATTGGAAAGTAAGGCCATGAATGCCCTAGATGAGAAGTGCGAGGCTGAGAGGGCCCTGAATGATCTTCAGAAAATCCAGGGAGATCAGCAGCACGCCATGCACGCTCAGGAGATCTCTAAACTGGAGGACACTGTGGCAGCCATGCAGATCGATTTTGAGAAGACGCTTAGTGCCAGTACTGCATCACAGAAGGAGCTACAGGACAGCCTAGTGTCAGCTAAACATGAGCTGCTCCGTGTTCAAGATCACCTCGCCCTTGCTGAGAAGgaACTAGATAAGAAGTTTCAACAAACAGCTGCATATCGGAACATGAAAGAAATTCTGAGTAAGAAGAATGACCAGATTAAGGAGCTCAGGAAAAGATTGCAAAGATACGAGTCTGATGAGTGAAGTCCTGGGCCACAGAAAATGGCATGTGTGAAAATGGCATGTGTGAAGGGGCTTTATAGGCAAAAAGGAGCTGAAGTCAGTTTTGGCCTCAACGCTATAAACATGGCAAGGGACcaaagaatgaaacaaaagaagaacaaaaaggaAGTTTTTAATAATCATTGCTATTCCCAAGTTTCTCTTTAACAAGAACTGCCCATTTGATTAAAACTATTGCTGTGCTTAGGGATGTTTGTTGTACCTGTGTGTCCTATGTTCCATTTTGAATGAGGTTATTGTGTGCAGTTTATCATCTAAAATGTACAAGTGTTTCCACTTAAAACTCCCACTTTGTTAGTtgaggcatatatatatatatatatttttttgtctcttagTATGTCATCTGGTCTTGTGCGCCAGCACAGCacttatattttctttcttgtatTGAAAGTTTCGTTGCTATTGCATTAGGAGCAATGATAAATGTTCAGTGACAATGAGCTCTGAATTAAGATGGTTTTAGATAATAGCAATTGAGGCCACTTTCTGATCGATTTTGTCCTTGCTTTCTGTATTTATCTGTGATGGCATGTCTATCTTTCAGCATCTATCAGCATgtctatcttttttttgtcattctgtAGTTTTAGGTTTATTGTGGACTGTATTTACAAAtgattttacatgttttaattgTAGTTTAATAGTAGTTTTCTATCCAGGTTATCCACctaagaaaggaagaaaatgacTTTAAATTGCTTCCTGTATCCACACTACACTAGccagaatatatttttgtaaaaagttAAGTCCATTCACAAACTATGACAGACTGTAGTTATTGAATAAGCACCTGAGGACCTGGGTCATTTGTGCCTGTGTGCACATGCCATGTGCACATGTAGCAACTAAATCACTGTAATAGGGACACTGTAATCTGTAATAGTTGTGGTATTGAGTATGTGGCTGGGATGCACAGCATTATGAACACCATTTCTTTACTTTCCCAATGTTGAAAGTAGCATCATcaagaaaaaacacacttagCCACTGTTAATGTAAGAGTTCCTCTTATTGTACACCACATAAGgcaatattaaacaaaaaaaaaattacagtatgaTAAGCTACCCtattttggaaatgccagtcagcctacaccATGTCTTTTTCAAAAATTCCCCTCAAGTTTTCATGGCATAAATCACGACGTAATTCCTCATTGTAACAAgttctgaaataataaaaatcccaTTAAAGTAAAATCCCCAGAACTATTCTTTGA
>XM_026938037.2
TATCACTTCTTCATGGATGTCTTCAACGCTCTACTGCCTATCTTGCTTTAGTGTTCCCTGCTGTCTGTGTGGTAATAGCGCAGTGACGCTGTTCCGTTGCCAGGAGCAACTTACATAGACTGAGGGGAAACGCATGATAGATAACGTAGTTAATTCGCATTTACTAAAATACTGGACGAAAATGATTAACTAGAATTCACGGTGCAGTGCCTTATTGTCCCCATGTTATCACACTAGTTTACACTCTGACGTCTGTATTTTTCTGCATAAAGTCGCATTTTCAGCTTGCTGCCATGGCCGATTTTGGGTTCAACGAACATCACCAGAACGAGGTCATAAACTATATGCGCTTTGCTCGCTCCAAGAGGCTTCTGCGACTCAAGACCATTGACTCATGCTTTCAGGAACTCAAAGACAGCAGACTGGTTGAGGAGACATTTACGGTGGATGAGGTGTCAGATATGCTGGATGGTCTACAGGTAGTGGTGCGTGGAGAGGTGGAGATGGAGCTCATCAACACCGCCCACACCAATGTCCTGCTCCTGCGCCAGCTCTTCTCCCAGGCTGAGAAGTTCTACCTGAAACTGCAGACCGATATCTCAGAGCTGGAGAGCAGAGAATTACTGGAACAAGTAGCAGCATTTGAAAAGACTGATTTTAAATCCAACAGCAAGGTAAATCAGGAATCCAGCAAACCCAAGTTAGCCCCACTGAATGAGGGAGGAGTGTCAGAACTGCTCAACAAGGAAATTTCCAGACTACAAGAGGAGAATGATAAACTGAGAGCTAGACTCCGAACATTGGAAAGTAAGGCCATGAATGCCCTAGATGAGAAGTGCGAGGCTGAGAGGGCCCTGAATGATCTTCAGAAAATCCAGGGAGATCAGCAGCACGCCATGCACGCTCAGGAGATCTCTAAACTGGAGGACACTGTGGCAGCCATGCAGATCGATTTTGAGAAGACGCTTAGTGCCAGTACTGCATCACAGAAGGAGCTACAGGACAGCCTAGTGTCAGCTAAACATGAGCTGCTCCGTGTTCAAGATCACCTCGCCCTTGCTGAGAAGATACGAGTCTGATGAGTGAAGTCCTGGGCCACAGAAAATGGCATGTGTGAAAATGGCATGTGTGAAGGGGCTTTATAGGCAAAAAGGAGCTGAAGTCAGTTTTGGCCTCAACGCTATAAACATGGCAAGGGACcaaagaatgaaacaaaagaagaacaaaaaggaAGTTTTTAATAATCATTGCTATTCCCAAGTTTCTCTTTAACAAGAACTGCCCATTTGATTAAAACTATTGCTGTGCTTAGGGATGTTTGTTGTACCTGTGTGTCCTATGTTCCATTTTGAATGAGGTTATTGTGTGCAGTTTATCATCTAAAATGTACAAGTGTTTCCACTTAAAACTCCCACTTTGTTAGTtgaggcatatatatatatatatatttttttgtctcttagTATGTCATCTGGTCTTGTGCGCCAGCACAGCacttatattttctttcttgtatTGAAAGTTTCGTTGCTATTGCATTAGGAGCAATGATAAATGTTCAGTGACAATGAGCTCTGAATTAAGATGGTTTTAGATAATAGCAATTGAGGCCACTTTCTGATCGATTTTGTCCTTGCTTTCTGTATTTATCTGTGATGGCATGTCTATCTTTCAGCATCTATCAGCATgtctatcttttttttgtcattctgtAGTTTTAGGTTTATTGTGGACTGTATTTACAAAtgattttacatgttttaattgTAGTTTAATAGTAGTTTTCTATCCAGGTTATCCACctaagaaaggaagaaaatgacTTTAAATTGCTTCCTGTATCCACACTACACTAGccagaatatatttttgtaaaaagttAAGTCCATTCACAAACTATGACAGACTGTAGTTATTGAATAAGCACCTGAGGACCTGGGTCATTTGTGCCTGTGTGCACATGCCATGTGCACATGTAGCAACTAAATCACTGTAATAGGGACACTGTAATCTGTAATAGTTGTGGTATTGAGTATGTGGCTGGGATGCACAGCATTATGAACACCATTTCTTTACTTTCCCAATGTTGAAAGTAGCATCATcaagaaaaaacacacttagCCACTGTTAATGTAAGAGTTCCTCTTATTGTACACCACATAAGgcaatattaaacaaaaaaaaaattacagtatgaTAAGCTACCCtattttggaaatgccagtcagcctacaccATGTCTTTTTCAAAAATTCCCCTCAAGTTTTCATGGCATAAATCACGACGTAATTCCTCATTGTAACAAgttctgaaataataaaaatcccaTTAAAGTAAAATCCCCAGAACTATTCTTTGA

