hs6st1b (hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591)


Basic Information

Item Value
gene id hs6st1b
gene name hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12428457 ~ 12499046 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938086.2
aaaaaaaaaaaaaaaaaaaaaagtgtgagtgTTTAATGTGCGCGCGCGCGCCGCGGTCTGCTGAGCCGCTCCGGTCCCGTTGATCTATGGAGGGCGCGAGCACCGAGCCAAATCCGCTACCCGAGACCCCGCTGTGTGAGACATGGTGACAGATGAACATCGCGGGAAGGACCATGGCTGAGCGGGCCAGCAAATTCGTGCTGATCGTCGTTGGCTCCGTGTTCTTCATGCTCATTCTGTACCAGTACGTAGCGCCCGGTGCGATCAACTTCGGCTCTCCGGCGCATGGCTACCTCACCGAGGAGGACATGACCATCTTCCCCACGCCGGATCCGCACTATGTGAAAAAGTACTACTTCCCGGTGAGGGACTTGGAGCGCAGCGTGGACTTCGAGATCAAGGGCGAGGACGTGATCGTGTTCCTGCACATCCAGAAGACAGGCGGCACTACATTCGGACGGCATCTGGTCCAAAACGTGCGGCTGGAGGTGCCGTGCGACTGCAGGCCGGGCCAGAAAAAGTGCACGTGCTACCGACCGAACCGCAAGGAGACGTGGCTCTTCTCGCGCTTCTCTACCGGCTGGAGCTGCGGCTTGCACGCGGACTGGACCGAGCTGACCAACTGCGTGCCCGGAGTCCTCAACAGGAAGGAGAGCAAGACAAAGAAACTGAGGAAGTTCTACTATATCACTCTTCTTCGGGACCCAGTGTCAAGATATCTAAGTGAATGGCGCCATGTGCAACGAGGTGCCACATGGAAGACGTCACTGCACATGTGTGACGGCCGCACGCCCACACCCGAGGAGCTACCCACCTGTTACGATGGCGCGGACTGGTCAGGCTGCACCCTCCAGCAGTTCATGGAGTGCCCATACAACCTGGCCAACAACCGGCAGGTGCGCATGTTGGCTGATCTGAGTCTGGTAGGTTGCTACAATGCATCCACACTGCCTGAGAAGCAGCGAGCCCGTCTCCTTCTCGAGTCAGCTAAGAAGAACCTGCGTGACATGGCCTTCTTCGGACTCACGGAGTTTCAGCGCAAAACACAGTACCTATTTGAGCGCACCTTCCGTCTCCGCTTCATCCGGCCGTTTGTACAGTACAATAGTACGCGTGCTGCTGGTGTTGACCTGGACGAGAGCACCGTGCAACGCATTGAGGAGCTCAATGAGCTTGACATGCAACTCTATGACTACGCAAAAGACCTGTTCCTTCAGAGGTACCAGTACACTCACATGCTGGAGAGGCGTGAGCAAAGAATGATGCTCCGAAATAGAGTCTCTTTCCACAGCCTGGCACGGGAGGAGGGTGCAGGGGGAGAGGGCACTGCTCGGCTGCCCACTGAGGACTACATGAACCAGATTGTTAGTGGATGGTAGCCCAGGAGATCtctctttaaaaagaaagagagacacaaagacaaATAATGGGTGGAGAATCCATCTTTTCTCTAACTTATGGAGAAATAAAGTGGTTATCATGGACTCTTTTCCCCAGGAATCTTTAAAGAGTAAGATGCACAGGAAAACAGGCAAAGATAGTGAGTGGCGGACGTGGCCTTTTCCGAGAGAAGGGATCATTAtgggcattctctctctcttttccccagGAATCTTTAAAGAGAGAGGTGCATAATGAGAGAACTGAGAAATGGTGGGTGaaagaaccatttctatttCAGCTCATGTAGAAAGATAGGGATCATTATGGACCCTTTCTCTCGTTTCTCCCAGAAATCTTTGAAAAGACATGCAGGGGCAGAGAAATGGCAAAGATCATGGGTAGAGGAGTCATCATAGACAGAGAGCGATCATTGCAAGCCCTCGGTCATTTCTCCACAAATAAGGTGTAGTTTGGGCCAGACCTACAAGAGATAGTAGTTATTGAGGTGACTAGGGATTTAGAGTGCACCTTTCCGGATGGGTGAGCACATATCCCCATCCCCTCCATAAAGCCCAGGCCTAAATGACAAATTGTAAATGCTTAATACAATTCAACCAGTAAAGCGTTGTTTCAATGAGCTGCAACAAAATTCTACAAAGCTTAGTTTTGTATAcgaacgaaaaaaaaaatgtgaataaaatcacTTGTCTTAGAAAAGTCATCCAAATATTGGGAATATTCAGAATGTTTTATATTCTGTGTATAAATCTTaagtttctcctttttttttatggtaAACTGATGTGAAGTGCAGAGACTGGAAATTTCCACATGAGATTATTACTAACAGACGCTGTGATTCAGTTTGTTTTAAGAGAgatatatgttaatatataatGCAGACATGGCCTTGTTT

