usp12a (usp12,usp12a,LOC107705210,LOC107584971,LOC107591222,LOC107654221)


Basic Information

Item Value
gene id usp12a
gene name usp12,usp12a,LOC107705210,LOC107584971,LOC107591222,LOC107654221
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17483693 ~ 17492318 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938072.2
GACACAGCCCGCGGTTAGGCTCTGCGATCGGTCCTGACTGGGGACTCGTTTTCGCCTCCGCGCGGTGATTGGGTGGAAGATGGCGCTGGCCGAATGGAAATCCTAATGACAGTTTCCAAATTTGCCTCTTTTTGTACCATGGGCGCCAATGCCTCCGCTTTGGAGAAAGAAATTGGCTCGGAGCAGTTCCCTGTCAATGAGCACTACTTCGGACTGGTTAACTTCGGGAACACCTGCTACTGCAACTCGGTGCTCCAGGCTCTGTACTTCTGCCGGCCGTTTCGGGAGAAGATCCTGGCCTACAGGAGTCAGCCCCGGCGCAAGGAGAACCTGCTCACCTGCCTGGCCGACCTGTTCCACAGCATCGCCAACCAGAAGAGGAAGGTGGGCGTCATCCCTCCGAAGAAATTCATCACACGGCTGCGCAAAGAGAACGAGCTCTTTGATAACTACATGCAGCAGGATGCACACGAGTTCCTCAACTACCTGCTGAACACTATAGCCGACCTGctgcaggaggagaagaagCAGGACAAGCAGAATGGCAAACTGGCCAACGGCACGCTCGATTCACAGAAGAGTAACAGCACTCCTCCGTCCAGCACATGGGTACACGAGATCTTCCAGGGCACGCTGACCAACGAGACGCGCTGCCTCACCTGCGAGACGatAAGCAGCAAGGATGAGGACTTCTTGGATTTGTCTGTGGACGTTGAGCAGAACACTTCAATCACACACTgcctcagGGGCTTCAGTAATACAGAGACCCTGTGTAGTGAATATAAATACTACTGTGAGGAATGTAGGAGTAAACAGGAGGCACACAAAAGGATGAGGGTGAAGAAGCTGCCCATGATTTTAGCCCTGCACCTGAAGAGATTTAAATACATGGAGCAGCTCCAGCGCTACACTAAGCTAAGCTACCGCGTGGTCTTCCCTTTGGAGCTCCGCCTCTTCAACACGTCCGGAGACGCGACCAATCCCGAAAGGCTTTACGACCTCGTCGCCGtggtggtgcattgtgggagCGGGCCCAATCGCGGACACTACATCGCTATCGTCAAGAGTCACGACTTCTGGCTACTTTTCGATGATGACATCGTAGAgAAAATCGACGCCCAGGCGATAGAGGAGTTCTACGGACTTACCTCGGAAATCTCCAAGAACTCTGAGTCAGGCTACATCCTGTTCTACCAATCCAGAGACTGAGATTGTTCAGCACAGCGGCCCCTCGTGGACCCCTGCGGAACGTGCCGGCCTGCGTTTCCGAGTCCTGCTGCGTCCCACCCTGAGCAGGCTGGATCAGATCGCGCTGACCCCCTGACCCTTGACCCCAGCATTCCCCCCGCGGCAGTCCGGATGTGATGCAGTTACAGCGTTGTGTGTACGTCGTGAGAATGTTTAATCGCACTGGCTGAAATGTGTTCAATGTACTCGGCTCTGTGATACTGACAGTCCTGACATGCTGCAACCTTTATAAGCCTGAGTTTCTGACCAAAGGCTTGTGCATGGGAAAATAGGGGGCGTGTCCCGAACAGAGGGGAGGGGCTATAAACTGAACATATGGGGCTATTTGTGGGTTTATGTATTTCTACCTTGTACATAGTGgtatttgtataaatattatgaaattataataatattaattactgATATAGGTGAAAAAGATTGAAACATTGAAAATATGTATAACACTATGGTGCACTTTTGATACCGTTTTGTAGGTGTTTGGCAGGTTTGTGTGAGGGTTTGCTTGAGACAGCCTGTTGTGaaataattttctgttttaaagaaaaagaaataaagtgtaTAGATCGAGTGTAGATGAAGATAAATGTGAGCGTTTTATTGGATTCCATTTAACCCGGTGAAAtcagatttaaacaaaaatatcacatttacacTATTAGTAAAACGTTTGGTGTCTGACGTTTGCGTCTTTAGTTTTGCATATAAAAAGAAGCAGTCACAGATTTGCTGAATCTATCTGTGAGTATGAACAAATCCTCACTGTGTAGTCACtggttttttaattatttatttattttaactttagtGCAGTTTAGTATCACTCTGTCTCCCAAAATGACACCAGGAAGCAGGAAGTTATGCGAATAATAACATAGTTCCTCTTTGAGCTTGTAGAAATATCTATAGGAAAGATGTAGGGTGATAGTCGAGTGCAAAAATTTGTACACCAAAGACAAAATTAAGAAGAGTAGAAATTCTTGTCTTTCATGGATGTATCTTCATTatcacaaaaacacataaatgaaATCAGTATCTTTGTTTCTGAATGTGTTGAATGTTCTCTAGATGTCTTTTGAAACTGTTTTTGGTTGATTTTATGTTGGAGATTGTTGTTGCAGGATTCATGCACATCACATTTTCAGCTTGGtggatttctcttttttttttaataaataggtTAATtcttgttctgttttatttaaaaaaaaaaaaaaaaaaaaaaaaagacag

