rpl21 (rpl21,LOC107591224,LOC107701647,LOC107585018)


Basic Information

Item Value
gene id rpl21
gene name rpl21,LOC107591224,LOC107701647,LOC107585018
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17479340 ~ 17483210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938073.2
ATTTTTCCCCTTAGAAGGCCGAGCCGCAGGACCCCAACATTCTCTTTCCGCCCTAACCGCCATCTTGCGAGCAACCGGGGTAATCAGGCACCATGACGAACACAAGAGGCAAGAGGAGGGGAACCAGGTACATGTTTGCCAGGCCTTTCCGCAAGCATGGCCCAGTTCCTCTGTCCACTTACATGCGCATCTACAAGAAGGGAGATATCGTTGATATCAAGGGCACAGGAACCATTCAGAAAGGCATGCCTCATAAGTGCTACCACGGCAAAACGGGACGCATTTATAACGTCACTCAGCATGCTGTAGGCATCATTGTCAACAAGCAGGTCAAGGGCAAGATCCTGGCCAAGAGAATTAACGTGCGCATTGAGCATGTGAAGCACTCGAAGAGCAGAGAGAGCTTCCTGCAGCGCATCAAGGAGAACGAGAAGAGGAAGCTGGAGGCCAAGGCCAAGAACGCCTGGGTGGAGCTCAAGCGCCAGCCCGCTGCCCCTCGTCCAGCCCACTTCGTCAGCACCAAGAACAACGCGCCTCAGCTCCTGGAGCCCATCCCCTACGAGTTCATGGCATAAATCTGCTGACCCAATAAAgatctttatacacacaca

Function

symbol description
rpl21 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in hypotrichosis 12. Orthologous to human RPL21 (ribosomal protein L21).

NR:

description
PREDICTED: 60S ribosomal protein L21 isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02889 RP-L21e, RPL21; large subunit ribosomal protein L21e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938073.2 True 611 mRNA 0.54 6 17479340 17483210

Neighbor

gene id symbol gene type direction distance location
gtf3ab LOC100305039 coding downstream 8663 17467758 ~ 17470677 (-)
si:ch211-140b10.6 polr1d coding downstream 28916 17446518 ~ 17450424 (-)
pdx1 pdx1,LOC107580123 coding downstream 38830 17435073 ~ 17440510 (-)
gramd1c gramd1c coding downstream 63384 17400360 ~ 17415956 (-)
zdhhc23b zdhhc23 coding downstream 81396 17390655 ~ 17397944 (-)
wasf3b wasf3,wasf3b,LOC107705209,LOC107716409,LOC107584970,LOC107654222,LOC107701678 coding upstream 21679 17504889 ~ 17519966 (-)
cdk8 cdk8,LOC107732894,LOC107701677 coding upstream 38573 17521783 ~ 17535395 (-)
LOC113541063 shisa2 coding upstream 130094 17613304 ~ 17619370 (-)
LOC113541192 LOC108256613 coding upstream 146263 17629473 ~ 17636380 (-)
LOC113541196 usf3 coding upstream 223782 17706992 ~ 17719256 (-)
G333657 NA non-coding downstream 89227 17389862 ~ 17390113 (-)
G333656 NA non-coding downstream 89599 17389454 ~ 17389741 (-)
G333653 ccdc191 non-coding downstream 93694 17385279 ~ 17385646 (-)
G333652 NA non-coding downstream 95317 17383742 ~ 17384023 (-)
G333650 ccdc191 non-coding downstream 98104 17380855 ~ 17381236 (-)
G333700 NA non-coding upstream 58636 17541846 ~ 17542352 (-)
G333932 NA non-coding upstream 416629 17899839 ~ 17902383 (-)
G333934 NA non-coding upstream 419423 17902633 ~ 17902855 (-)
G333939 NA non-coding upstream 422698 17905908 ~ 17906806 (-)
G333971 NA non-coding upstream 441281 17924491 ~ 17924789 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 240224 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 339655 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 589916 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 599456 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 1166424 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 424374 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 426114 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 432874 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 954304 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1522288 19005498 ~ 19015855 (-)

Expression


Co-expression Network