Item | Value |
---|---|
gene id | flt1 |
gene name | flt1 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047616.1 |
NCBI id | CM018562.1 |
chromosome length | 21037487 |
location | 17784153 ~ 17810295 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
flt1 | Predicted to enable transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within blood vessel development; establishment of left/right asymmetry; and regulation of heart contraction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in angioblastic mesenchymal cell; brain; cardiovascular system; endothelial cell; and somite. Human ortholog(s) of this gene implicated in Kuhnt-Junius degeneration; diabetic retinopathy; and pre-eclampsia. Orthologous to human FLT1 (fms related receptor tyrosine kinase 1). |
description |
---|
PREDICTED: vascular endothelial growth factor receptor 1-like isoform X1 |
id | name | namespace |
---|---|---|
GO:0002040 | sprouting angiogenesis | biological_process |
GO:0006468 | protein phosphorylation | biological_process |
GO:0001570 | vasculogenesis | biological_process |
GO:0048010 | vascular endothelial growth factor receptor signaling pathway | biological_process |
GO:0008016 | regulation of heart contraction | biological_process |
GO:0005887 | integral component of plasma membrane | cellular_component |
GO:0005524 | ATP binding | molecular_function |
GO:0005021 | vascular endothelial growth factor-activated receptor activity | molecular_function |
id | description |
---|---|
K05096 | FLT1, VEGFR1; FMS-like tyrosine kinase 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026938068.2 | True | 5096 | mRNA | 0.47 | 30 | 17784153 | 17810295 |
XM_026938071.2 | False | 3171 | mRNA | 0.48 | 11 | 17798921 | 17810293 |
XM_034298110.1 | False | 4790 | mRNA | 0.47 | 29 | 17784153 | 17807231 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
flt3 | flt3 | coding | downstream | 24160 | 17743332 ~ 17759993 (-) |
naa50 | naa50,LOC106579447 | coding | downstream | 57745 | 17720105 ~ 17726408 (-) |
LOC113541196 | usf3 | coding | downstream | 64897 | 17706992 ~ 17719256 (-) |
LOC113541192 | LOC108256613 | coding | downstream | 147773 | 17629473 ~ 17636380 (-) |
LOC113541063 | shisa2 | coding | downstream | 164783 | 17613304 ~ 17619370 (-) |
LOC113541118 | LOC108256139,LOC108442190 | coding | upstream | 5345 | 17815640 ~ 17828279 (-) |
tmprss7 | tmprss7 | coding | upstream | 20997 | 17831292 ~ 17842178 (-) |
spata13 | LOC108256577 | coding | upstream | 39471 | 17849766 ~ 17874941 (-) |
c1qtnf9 | LOC108256147,LOC108442199 | coding | upstream | 66419 | 17876714 ~ 17879197 (-) |
tagln3b | tagln3,tagln3b,LOC108442189,LOC107701685,LOC107705223,LOC107654214 | coding | upstream | 69715 | 17880010 ~ 17883333 (-) |
G333700 | NA | non-coding | downstream | 241801 | 17541846 ~ 17542352 (-) |
G333657 | NA | non-coding | downstream | 394040 | 17389862 ~ 17390113 (-) |
G333656 | NA | non-coding | downstream | 394412 | 17389454 ~ 17389741 (-) |
G333653 | ccdc191 | non-coding | downstream | 398507 | 17385279 ~ 17385646 (-) |
G333652 | NA | non-coding | downstream | 400130 | 17383742 ~ 17384023 (-) |
G333932 | NA | non-coding | upstream | 89544 | 17899839 ~ 17902383 (-) |
G333934 | NA | non-coding | upstream | 92338 | 17902633 ~ 17902855 (-) |
G333939 | NA | non-coding | upstream | 95613 | 17905908 ~ 17906806 (-) |
G333971 | NA | non-coding | upstream | 114196 | 17924491 ~ 17924789 (-) |
G334038 | NA | non-coding | upstream | 218280 | 18028575 ~ 18028834 (-) |
vipr1b | vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 | other | downstream | 545037 | 17185524 ~ 17239116 (-) |
zbtb47b | zbtb47,znf652,LOC108256615 | other | downstream | 644468 | 17116098 ~ 17139685 (-) |
myd88 | myd88 | other | downstream | 894729 | 16885151 ~ 16889424 (-) |
oxsr1b | oxsr1,oxsr1b | other | downstream | 904269 | 16829790 ~ 16879884 (-) |
cpa6 | cpa6,LOC106579545 | other | downstream | 1471237 | 16281271 ~ 16312916 (-) |
LOC113541127 | LOC108256571 | other | upstream | 97289 | 17907584 ~ 17908812 (-) |
c22h11orf65 | c23h11orf65 | other | upstream | 99029 | 17909324 ~ 17916556 (-) |
zmp:0000000991 | NA | other | upstream | 105789 | 17916084 ~ 17931814 (-) |
mybl1 | mybl1,LOC107663687,LOC107590196 | other | upstream | 627219 | 18437514 ~ 18520205 (-) |
pkia | pkia,LOC107666628,LOC107705234 | other | upstream | 1195203 | 19005498 ~ 19015855 (-) |