LOC113541204 (LOC108256300)


Basic Information

Item Value
gene id LOC113541204
gene name LOC108256300
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15337379 ~ 15380275 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938050.2
GAGATTCATCACCTGATACCGACAACCTGTGTATAAGCCAGGAACCTCCATCTGTCACTGCATCCTGTATGTGATCAGCAGCTCCTCGGAGGAAAAGacacacacgtacgcacacacacacactgcgctgACGCATACATGCTGGTGATGTGTGTCTCTCGTTTGTACTGCAGTGACACAGAATAATGTTTCCGATGTTTCTGGTCCAGccataaaatgaataaatcactcTCATACCCTGGTCCATACTCTCCCGTGTCGTCTACAATCTCAACATCTCCAatacaggaagaggaggatgaagaccTGAACAAAGCTTTTGGTGTTCAGAGATTTCAGCAGATTCTTAGTCCGACTTCACGTGAACCTAACGAGCACCGACAATACAGCGAGGAGGACTTCCAGTATCATCGTcactcatcacaccacaccCGTCACCCTCTGTCCAAACACACTGATGGCCGGAGAAAGAGAactgggaaaaagaaaaggagtaAAGAGCAACACCTGAGTGATGACCTCAGCGTGCAGgatggagaggaagaggaagaaacaTGCACGGACAAAcctgagagtgagacacaggATGGTGTGCAGTTCTTCCTGTATGATGAAGAGGTTTTCCCTGCTGATGGAGAAAGCACAGCTGAGAACAAAAACGCGCCTACAGAAACACATGAGAGCACCACTGCAGATGGGGAGCTCACACACtctgagactgaaacacacaatgACAACActgtgactgaTTCCACTAAGCACCACGCTGTGACCATCAACGAAAGCTCTGCAACATTTCACCCCAGCACTTTGACCTCATCCAGTCCAACAGGAAACATGACGGGAAATGAGAGCACAAAATATGAGAGGATTCCTGCAGACgaggcagagacacacacacttggctCAGCCAATTTGGATGACATTAAGACTCACCGTTTCGAGGACGTTCCTGGCGTGAGGAGACACCTGGTGAGGAAAAGCACCAAAACTGCCATAGTGCACATCAATAAAGATCATGCGGAGCCGAGCACACGCAGTCGCAAAGTTGACCGCACACCACACGAGGTGTTTGTAGAGCTGAATGAGCTGATCGTAGATAAGAACCAGGAGCTGCAGTGGAGAGAGACAGCACGCTGGATTAAGTTTGAGGAAGACGTGGAGGAGGAAACACACCGCTGGGGGAAACCACACATCGCCTCGCTCTCGTTCCGCAGTTTACTGGAGCTCCGCAAAACCATAGCACAtgGCACAGTGCTGCTGGATCTAGATCAGAAAACGTTAGCTGGAATTTCTCACCAAGTCGTTGAGCAGATGATCATCACTGACCAGATTAGAGCTGAAGACAGAGCGAATGTACTAAGAGCACTACTGCTGaaacacagTCACCCGTGTGATGAGAAAGATCACAGCTCGTTCCCCAGAAACATCTCAACAGCCAGTCTGGGTTCATTAATctctcatcatcaccatcaccatcaccatcatcatcatcctcatcctcatcagaCAGAGACGTCCGTCACCGAGCCACTGATGgggaacacaaacacaaaacacgacaacacacagcacacacaaccTGACACAGTTGAGAAAGAACCAACTGCAGCTGCTGGCATGCACAGATCTAAATCTAAACACGAGCTCAAACTGCTGGAGAAAATTCCAGAAGATGCAGAAGCCACTGTGGTACTTGTGGGCAGCGTTGATTTCCTGGACCAGCCCACCATGGCATTTGTGCGCTTGGAGGAAGCTGTGTTACTGGACTCAGTTCTGGAGGTTCCGGTTCCTGTGAGGTTCCTCTTCATCTTACTTGGACCAAACAACTCCAGCATGGACTACCACCAGATCGGACGCTCAATTTCCACGCTGATGTCTGATAAGTCGTTCCATGAAGCTGCGTATCTGGCTGATGATCGTCAAGACCTTCTAAACGCCATCAACGCTTTCCTGGACTGCAGCATTGTTCTTCCTCCATCTGACTTTGGGGGCGAAGACCTGCTGCGCTCCATCACTCACTTCCAGAGAGATATGATCAAAAAACGAGAGGAACAGGATATCAGCATGATGAACAATGAACAAAAGAGCCCAGAGGAGAAAGAATCTCTGTTGGCACGCCATGAccgtggtgatgatgatgatgacccCCTGAAGCGATCAGGTCGGCCGTTTGGAGGTTTAGTCCGAGACGCACGACGAAGATACCCAAAATACATCAGTGACTTCACAGATGCTCTGAACCCACAATGCATGGCGgccattatatttatttatttcgcTGCTCTTTCTCCTGCTATCACATTCGGAGGGCTGCTGGgtgaGAAGACAGAGGGTCTGATCGGTGTGTCAGAGCTCATCATTGCTACATGTATTCAGGGAGTGATATTTTGCCTATTGGGAGCACAACCACTGCTGGTAGTCGGATTCTCCGGGCCGTTATTAGTGTTTGAGGAAGCCTTCTTTACCTTCTGTAAGAGTAATGATGTGGAGTACCTGGCGGGTCGGGTATGGATTGGGTTCTGGCTCATCATAATCGTGGTGCTCATGGTAGCATTTGAGGGAAGCTTCCTGGTTCGATTCGTCTCTCGTTTCACTCAGGAGATTTTCTCTTTCCTAATCTCACTCATCTTCATCTACGAGACCTTCTCCAAACTCATCAAGATATTTAAGGAACACCCACTGAAACGCTGCTCACTCCTCAACGACTCCATGTTTAACGACTCTGAGACCTCACTGGTAGAGAATTTCACATTGAACTCATTAGCATCAAACAGCAGCTCGAAGGTAAAGGAGAAGATTGTCGGAGAGCCGAACACAGCACTGCTTTCTCTGGTTCTCATGGCTGGAACATTCTTCATTGCGTTTTACCTGCGCAAATTCAAGAACAGCGCCTTCTTTCCAGGCAGGCTGAGGAGGGTCATTGGAGATTTTGGCGTTCCCATCGCCATCTTCATTATGGTGCTGGTGGATTACACTGTTCAggatacatacacacaaAAGCTGAGCGTTCCTCATGGTTTCTCTGTGACGAGCCCTAGTAAAAGAACCTGGATTGTGAATCCTCTCGGCGCTTACAAGTCATTTCCTGTATGGATGATGGCAGCCAGCGTACTTCCTGCACTCCTAGTgtttattctcatttttatgGAGACACAAATCACCACgCTGATCGTGAGTAAAAAGGAGAGAATGCTGGTTAAAGGTTCAGGTTTTCACCTGGACCTtctgttgattgtgtgtgttggtggaaCCTGTGCTTTGTTTGGTTTACCGTGGATGGCGGCTGCGACTGTTAGGTCCGTCACGCATGTTAATgcgctaactgtgatgagtaaTGCTGTTGCCCCTGGTGATAAGCCCCGAATTCAAGAGGTCAAAGAGCAAAGAGTCACGGGACTGTTGGTGGCCGTGTTAGTGGgtctctCTATCGTGATTGGTGAAGtgttgagtctgattcctctcgcTGTGCTCTTTGGGATTTTCCtctatatgggtgtgatgtcaCTCAATGGCATTCAACTCAGTGAAAGAATCAAACTGCTGCTAATGCCAACTAAATACCACCCCGACGAAATCTATGTCcgcaaggtgCGGACACTGCGCATGCATCTCTTCactggggtgcagttggtgtgTTTGGCCATTTTGTGGGTGGTCATGTCGACAGCAGCGTCACTCGCTTTCCCCTTCGTCCTCATTCTGACTGTCCCGCTAAGAATGTTCGTTTTACCACGGATTTTCAACTCACGCgagatgcagtgtCTTGATGCAGACGATGCCGAGCCCACCTTCGATGAGAAAGAGGGAGTGGACGAGTACACAGAGATGCACATGCCTGTGTGATACTCACCTACACTTATTACACTCAtcttctctctgtccatccacccATGGTGGGATTTCACAGCCAGGGGAAATCGGAGTGAAGAAAGCGCTGCTGTTCAGTTTTAAGCTCAAAGAGGCATTGCTGAGCGCAAAAACCCAGAGTTAAAATGTCCAGTTCAACTCGTGCTTTGTTGCCATGCCaacaatacatttatatattgaaTTGAGAAATCAATTTGactcaaaaaaacacaacaaacgaGTCAGTGCACAAAAGTATTACGatgtaatacataaatattagctattgtgaaaataattaatgaattttaatatattgcaaTCTATTCAAATCTAATTTTATGATCATGTTGattaagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttaaatCGGTAACTCTATGGATACAgatgaataatgtgtgtgtactttatTCCGTTAGAATTATTTACACCCTTGATGCCAAATTAGCTGTGTTACTCCTTTGTTGCCAATAATAAGGAAATTGTTAGTAGTTTGGTTTGTAAGTTagcaaacaaatgaatcatAATGAATTAGCCGTAGACATAGTTTTGGTGCAGGACCCCATCCCTCAAACACCAGTAATATGTGACCAAAATATCCCggtggtttcattttttttttttttttaataaagagtgTTTTAATAGAATTCAGctaaagttcattttaaaattttagacAATTATGGTTTAATATATCGGTAGCTCGTCTAGAATCAGTGATCTTTTTCATATAATGTTACTATAGCATAACACGGTTACTTAATTTTCCTAGTTTTTGCAAGACAAAGATTGCCTAAACCAAAGATAAGATGGGTTTATGTGACAATGTAAGACACTGTCAGTATTTTGTTGCTGatacaaaattacaaacattAATGAGGAAGATACAGTACAATGCTGCAGCCATCCAATGGTAGTTTATTAGTAATATCTAGCATAGCCTGCTAGTTTAGTCTAAGTTTCTCATCTAACTTAGGCtaaaattagtaataaataataatgcgtAATGAAAGTGCCTCTGAAATTGTGTTGTGACGCGACATTATAGCTAGCAGAATTGAAGTTTCTCATCTAACTTAGGCTAAAATTAGTATTACATAATAATGTTTAACAAGAGTGCCTCTGAAATTGTGTTGTGATGCTATATTATAGCTAGCAGAAAGGAGAAGTATTCAAAGTAAGAAAATTTTGCATACTGAATTACATTCTTAATGTAATGaaccatgaaaataaaaaataaccttatagataatataaaacaattctAATGCCATGTGACTCATAGTATGATTCAAAAATTAATAGAAGCCCACGACACTATGTTTTCTATCTAACTAGCAACGTATCTAACactgtgtttttaatcatttattagcATAATGCTAATTAAAGAAGAACAGTATTCACCACTTCTGTTGTTTTTCGGTTAAGTATTTCACTGAGTGGGTAAAAGAGAGTGAGGTTGCGTATGATAGTCAGCTGTACTACATTGACAGGAAAGAGAAAGGTGCCAGTGCACTGACTGAGGTGATTCCCACTGCTGAGCGGTTTTCCCAGATGTAACCCGAAAACCCTTTCCAACCCATTCAAGTTACAGTGTTAGCTGTCCAGGTTATGTAGCTAATGTTTAGTTCTTACAGTGATAGCCcttcaatttatttaataccttactttatttaatactttactTTACAGAGTGAtactaagctagctagctatttagttACTTATTTTTAACTCTCCACGAATCCCTTCGTTGTAACGCTATCTAGCTTTTCAGGTCCACTAATCacacaagataaaaaaatgtatactaATAACAacaattgttatttttttattttttatttatgcaagGGAATCATGTTGGTGAAAGATAAGTATATGatctttaattttaataaatctgtttattaacaTACTaggtattttattttctcttgtcggttttagtattaatataattcgttgtgttttttttaattatataataatgaaatgtacatttcttcctgttttgttgatgttataaataaatatgtcatTCTTTTCAGTCTCATGCA
>XM_026938052.2
