c22h11orf65 (c23h11orf65)


Basic Information

Item Value
gene id c22h11orf65
gene name c23h11orf65
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17909324 ~ 17916556 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938079.2
TGCATGGAGAAGGGTGTAGATTGGACTGAACAGCTTGACGCTTAAATTTGATTGCTGATCCTGGTGTCTGATTATCACATAAAGGCACGAAGAAGGAAAAGATGAAATGCTCATATCTACTTAGCAGAgctttcactttctctccacCTATGCGGGCTGAAGAGGTGGAAGATACAGTGCCGATGTCAACACAGGACCGTTTGTATGACCGGGCAGCCAGAGTCATCCAAAGAACATGGAGGAAGCACGCTAACATTGTTGTTTTCAAATACTTCAAGAATCTCGTGAACTTCAGAAATCAAGGTGATCCACGTCTCCTGCTTAAATATGTCAACCCCAGAGAGGCTGATATTTTGGATGCTGCTTCAGGAGTCTACATACGATTCAGACTTGGTGGAACCAGCTTTCCCCCAAACATCTACTATAAAATCTTCACACACCGACCGATAGTGGACATGTGTGCCAACAGCCCCAAGGACTACACACATGCCGGGCAGAAGAGAGCCGTCGCACAGCAGGTCCATAACGGTGTGCCGCTGGTTCAGGATGATCGTTCGGGTTGGTACCATCGGGTGGAGAACAACGGCTGGAGGCTGCTGTCTGGCAAGATTTGTCTTCATGGAGACCCCATCACTCAAGACACAAACTGCAAAAGGATTGAATTCCACCACTGCAAACTCATTCGACGGCAAGACGctaagagaaagaagaagatcCGAAAAATTGAgtggatgaaaaaaatGTACGATGAAGGGGCtctgcacactcacactcagcacAGAGACACAGCTGTGCTGGTGGAGAATTCAGCTAAGGGTATGACGTGTGCAGTCGAGCAGACTGGACCCGGCACCATTACGGACTGGGAGGTAGACGAGCTGATCGAGTGGACCAGTGCCCTCAACTTTGATGAGTATATAAACGAATGGAAGATTGTGGGTACCAGTAAATCTTCAATGCTTCAGAAAGCCCCAGGAGTTCTCCCAGCTCACGCAGGACAGCAGTAGCGTCCTCCCTGCTCATGTCTCCAGTCTGAATCAATCAGATTACTCAAGAGGCGTCATCTGAGAGAGCATCATgtgatacaatacaatacaatcaGCACTTCACTCTATTAGCCACAAGAGAGCACACTGTTATtttcactgatcactgttgttcACTGACAACCAATCACGGATCACCGTTGTTCACTACAACCAATCACGGATCACTGTTGTTCACTACAACCAATCACGGATCACTGTTGTTCACTACAACCAATCACGGATCACCATTGTTCACTGACAACCAATCACGGATCACTGTTGTTCACTACAaccaatcaccaatcaccattgttcactgacaaccaatcactgatcactgtcgTTCGCTACAACCAATCACGGATCACCATTGTTcactgacaaccaatcactgatcactgtcgTTCGCTACAACCAATCACGGATCACCATTGTTcactgacaaccaatcactgatcactgtcgTTCGCTACAACCAATCACGGATCACCATTGTTCACTACAACCAATCACTGTTCACCATTGTTCACTGACatccaatcactgaccaccattgctcactacaaccaatcactgatcaccattgtt
>XR_004576970.1
TGCATGGAGAAGGGTGTAGATTGGACTGAACAGCTTGACGCTTAAATTTGATTGCTGATCCTGGTGTCTGATTATCACATAAAGGCACGAAGAAGGAAAAGATGAAATGCTCATATCTACTTAGCAGAgctttcactttctctccacCTATGCGGGCTGAAGAGGTGGAAGATACAGTGCCGATGTCAACACAGGACCGTTTGTATGACCGGGCAGCCAGAGTCATCCAAAGAACATGGAGGAAGCACGCTAACATTGTTGTTTTCAAATACTTCAAGAATCTCGTGAACTTCAGAAATCAAGGTGATCCACGTCTCCTGCTTAAATATGTCAACCCCAGAGAGGCTGATATTTTGGATGCTGCTTCAGGAGTCTACATACGATTCAGACTTGGTGGAACCAGCTTTCCCCCAAACATCTACTATAAAATCTTCACACACCGACCGATAGTGGACATGTGTGCCAACAGCCCCAAGGACTACACACATGCCGGGCAGAAGAGAGCCGTCGCACAGCAGGTCCATAACGGTGTGCCGCTGGTTCAGGATGATCGTTCGGGTTGGTACCATCGGGTGGAGAACAACGGCTGGAGGCTGCTGTCTGGCAAGATTTGTCTTCATGGAGACCCCATCACTCAAGACACAAACTGCAAAAGGATTGAATTCCACCACTGCAAACTCATTCGACGGCAAGACGctaagagaaagaagaagatcCGAAAAATTGAgtggatgaaaaaaatGTACGATGAAGGGGCtctgcacactcacactcagcacAGAGACACAGCTGTGCTGGTGGAGAATTCAGCTAAGGGTATGACGTGTGCAGTCGAGCAGACTGGACCCGGCACCATTACGGACTGGGAGGTAGACGAGCTGATCGAGTGGACCAGTGCCCTCAACTTTGATGAGTAATTCACCTATGATTCATACATGGAcaaaatgcattatatataGTTGAATGTAAATATCTacagcaatttaaaaaacaatgaaaccaacaaaacactcagtGTATATAAACGAATGGAAGATTGTGGGTACCAGTAAATCTTCAATGCTTCAGAAAGCCCCAGGAGTTCTCCCAGCTCACGCAGGACAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938079.2 True 1616 mRNA 0.47 10 17909324 17916556
XR_004576970.1 False 1105 misc_RNA 0.46 10 17909938 17916556

Neighbor

gene id symbol gene type direction distance location
LOC113541342 acot9,acot9.1,LOC107705219,LOC107654207 coding downstream 9646 17890350 ~ 17899678 (-)
abhd10b abhd10b,LOC108256739,LOC108442198,LOC107716420,LOC107705222,LOC107591218,LOC107654210,LOC107701684 coding downstream 19562 17885548 ~ 17889762 (-)
tagln3b tagln3,tagln3b,LOC108442189,LOC107701685,LOC107705223,LOC107654214 coding downstream 25991 17880010 ~ 17883333 (-)
c1qtnf9 LOC108256147,LOC108442199 coding downstream 30127 17876714 ~ 17879197 (-)
spata13 LOC108256577 coding downstream 34383 17849766 ~ 17874941 (-)
zgc:112982 NA coding upstream 67488 17984044 ~ 17995146 (-)
map7d2b map7d2 coding upstream 81111 17997667 ~ 18019023 (-)
eif1axb eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255 coding upstream 105108 18021664 ~ 18026948 (-)
rps6ka3b LOC108256425,LOC108438828,LOC107590208,LOC107663698 coding upstream 112958 18029514 ~ 18077339 (-)
pdha1b pdha1,LOC108256426 coding upstream 163707 18080263 ~ 18086234 (-)
G333939 NA non-coding downstream 2518 17905908 ~ 17906806 (-)
G333934 NA non-coding downstream 6469 17902633 ~ 17902855 (-)
G333932 NA non-coding downstream 6941 17899839 ~ 17902383 (-)
G333700 NA non-coding downstream 366972 17541846 ~ 17542352 (-)
G333657 NA non-coding downstream 519211 17389862 ~ 17390113 (-)
G333971 NA non-coding upstream 7935 17924491 ~ 17924789 (-)
G334038 NA non-coding upstream 112019 18028575 ~ 18028834 (-)
G334050 NA non-coding upstream 162597 18079153 ~ 18079979 (-)
G334042 NA non-coding upstream 177947 18094503 ~ 18099286 (-)
LOC113541306 NA non-coding upstream 191141 18107697 ~ 18109070 (-)
LOC113541127 LOC108256571 other downstream 512 17907584 ~ 17908812 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 670208 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 769639 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 1019900 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 1029440 16829790 ~ 16879884 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 520958 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1088942 19005498 ~ 19015855 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other upstream 1590532 19507088 ~ 19521331 (-)
nup58 nup58,LOC107721897,LOC107590217 other upstream 1638585 19555141 ~ 19579031 (-)
G335165 amer2 other upstream 1684171 19600727 ~ 19603693 (-)

Expression


Co-expression Network