hgd (hgd,LOC107705246,LOC107721894)


Basic Information

Item Value
gene id hgd
gene name hgd,LOC107705246,LOC107721894
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19395899 ~ 19411215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938080.2
ctctctctctctctctctctctctctggagctGATGTGAGAGGTGGGACAAAGTCTCAGGCTGTTAAAAAACTACCTCCAGTTTCTTTGTAAAGTTCAGCgacttttcttttaaacaagCGCGCGCCATGGCCGGGCTGAAGTACCTGAGCGGTTTTGGCAATGAGTTCGCCTCAGAGGATCCTCGCTGTCCTGGGGCTCTACCTGAGGGCCAGaacagTCCACAGGTGTGTCCGTACGGACTGTATGCTGAGCAGCTCTCAGGCTCGGCCTTCACTTGCCCACGAGGAACCAATAAGAGAAGctGGCTGTACCGGATACTACCTTCTGTTCAGCACAAACCCTTCTCTCCCATAACCTGTGGAAACCTCACTGATGACTGGAATGAAGTGGAACCTGATCCCAACCAGcttcgGTGGAAGCCGTTTATCATCACTAAAGCTCTGGAGAAGAAGGTGGATTTTGTAGAGggTCTGCACACAATCTGTGGTGCTGGAGACTCGAAATCTCGCAATGGGATCGCCATCCACATATACACCTGCAACACGTCGATGATTGACAGGTGCTTCCAGAACTCGGATGGTGATTTCCTCATTGTGCCACAACAAGGTGAAATCTTGGTCACCACCGAGTTCGGGAAGATGATGGTGGAGCCGAATGAGATCTGCGTCATTCAGCACGGGATGCGTTTCAGCGTGGACGTGTTTGGAGAGACCAGAGGTTATATCCTGGAGGTCTATGGCGCTCACTTCGAGCTGCCGGACCTCGGACCCATCGGAGCTAATGGACTCGCTAATCCTCGAGACTTCCTGACTCCTGTGGCTTGGTTTGAAGATCGCACCGTAGCCAGCGGTtacaccatcatcaacaagtacCAGGGGAAGCTCTTCTCCTGTCAGCAGGACTTTTCACCTTTTAACGTGGTGGCGTGGCACGGAAACTACGCTCCCTACAAATACAACCTGGAGAACTTCATGGTCATCAACTGCGTAGCGTTCGATCACGCTGATCCGTCCATTTTTACCGTCCTGACGGCCAAATCCACTCGGCCCGGTGTCGCCATTGCTGATTTTGTCATCTTTCCACCTCGCTGGGGAGTCGCGGATCACACCTTCAGACCTCCGTACTATCACAggaACTGCATGAGCGAGTTCATGGGATTAATCAAGGGTCGCTATGAGGCAAAGGAAGAAGGTTTCCAGTGCGGAGGAGCGAGTCTGCACAGCATGATGACCCCTCACGGCCCCGACGCTGACTGCTTTGAGAAGAACAGCACGGCTAAGCTCAAACCCGAGAGAGTCGCTGAGGGAAACAtgGCCTTCATGTTCGAGTCGTCCTTCAGCATGGCGGTCACCAAGTGGGGCCTTGAGACGTGCCAGCGTCTGGACAAGAGCTACTACAAATGCTGGGAGCCTCTGAAGAAACATTTTAACCCAAACTGGAAACCTGGCAGCATGTAAACAGGCCACGGTGCAGAGCGCAAGAAGCCTTAATTATCCCCGTTAATTATCCATGAGTCATTATCCTCTTcctatatatggatatataccAACTGCAGTGGCAAAGTATTACAGCATAGACATGCGGAGTTAAAGCTGAAACCCTGAAAGTTgcaataaaatcaaatttaatcACGAA

Function

symbol description
hgd Predicted to enable homogentisate 1,2-dioxygenase activity. Predicted to be involved in L-phenylalanine catabolic process. Predicted to act upstream of or within tyrosine metabolic process. Predicted to be active in cytoplasm. Is expressed in digestive system; fin; median fin fold; pectoral fin bud; and retina. Human ortholog(s) of this gene implicated in alkaptonuria. Orthologous to human HGD (homogentisate 1,2-dioxygenase).

NR:

description
PREDICTED: homogentisate 1,2-dioxygenase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0004411 homogentisate 1,2-dioxygenase activity molecular_function

KEGG:

id description
K00451 HGD, hmgA; homogentisate 1,2-dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938080.2 True 1637 mRNA 0.51 14 19395899 19411215

Neighbor

gene id symbol gene type direction distance location
ropn1l ropn1l coding downstream 4366 19382488 ~ 19391533 (-)
ankrd33ba LOC108256627 coding downstream 18026 19363399 ~ 19377873 (-)
pex2 pex2 coding downstream 579825 18808594 ~ 18816074 (-)
cops5 cops5,LOC107590195,LOC107705241,LOC107663714 coding downstream 893817 18496163 ~ 18502082 (-)
ppp1r42 ppp1r42 coding downstream 905318 18483387 ~ 18490581 (-)
pola1 pola1,LOC107705179,LOC107666635,LOC107721886,LOC107663691 coding upstream 28548 19439763 ~ 19489383 (-)
LOC113541094 pola1 coding upstream 78103 19489318 ~ 19496957 (-)
slc51a LOC108256565 coding upstream 111400 19522615 ~ 19531363 (-)
zdhhc20b LOC108438268,LOC108256609,LOC107705266,LOC107586722,LOC107590215,LOC107663708 coding upstream 129568 19540783 ~ 19554793 (-)
phldb2b LOC108256156,LOC108438454,LOC107586724,LOC107721837 coding upstream 197822 19609037 ~ 19663355 (-)
G335099 NA non-coding downstream 35161 19317859 ~ 19360738 (-)
LOC117595792 NA non-coding downstream 320633 19070338 ~ 19075266 (-)
G334602 NA non-coding downstream 434846 18960847 ~ 18961053 (-)
G334574 NA non-coding downstream 463059 18932629 ~ 18932840 (-)
G334570 NA non-coding downstream 465460 18929979 ~ 18930439 (-)
LOC117595800 NA non-coding upstream 3013 19414228 ~ 19416072 (-)
G335149 NA non-coding upstream 139825 19551040 ~ 19551530 (-)
G335150 NA non-coding upstream 149763 19560978 ~ 19564462 (-)
G335230 NA non-coding upstream 361638 19772853 ~ 19773057 (-)
G335232 NA non-coding upstream 377368 19788583 ~ 19789058 (-)
pkia pkia,LOC107666628,LOC107705234 other downstream 380044 19005498 ~ 19015855 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other downstream 875694 18437514 ~ 18520205 (-)
zmp:0000000991 NA other downstream 1464085 17916084 ~ 17931814 (-)
c22h11orf65 c23h11orf65 other downstream 1479343 17909324 ~ 17916556 (-)
LOC113541127 LOC108256571 other downstream 1487087 17907584 ~ 17908812 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other upstream 95873 19507088 ~ 19521331 (-)
nup58 nup58,LOC107721897,LOC107590217 other upstream 143926 19555141 ~ 19579031 (-)
G335165 amer2 other upstream 189512 19600727 ~ 19603693 (-)
cnksr2a cnksr2,cnksr2a other upstream 477824 19889039 ~ 19967804 (-)
G335523 NA other upstream 768197 20179412 ~ 20182412 (-)

Expression


Co-expression Network