ttggaaacgTTCAGTACAGTATATGGTTTAgagttttattaaaactgtatcCTCCAGCTCAAATCATGTAGTGAAGTTGCATAAATgttcagtaagtgtgtgttaaagggAAACGTGTGTGTGGTTGGTCACTTTGCTGTTTTTGAAGACGAGAAATGGATTTTCTTTACACACAGCCCGTGTCGTCTACAATCTCAACATCTCCAatacaggaagaggaggatgaagaccTGAACAAAGCTTTTGGTGTTCAGAGATTTCAGCAGATTCTTAGTCCGACTTCACGTGAACCTAACGAGCACCGACAATACAGCGAGGAGGACTTCCAGTATCATCGTcactcatcacaccacaccCGTCACCCTCTGTCCAAACACACTGATGGCCGGAGAAAGAGAactgggaaaaagaaaaggagtaAAGAGCAACACCTGAGTGATGACCTCAGCGTGCAGgatggagaggaagaggaagaaacaTGCACGGACAAAcctgagagtgagacacaggATGGTGTGCAGTTCTTCCTGTATGATGAAGAGGTTTTCCCTGCTGATGGAGAAAGCACAGCTGAGAACAAAAACGCGCCTACAGAAACACATGAGAGCACCACTGCAGATGGGGAGCTCACACACtctgagactgaaacacacaatgACAACActgtgactgaTTCCACTAAGCACCACGCTGTGACCATCAACGAAAGCTCTGCAACATTTCACCCCAGCACTTTGACCTCATCCAGTCCAACAGGAAACATGACGGGAAATGAGAGCACAAAATATGAGAGGATTCCTGCAGACgaggcagagacacacacacttggctCAGCCAATTTGGATGACATTAAGACTCACCGTTTCGAGGACGTTCCTGGCGTGAGGAGACACCTGGTGAGGAAAAGCACCAAAACTGCCATAGTGCACATCAATAAAGATCATGCGGAGCCGAGCACACGCAGTCGCAAAGTTGACCGCACACCACACGAGGTGTTTGTAGAGCTGAATGAGCTGATCGTAGATAAGAACCAGGAGCTGCAGTGGAGAGAGACAGCACGCTGGATTAAGTTTGAGGAAGACGTGGAGGAGGAAACACACCGCTGGGGGAAACCACACATCGCCTCGCTCTCGTTCCGCAGTTTACTGGAGCTCCGCAAAACCATAGCACAtgGCACAGTGCTGCTGGATCTAGATCAGAAAACGTTAGCTGGAATTTCTCACCAAGTCGTTGAGCAGATGATCATCACTGACCAGATTAGAGCTGAAGACAGAGCGAATGTACTAAGAGCACTACTGCTGaaacacagTCACCCGTGTGATGAGAAAGATCACAGCTCGTTCCCCAGAAACATCTCAACAGCCAGTCTGGGTTCATTAATctctcatcatcaccatcaccatcaccatcatcatcatcctcatcctcatcagaCAGAGACGTCCGTCACCGAGCCACTGATGgggaacacaaacacaaaacacgacaacacacagcacacacaaccTGACACAGTTGAGAAAGAACCAACTGCAGCTGCTGGCATGCACAGATCTAAATCTAAACACGAGCTCAAACTGCTGGAGAAAATTCCAGAAGATGCAGAAGCCACTGTGGTACTTGTGGGCAGCGTTGATTTCCTGGACCAGCCCACCATGGCATTTGTGCGCTTGGAGGAAGCTGTGTTACTGGACTCAGTTCTGGAGGTTCCGGTTCCTGTGAGGTTCCTCTTCATCTTACTTGGACCAAACAACTCCAGCATGGACTACCACCAGATCGGACGCTCAATTTCCACGCTGATGTCTGATAAGTCGTTCCATGAAGCTGCGTATCTGGCTGATGATCGTCAAGACCTTCTAAACGCCATCAACGCTTTCCTGGACTGCAGCATTGTTCTTCCTCCATCTGACTTTGGGGGCGAAGACCTGCTGCGCTCCATCACTCACTTCCAGAGAGATATGATCAAAAAACGAGAGGAACAGGATATCAGCATGATGAACAATGAACAAAAGAGCCCAGAGGAGAAAGAATCTCTGTTGGCACGCCATGAccgtggtgatgatgatgatgacccCCTGAAGCGATCAGGTCGGCCGTTTGGAGGTTTAGTCCGAGACGCACGACGAAGATACCCAAAATACATCAGTGACTTCACAGATGCTCTGAACCCACAATGCATGGCGgccattatatttatttatttcgcTGCTCTTTCTCCTGCTATCACATTCGGAGGGCTGCTGGgtgaGAAGACAGAGGGTCTGATCGGTGTGTCAGAGCTCATCATTGCTACATGTATTCAGGGAGTGATATTTTGCCTATTGGGAGCACAACCACTGCTGGTAGTCGGATTCTCCGGGCCGTTATTAGTGTTTGAGGAAGCCTTCTTTACCTTCTGTAAGAGTAATGATGTGGAGTACCTGGCGGGTCGGGTATGGATTGGGTTCTGGCTCATCATAATCGTGGTGCTCATGGTAGCATTTGAGGGAAGCTTCCTGGTTCGATTCGTCTCTCGTTTCACTCAGGAGATTTTCTCTTTCCTAATCTCACTCATCTTCATCTACGAGACCTTCTCCAAACTCATCAAGATATTTAAGGAACACCCACTGAAACGCTGCTCACTCCTCAACGACTCCATGTTTAACGACTCTGAGACCTCACTGGTAGAGAATTTCACATTGAACTCATTAGCATCAAACAGCAGCTCGAAGGTAAAGGAGAAGATTGTCGGAGAGCCGAACACAGCACTGCTTTCTCTGGTTCTCATGGCTGGAACATTCTTCATTGCGTTTTACCTGCGCAAATTCAAGAACAGCGCCTTCTTTCCAGGCAGGCTGAGGAGGGTCATTGGAGATTTTGGCGTTCCCATCGCCATCTTCATTATGGTGCTGGTGGATTACACTGTTCAggatacatacacacaaAAGCTGAGCGTTCCTCATGGTTTCTCTGTGACGAGCCCTAGTAAAAGAACCTGGATTGTGAATCCTCTCGGCGCTTACAAGTCATTTCCTGTATGGATGATGGCAGCCAGCGTACTTCCTGCACTCCTAGTgtttattctcatttttatgGAGACACAAATCACCACgCTGATCGTGAGTAAAAAGGAGAGAATGCTGGTTAAAGGTTCAGGTTTTCACCTGGACCTtctgttgattgtgtgtgttggtggaaCCTGTGCTTTGTTTGGTTTACCGTGGATGGCGGCTGCGACTGTTAGGTCCGTCACGCATGTTAATgcgctaactgtgatgagtaaTGCTGTTGCCCCTGGTGATAAGCCCCGAATTCAAGAGGTCAAAGAGCAAAGAGTCACGGGACTGTTGGTGGCCGTGTTAGTGGgtctctCTATCGTGATTGGTGAAGtgttgagtctgattcctctcgcTGTGCTCTTTGGGATTTTCCtctatatgggtgtgatgtcaCTCAATGGCATTCAACTCAGTGAAAGAATCAAACTGCTGCTAATGCCAACTAAATACCACCCCGACGAAATCTATGTCcgcaaggtgCGGACACTGCGCATGCATCTCTTCactggggtgcagttggtgtgTTTGGCCATTTTGTGGGTGGTCATGTCGACAGCAGCGTCACTCGCTTTCCCCTTCGTCCTCATTCTGACTGTCCCGCTAAGAATGTTCGTTTTACCACGGATTTTCAACTCACGCgagatgcagtgtCTTGATGCAGACGATGCCGAGCCCACCTTCGATGAGAAAGAGGGAGTGGACGAGTACACAGAGATGCACATGCCTGTGTGA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006820 anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function

KEGG:

id description
K13855 SLC4A2, AE2; solute carrier family 4 (anion exchanger), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938050.2 True 5968 mRNA 0.43 24 15337379 15380275
XM_026938052.2 False 3770 mRNA 0.48 22 15339501 15370567

Neighbor

gene id symbol gene type direction distance location
LOC117595668 NA coding downstream 48614 15285508 ~ 15288765 (-)