Function

symbol description
lztfl1 Acts upstream of or within negative regulation of smoothened signaling pathway. Located in cytoplasm and nucleus. Is expressed in several structures, including gill; integument; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 17. Orthologous to human LZTFL1 (leucine zipper transcription factor like 1).

NR:

description
leucine zipper transcription factor-like protein 1 isoform X2

GO: NA

KEGG:

id description
K19400 LZTFL1; leucine zipper transcription factor-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938034.2 True 2459 mRNA 0.41 10 10440961 10477542
XM_026938035.2 False 2441 mRNA 0.40 10 10440961 10477542
XM_026938036.2 False 2298 mRNA 0.40 10 10441309 10477542
XM_026938037.2 False 2359 mRNA 0.41 9 10440957 10477542

Neighbor

gene id symbol gene type direction distance location
tmx3b tmx3,LOC107693466 coding upstream 14521 10345323 ~ 10426436 (+)
LOC113541200 dnajc13 coding upstream 99056 10182791 ~ 10341901 (+)
sycp2l sycp2l,LOC108261788 coding upstream 878768 9510608 ~ 9562189 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 989614 9438298 ~ 9451343 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding upstream 1025575 9400242 ~ 9415382 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 71186 10548728 ~ 10552018 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding downstream 333064 10810606 ~ 10828391 (+)
pxdc1b pxdc1,LOC103040287,LOC107728142,LOC107554723 coding downstream 364141 10841683 ~ 10860448 (+)
myrip myrip,LOC107724561 coding downstream 644853 11122395 ~ 11308612 (+)
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding downstream 892721 11370263 ~ 11374505 (+)
G330040 NA non-coding upstream 66900 10362531 ~ 10374057 (+)
G329976 NA non-coding upstream 160990 10213263 ~ 10279967 (+)
G329975 NA non-coding upstream 228527 10209923 ~ 10212430 (+)
G329964 NA non-coding upstream 254020 10174629 ~ 10186937 (+)
G329949 NA non-coding upstream 276837 10163919 ~ 10164120 (+)
G330052 NA non-coding downstream 5787 10483329 ~ 10483668 (+)
G330056 NA non-coding downstream 42349 10519891 ~ 10520607 (+)
G330059 NA non-coding downstream 55929 10533471 ~ 10533787 (+)
G330063 NA non-coding downstream 97347 10574889 ~ 10575096 (+)
G330121 NA non-coding downstream 267693 10745235 ~ 10745444 (+)
G330038 NA other upstream 8093 10431333 ~ 10432864 (+)
cdh19 LOC108256684 other upstream 502489 9856182 ~ 9938468 (+)
G329779 NA other upstream 648224 9791684 ~ 9792733 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other upstream 753466 9621679 ~ 9687491 (+)
bmp6 bmp6 other upstream 1518164 8851404 ~ 8922793 (+)
gli3 gli3,LOC108444237 other downstream 117588 10595130 ~ 10768360 (+)
acad11 acad11,LOC107715568,LOC104947469 other downstream 396667 10874209 ~ 10984209 (+)
G330257 NA other downstream 495722 10973264 ~ 10974915 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other downstream 1239873 11717415 ~ 11748559 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other downstream 1584790 12062332 ~ 12156787 (+)

Expression


Co-expression Network