ackr4b (ackr4)


Basic Information

Item Value
gene id ackr4b
gene name ackr4
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10923126 ~ 10930775 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938042.2
cacacaccactacaaaACTGCTATTATCCATTTAGCTTTCCATTCCATCGCTGGTCTCTCTCTGGCTCCCAGATTGAAAGTGTACCAGTGACAGACGCAAACACACTGAAGaaCATTATGAGCTTCTATTCAGACTACAACTTTCATGAGAATTACCATGACCATGACCATTACAATGATAGCTCAAACCACAGCTACTATGATGAGGACTTTGAAGACTACTACACTGTGTGTGACAAATCGGATGTCCGCTCTTTTGCTGGTCTCTTCCTCCCAGTGGTCTATAGCCTAGCACTTGTGGTAGGCCTGGCTGGAAACTCCATGGTTGTATTTGTCTATCTATCCCAGAAGTGCCTACGGACATTAACAGATGTCCTCATCCTTAACCTGGCCTTTGCggacctcctcctcctcttcacaCTCCCGTTCTGGGTGGCAGATGCTGTAAACGGCTGGGAGATTGGTGTGGTGGCCTGCAAGATAACCTCAGCCCTCTACACCACCAACTTCAGTTGTAGTATGCTTCTGCTAGCCTTAATTAGCATGGATCGATACCGAGCTCTTGCCCAGAGCTCCAGCAATTATGCCAGACCACCTGGAAACAAACCAAGGAGACAGATGCTGCTACTGTCCCTCCTGGTCTGGATTGCAGCCTTCGTGTTCGGCTTGCCAgattttttcctcaccaccgtcaagCAGCACTCCTCTGGACACAAATCCTGCAGGGCAGTGTACCCACATAGTATGGCAAAAGCAGCAAAAGCCAGCTTGGAAGTTCTAGAGGTGTCACTGAGCTTCCTGCTACCCTTCCTTGTGATGATGTTCTGCTATTACCGCGTGGGAAAAACCCTGAGTCAGGCAGCAACAACTGGAATGAGAGAAGTACGGAAGTGGAAGGCCTTCCGGGTCCTGATAGCTGTTGTGGGGGTGTTTCTGTTGACACAGTTGCCATATAACATTGTCAGGATTATACGAACCCTAGACATCATCTACGCTTTGGTGACAAACTGTGAGGTCAGTAAAGGACTGGATCGGGCCACTCAAGTCACAGAGAGCTTGGCACTCACACACTGTTGTCTAAACCCTGTTCTATACGTCTTCATTGGCTCATCCTTCAAGGTGCACATGCTAAAGCTTGCTAAGCGATGTGGACAGACTGGGAGGCACCGTGATCAGCAAAACAGGCAACCTGCAATGGAAATTGCACTAAAATCACGGACCCGCACAAACAGCAATGCATACTCAGAATCAGACGAGGAACATACAAGTACTTTTTCTATCTAGCGCACAGACCTGATGACCAGGGACCAAAGACTGCATTATATATAATGCAAATATGCTacattaaaagcatttaaataatggAAAGACCAGTTCTCctatttaaaatttgttataGATACTAAACTGAGAGCACTGCTGACCCAGATTTACATTGTGCTTTTCAGATTCTAATTAATACAAGAGTAAAGGTAAGTTTTTTCTCTAAACTTTGATAGACATCAATATTCATAATTATAAACCCATtctgaatataatatattatatggcTTTGGGGAAAAATCAGTACATTATTCAGACTTGAGCAGATGGGTCAGATCAGAAGTGGAGCACAACTTCCTCTTTTTTGTTGATCtttatataattacaatataatattataatgagtTGAGTTCCTGCATTGTGACCATGAACACATGTGGCTCTGTAGACGTATGTTACTTGACAATTTTAGGAATTAAATGGGTCAGGGTCTGATACAATTTCCATAGTACTGGCTGGTTAAGCTGGTTTTCATGATTGCAGCTTCTAGTAAGCAGTTCGCAGTGGCACAGCTGCTAATTTTATTATGCCCTCCTGTACTTTGTTCTCCTCTGCTGTTATATATTAATTTCTGCTTATTTTCATGAAAGGTGTCAATAAGTCACCGAAGGGCACTGTTTACAAAATCTCCAACCAACAAACCCAGCCTGCAACAAAAATCTGTTTGACTTGCGATATCCATCTGTTAAGTTTGAAATAGCCATCTTGTGAGTTATAGTTTCCTTAGTGTTTAGTGGAAATAAAGCTGGTTCTAGTTTCTCATTGTTAAACAGAAATAGTGACAAATGCATACATGTGGTGCGAGTGAGTCAGACTCGGAAAGaaaattagcaaagaaaaaagcagctaatttttttaatgtagtggcatctgtgtttactgtgtgaACTCATACGTGTGATCATACATGCTTCATTTAATTCTTTACACTAAAAGAAGGATATTTACTATGAGTCAACAAATACACTCTTATAGCCAATGCCTACATTTTCTGAAATAGGAATGTAAAACATCTTAGTAGAAAAGTGATATAGCagggaaagttgtttttttttgcatatgatcaaaatattaaaaatcagaattatttgcattttggtTAGTGGAGTTCAAAAAGTCATTCTGCTGTGGACAGCAGTAAAACAATAGGGACATTGCCAGAAATAGTCTAAAGAGAATATTTAGAAGAGAACATAATAGAGTATGAAGGCTTGCTCCCGGTAAGAGGGTGATACATATGTCTTGGCCTCACACATTACAGGGTGAGGACTAACAGATATCAAAACATTAACTAGAAAATccagacttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaaatataaaaaaaaatggctaattAATTTTGCACTAGTACACATAACCTGTCCAAAATAGTTCAGTGAAATTTCATAGTATGAATGACTCTTcttcagttttattatttctattaaaaaatgtcatgctttaactgtgttcttgtgtgtgtgttaggggggGGTTATGGGGAAGCTGTAAAGAGGACTGGACTAAGTCTATTTTTAGTATCTTACATATTGTCTTTTTACTAGTCATTGTTGTCTGTCATTATATTGTGTTTCTGTATATTTGCATCAAAGAAAAAGTAATTTCCGACTTGGCCTTCctacaaaataacaataatttattattaactttatacACCAAAGTAAGAAAGCTAAACCTAACTTTCAATGTTAGTTAACTACCACTCTAAATGGTGCT
>XR_003404157.2
cacacaccactacaaaACTGCTATTATCCATTTAGCTTTCCATTCCATCGCTGGTCTCTCTCTGGCTCCCAGATTGAAAGTGTACCAGTGACAGACGCAAACACACTGAAGaaCATTATGAGCTTCTATTCAGACTACAACTTTCATGAGAATTACCATGACCATGACCATTACAATGATAGCTCAAACCACAGCTACTATGATGAGGACTTTGAAGACTACTACACTGTGTGTGACAAATCGGATGTCCGCTCTTTTGCTGGTCTCTTCCTCCCAGTGGTCTATAGCCTAGCACTTGTGGTAGGCCTGGCTGGAAACTCCATGGTTGTATTTGTCTATCTATCCCAGAAGTGCCTACGGACATTAACAGATGTCCTCATCCTTAACCTGGCCTTTGCggacctcctcctcctcttcacaCTCCCGTTCTGGGTGGCAGATGCTGTAAACGGCTGGGAGATTGGTGTGGTGGCCTGCAAGATAACCTCAGCCCTCTACACCACCAACTTCAGTTGTAGTATGCTTCTGCTAGCCTTAATTAGCATGGATCGATACCGAGCTCTTGCCCAGAGCTCCAGCAATTATGCCAGACCACCTGGAAACAAACCAAGGAGACAGATGCTGCTACTGTCCCTCCTGGTCTGGATTGCAGCCTTCGTGTTCGGCTTGCCAgattttttcctcaccaccgtcaagCAGCACTCCTCTGGACACAAATCCTGCAGGGCAGTGTACCCACATAGTATGGCAAAAGCAGCAAAAGCCAGCTTGGAAGTTCTAGAGGTGTCACTGAGCTTCCTGCTACCCTTCCTTGTGATGATGTTCTGCTATTACCGCGTGGGAAAAACCCTGAGTCAGGCAGCAACAACTGGAATGAGAGAAGTACGGAAGTGGAAGGCCTTCCGGGTCCTGATAGCTGTTGTGGGGGTGTTTCTGTTGACACAGTTGCCATATAACATTGTCAGGATTATACGAACCCTAGACATCATCTACGCTTTGGTGACAAACTGTGAGGTCAGTAAAGGACTGGATCGGGCCACTCAAGTCACAGAGAGCTTGGCACTCACACACTGTTGTCTAAACCCTGTTCTATACGTCTTCATTGGCTCATCCTTCAAGGTGCACATGCTAAAGCTTGCTAAGCGATGTGGACAGACTGGGAGGCACCGTGATCAGCAAAACAGGCAACCTGCAATGGAAATTGCACTAAAATCACGGACCCGCACAAACAGCAATGCATACTCAGAATCAGACGAGGAACATACAAGTACTTTTTCTATCTAGCGCACAGACCTGATGACCAGGGACCAAAGACTGCATTATATATAATGCAAATATGCTacattaaaagcatttaaataatggAAAGACCAGTTCTCctatttaaaatttgttataGATACTAAACTGAGAGCACTGCTGACCCAGATTTACATTGTGCTTTTCAGATTCTAATTAATACAAGAGTAAAGGCTTAAGGATCAGTGGACATGTGAAACCACACTAAAGACTTCATTATAGGGCCACTTGGATGGCGTGATAAAGAACACTGGAAGGGTTTGGAAGTGACTGCATACAAAAAGGAGGTAAGGGAGGATACTGTTGGACCCTGAAGAGTTTAAAGGCAAGAACGTGGGAAAAGGATGACAAAACAGCTCAAAagtttttagGTCTGGTTTGTTTtctcagcctaatgatggcctccttcacttgcatcgacacctctttggactgcatattg