Function

symbol description
hs6st1b Predicted to enable heparan sulfate 6-O-sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, enzymatic modification. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including hindbrain neural keel; immature eye; nervous system; pancreatic bud; and presumptive floor plate. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 15 with or without anosmia. Orthologous to human HS6ST1 (heparan sulfate 6-O-sulfotransferase 1).

NR:

description
PREDICTED: heparan-sulfate 6-O-sulfotransferase 1-B

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K02514 HS6ST1; heparan sulfate 6-O-sulfotransferase HS6ST1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938086.2 True 2299 mRNA 0.49 2 12428457 12499046

Neighbor

gene id symbol gene type direction distance location
bcl2a bcl2 coding upstream 194274 12181785 ~ 12234183 (+)
LOC113541340 LOC108256745,LOC108434245 coding upstream 248836 12162455 ~ 12179621 (+)
vps41 vps41,LOC107722032,LOC107558337,LOC107748298 coding upstream 484949 11900755 ~ 11943508 (+)
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding upstream 875240 11488916 ~ 11553217 (+)
asap1b LOC108256502,LOC108256646,LOC108434233 coding upstream 942152 11391309 ~ 11486305 (+)
LOC113541349 LOC108256200 coding downstream 207893 12706939 ~ 12708003 (+)
ccl34b.4 LOC100304628 coding downstream 211580 12710626 ~ 12712651 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding downstream 267514 12766560 ~ 13015109 (+)
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding downstream 522121 13021167 ~ 13042516 (+)
skida1 skida1 coding downstream 775614 13274660 ~ 13278025 (+)
G331003 NA non-coding upstream 155167 12211250 ~ 12273290 (+)
G330976 NA non-coding upstream 285592 12141943 ~ 12142865 (+)
G330962 NA non-coding upstream 394398 12024576 ~ 12034059 (+)
G330911 cdv3 non-coding upstream 482219 11944030 ~ 11946238 (+)
G330908 NA non-coding upstream 532566 11895666 ~ 11895891 (+)
G331277 NA non-coding downstream 233763 12732809 ~ 12733703 (+)
G331280 NA non-coding downstream 242071 12741117 ~ 12741678 (+)
LOC113541232 NA non-coding downstream 298315 12797361 ~ 12802125 (+)
G331342 NA non-coding downstream 545269 13044315 ~ 13049452 (+)
G331343 NA non-coding downstream 551996 13051042 ~ 13051859 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 271670 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 679898 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 1444248 10874209 ~ 10984209 (+)
G330257 NA other upstream 1453542 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 1660097 10595130 ~ 10768360 (+)
G331263 LOC108256200,LOC100304628 other downstream 207893 12706939 ~ 12712678 (+)
G331476 NA other downstream 758848 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2635307 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 2752589 15251635 ~ 15265895 (+)
G332636 NA other downstream 3067129 15566175 ~ 15566663 (+)

Expression


Co-expression Network