LOC113541332 NA coding downstream 53224 15276583 ~ 15284155 (-)
LOC117595763 LOC108256304 coding downstream 62303 15273126 ~ 15275076 (-)
LOC117595804 NA coding downstream 68115 15267358 ~ 15269264 (-)
rdh10a rdh10a,rdh10,LOC108256305,LOC107560263,LOC107725699,LOC107754204,LOC107657826,LOC107696016 coding downstream 92354 15229216 ~ 15245025 (-)
LOC113541141 LOC108256549 coding upstream 18006 15398281 ~ 15414443 (-)
LOC113541144 cntnap2,cntnap2a,LOC108256478,LOC108256479,LOC108256453 coding upstream 36829 15417104 ~ 15559455 (-)
LOC113541101 NA coding upstream 199000 15579275 ~ 15582034 (-)
LOC113541299 cntnap2,cntnap2a,LOC108256479,LOC108256478,LOC108256453 coding upstream 396746 15777021 ~ 15899598 (-)
LOC113541324 LOC108256119 coding upstream 716706 16096981 ~ 16115913 (-)
G332196 NA non-coding downstream 540181 14714217 ~ 14797198 (-)
G332164 NA non-coding downstream 702453 14544032 ~ 14634926 (-)
G332147 NA non-coding downstream 772675 14537252 ~ 14564704 (-)
G332169 NA non-coding downstream 814764 14513735 ~ 14522615 (-)
G332056 NA non-coding downstream 870766 14466394 ~ 14466613 (-)
G332637 NA non-coding upstream 185912 15566187 ~ 15566646 (-)
G332676 NA non-coding upstream 240231 15620506 ~ 15620717 (-)
G332682 NA non-coding upstream 249948 15630223 ~ 15630444 (-)
LOC113541266 NA non-coding upstream 555553 15935828 ~ 15943189 (-)
LOC113541293 NA non-coding upstream 598841 15979116 ~ 15985108 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 271569 14962837 ~ 15065810 (-)
LOC113541102 msc other downstream 399975 14932995 ~ 14937404 (-)
LOC113541105 NA other downstream 1574764 13757658 ~ 13762615 (-)
LOC113541288 NA other downstream 2659441 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 3340679 11944054 ~ 11996700 (-)
sec61g NA other upstream 235223 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 900996 16281271 ~ 16312916 (-)
oxsr1b oxsr1,oxsr1b other upstream 1449515 16829790 ~ 16879884 (-)
myd88 myd88 other upstream 1504876 16885151 ~ 16889424 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 1735823 17116098 ~ 17139685 (-)

Expression


Co-expression Network