ndufb4 (ndufb4)


Basic Information

Item Value
gene id ndufb4
gene name ndufb4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19391973 ~ 19395890 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938081.2
AATCGCTCCGTGCTCCATCAGCGACCGCCCGCAAACATGGCGGACTACAAGGAGGCACCTTTGGCGACTCGGCCAAAAACATTAGAGCCAGCGGAATATTTTAACGTTTCTCCCGAATATCGCCGGGCGGAGGAGCAGCGAGGAGCGTTCAGAGCCCGACTGAAGAGAGAATATCAGATGCAGCTGAATAATCCTCTGCGGAAAGAGCTGATTgAGGACCCGGCCCTCACGAGGTGGACGTACGCCCGCACTGAGCTGTATAATCATTTCAGACCATCACCGAAATCCTCCCTGATCGCTGGTTTGTTTGGCGTCGCTCCACTCTTCATCTTGTACTACGTCTTGAAGACTGACCGCGACAAGAGGGAGCAGCGGATAAAAGACGGGACTTACAAACGCCCTTTCAGACTCTCATACTGATCTCTGATTTGTATTTCAGGTTAAATCGTTGTCTCCGATtgtacatgtaactataaataaactATTGATGAAAGAATTAGTGAAA

Function

symbol description
ndufb4 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including adaxial cell; digestive system; lens; musculature system; and solid lens vesicle. Orthologous to human NDUFB4 (NADH:ubiquinone oxidoreductase subunit B4).

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
K03960 NDUFB4; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938081.2 True 505 mRNA 0.49 3 19391973 19395890

Neighbor

gene id symbol gene type direction distance location
LOC117595802 NA coding upstream 55323 19335026 ~ 19336650 (+)
LOC117595764 NA coding upstream 56693 19332174 ~ 19335280 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding upstream 63848 19060889 ~ 19328125 (+)
zc2hc1a zc2hc1a coding upstream 358312 19021006 ~ 19033661 (+)
LOC113541280 LOC108256606 coding upstream 460701 18816234 ~ 18931272 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding downstream 33878 19429768 ~ 19436760 (+)
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding downstream 102412 19498302 ~ 19506536 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding downstream 183420 19579310 ~ 19593452 (+)
amer2 amer2 coding downstream 204675 19600565 ~ 19603770 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding downstream 344167 19740057 ~ 19750055 (+)
G334733 NA non-coding upstream 40221 19345889 ~ 19351752 (+)
G334575 NA non-coding upstream 458722 18933049 ~ 18933251 (+)
G334573 NA non-coding upstream 459263 18932502 ~ 18932710 (+)
G334386 NA non-coding upstream 537970 18761089 ~ 18854003 (+)
G334371 NA non-coding upstream 665243 18688759 ~ 18726730 (+)
LOC117595782 NA non-coding downstream 125475 19521365 ~ 19522260 (+)
G334806 NA non-coding downstream 165212 19561102 ~ 19589060 (+)
G334888 NA non-coding downstream 308795 19704685 ~ 19707006 (+)
G335214 NA non-coding downstream 370580 19766470 ~ 19766826 (+)
G335215 NA non-coding downstream 371573 19767463 ~ 19768343 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 644496 18712048 ~ 18747477 (+)
G334373 NA other upstream 674020 18693149 ~ 18717953 (+)
mcmdc2 mcmdc2 other upstream 905964 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 1068678 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 1398959 17986762 ~ 17993014 (+)
G334838 NA other downstream 180221 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 240978 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 282591 19678481 ~ 19683870 (+)
G335231 NA other downstream 392693 19788583 ~ 19789058 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 474491 19870381 ~ 19882836 (+)

Expression


Co-expression Network