Function

symbol description
usp12a Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP12 (ubiquitin specific peptidase 12).
usp12 Enables cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Involved in protein deubiquitination. Predicted to be located in nucleoplasm. Predicted to be active in cytosol and nucleus.

NR:

description
ubiquitin carboxyl-terminal hydrolase 12

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938072.2 True 2481 mRNA 0.46 9 17483693 17492318

Neighbor

gene id symbol gene type direction distance location
lnx2a lnx2,lnx2a,LOC107716412,LOC107584972,LOC107701681,LOC107591221 coding upstream 17241 17450723 ~ 17466452 (+)
urad urad coding upstream 48868 17432046 ~ 17434825 (+)
ccdc191 ccdc191 coding upstream 93054 17378301 ~ 17390639 (+)
drd3 drd3 coding upstream 130384 17336192 ~ 17353309 (+)
si:ch211-161h7.8 LOC108256135 coding upstream 150184 17329834 ~ 17333509 (+)
gpr12 gpr12,LOC107701646,LOC107716385,LOC107654195,LOC107705188 coding downstream 3759 17496077 ~ 17503703 (+)
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding downstream 51505 17543823 ~ 17605193 (+)
spice1 spice1 coding downstream 129628 17621946 ~ 17629485 (+)
LOC113541191 cfap44 coding downstream 144065 17636383 ~ 17653613 (+)
boc boc coding downstream 186580 17678898 ~ 17706118 (+)
G333582 NA non-coding upstream 36650 17446185 ~ 17447043 (+)
G333548 NA non-coding upstream 120618 17362871 ~ 17363075 (+)
G333360 NA non-coding upstream 297018 17186129 ~ 17186675 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 585838 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 593532 16888906 ~ 16890161 (+)
G333787 NA non-coding downstream 175318 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 178098 17670416 ~ 17670625 (+)
G333779 usf3 non-coding downstream 215404 17707722 ~ 17712380 (+)
G333795 NA non-coding downstream 249083 17741401 ~ 17756282 (+)
G333797 NA non-coding downstream 264007 17756325 ~ 17756542 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 181689 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 373666 17100164 ~ 17110027 (+)
G332636 NA other upstream 1917030 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 2168725 15134353 ~ 15314968 (+)
rnf6 rnf6,LOC106590444 other downstream 43626 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 269213 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 494444 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 823036 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 975560 18467878 ~ 18486009 (+)

Expression


Co-expression Network