Function

symbol description
ackr4 Enables chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Predicted to be active in external side of plasma membrane.

NR:

description
atypical chemokine receptor 4-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938042.2 True 3085 mRNA 0.40 2 10925547 10930775
XR_003404157.2 False 1741 misc_RNA 0.46 4 10923126 10930775

Neighbor

gene id symbol gene type direction distance location
LOC113541360 NA coding downstream 638189 10284834 ~ 10284937 (-)
LOC113532851 NA coding downstream 1103593 9796334 ~ 9819533 (-)
mppe1 mppe1 coding downstream 1205560 9687555 ~ 9717566 (-)
elovl2 elovl2,LOC101268971 coding downstream 1350921 9552595 ~ 9572205 (-)
gcm2 gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 coding downstream 1412937 9504137 ~ 9510189 (-)
si:dkey-12l12.1 NA coding upstream 44999 10975774 ~ 10980139 (-)
LOC113541107 NA coding upstream 175639 11106414 ~ 11109555 (-)
prlh2 prlh coding upstream 377979 11308754 ~ 11310736 (-)
zfand1 zfand1,LOC107739158,LOC107681457,LOC107554718 coding upstream 424397 11355172 ~ 11368763 (-)
si:dkey-37o8.1 si:dkey-37o8.1,LOC108256503,LOC108434235,LOC107681461,LOC105019383,LOC103369707 coding upstream 555297 11486072 ~ 11488628 (-)
G330289 NA non-coding downstream 83574 10839130 ~ 10839552 (-)
G330287 NA non-coding downstream 86774 10836089 ~ 10836352 (-)
G330278 NA non-coding downstream 91540 10831371 ~ 10831586 (-)
G330274 NA non-coding downstream 103809 10782106 ~ 10819317 (-)
G330277 prpf4b non-coding downstream 110288 10810669 ~ 10812838 (-)
G330344 NA non-coding upstream 52094 10982869 ~ 10983322 (-)
G330345 NA non-coding upstream 54255 10985030 ~ 10985651 (-)
G330598 NA non-coding upstream 389796 11320571 ~ 11321045 (-)
G330608 NA non-coding upstream 423893 11354668 ~ 11355077 (-)
G330610 NA non-coding upstream 439529 11370304 ~ 11371028 (-)
G330185 NA other downstream 399863 10522732 ~ 10523263 (-)
LOC113541109 NA other downstream 766326 10151497 ~ 10156800 (-)
sec61b sec61b,LOC102796100 other downstream 3536779 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 3860698 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 4539538 6256403 ~ 6383588 (-)
G330379 NA other upstream 151493 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 1013279 11944054 ~ 11996700 (-)
LOC113541288 NA other upstream 1745770 12676545 ~ 12677938 (-)
LOC113541105 NA other upstream 2826883 13757658 ~ 13762615 (-)
LOC113541102 msc other upstream 4002220 14932995 ~ 14937404 (-)

Expression


Co-expression Network